ddx23 (LOC106571944)


Basic Information

Item Value
gene id ddx23
gene name LOC106571944
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 39401035 ~ 39411199 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615616.2
ACCGGTGTTTCTTGGGAAATGTAGGGAAATGGTTTTAACACCATGCTGAACCTACACTGTGTAATGCCTCTAGAAAACCACAATTACCAGACTCAGAATCCGTTGTTCTTTTCATTTGTGGCGTCGTGCAACATGGCGGCTTGGTAAAACGAAGATAGTTCGTAAGCATCTTGTTTTTAAGAGACCATGATGGCTGGTGATCCAACCGACAAGAACAATGCAGCAGAGACCTCAGGAGTCAAGGATAAGGATCGGGAGCGGAAACGCAGTCGCTCACGAGAGCGTGAACGCAAAGGCTCCCCGTCCAAGGACCGGAAACCTCGCCAACGCTCTCGTGAACGCAACCGATCCAAATCCGCAGAAAGAGATCGCCGTCTGAAggacaaggagagagaaaaggagcacGACCGGGacaagaacagagagaggggtcgCAAGGACCGCGATAAGGACGGTCACCGCAGAGACAAAGACTGCAGCAAGAAATCCAGAAGCGTCTCCCCCAAGTCCAAGGACAGGATAAAGAGGGAGAAGGATTtgaagaaagaggaggatgaggaagatgagAAAAAGAAGAAAAGCAAGGTCCAGCCACTGTCTCTAGAGGAACTTCTAGCCAAGAAGAAGGCAGAGGAGGAGGCGGAGGCAAAGCCCAAGTTCCTGTCCAAGGCGGAGCGCGAGGCGGAGGCTCTGAAAAGGAGGCAGCAGCAGactgaggagaggaagaagactaTCGATGAggacaggaagaagaggaggatgttccAGGACATCGGGAGGAAGATGATGGAGGACCCCCAGGAGAGGGACAGACGAGAACGGAGAGAGCGGATGGAGCGGGAGAACAACGGGGACCAAGCGGATGACGGAAGACAGAAGATCAGAGAGGAGAAGGATAAGGGCAAGGAGCTCCAGGCCATCAAGGAGCGTTATCTGGGCGGGACTAAGAAGCGCCGGCGGACACGTCACCTGAACGACAGGAAGTTTGTCTTTGAGTGGGATGCCTCTGAAGACACGTCTACCGACTACAACCCCATTTATAAGGAGAAGCACCAGGTCCAGCTGTATGGCCGGGGCTTCATCGCTGGGATCGACCTCAAGCAACAGAAGAAAGACCAGTCCCATTTCTACGTGGACATGATGGAGACGAGACGCACACTGGaggagaaggagcaggaggaGGTGCGACTGAAGAAGGTTCATAAGAAGGAGGCCAAGCAGCGTTGGGATGACAGGCACTGGTCCCAGAAGAAGCTGGAGGAGATGGCGGACAGGGACTGGCGTATCTTCAGGGAGGATTACAGTATCACCACCAAGGGTGGCAAGATCCCCCACCCCATCAGGAACTGGAAGGAGTACAACCTGCCCCCACACATCGTGGAGGTCATCGACAACTGTGGCTACAAGGATCCAACGCCTATCCAGAGACAAGCCATCCCCATTGGCTTACAGAACCGCGACATCATCGGCGTGGCTGAGACGGGTAGCGGTAAAACGGCTGCCTTCCTCATCCCCCTATTGGTCTGGATCACGACCCTGCCTAAGGATGAAAGGATTGAGGACTCGGACCAGGGTCCGTATGCAGTGATCCTGGCCCCCACCCGTGAGCTGGCGCAGCAGATCGAGGAGGAGACCCTTAAGTTTGGGAAACCTCTGGGCATTCGCACCGTGGCTGTCATTGGAGGTATCtccagggaggaccagggattCCGCCTCCGGATGGGCTGCGAGATAGTGATAGCCACCCCAGGTCGTCTGATAGACGTGTTGGAGAACAGATACCTGGTCCTGGGCCGCTGTACCTACGTGGTACTGGACGAGGCTGACCGCATGATAGACATGGGCTTCGAGCCTGACGTCCAGAAGATCCTGGAGTACATCCCTGTGACCAATCAGAAACCAGACACGGATGAAGCAGAGGACCCCGAGAAAATGAAGATGAACTTCGAGATGGGAAAACACAAgtacagacagACGGTCATGTTCACAGCTACCATGCCCGCGGCGGTAGAACGGTTGGCCCGTAACTACCTGCGTCGTCCGGCCGTAGTGTACATCGGTTCAGCTGGTAAACCCCACGAGAGAGTGGAACAGAAGGTCCTGctcatgggagagggagagaagagGAAGAGGCTGCTGGATGTTTTGGCACGCGGGTTCGAGCCGCCCATCATCATCTTCGTCAACCAGAAGAAGGGTGTCGACGTGCTGGCCAAGTCTCTGGAGAAGATGGGGTACAATGCTTGCACGTTGCACGGTGGCAAGGGCCAGGAGCAGAGAGAGTTTGCTCTGTCCAACCTGAAGGCTGGAGCCAAGGACATCCTGGTGGCCACCGACGTGGCTGGGAGAGGTATCGACATCCACGACGTCTCCATGGTGCTCAACTACGACATGGCCAAGAACATCGAGGACTACATCCATCGTATCGGTCGTACGGGTCGCGCTGGGAAGAGCGGCGTGGCACTGACCTTCCTCACCAAGGAGGACTCGTCAGTGTTCTACGACCTGAAGCAGGCCTTCCTGGAGAGCCCCGTGTCCACCTGCCCCCCCGAGCTGTCCAACCACCCCGACGCCCAGCACAAGCCTGGTACCATCCTCACCAAGAAGAGACGCGAGGAGACCATCTTCGCCTGACGTGCCAGATCATGTTAAATGGTTACGCCGCCCTAGGACCTGCCACCACACACACTGGGTTTTCACTCGTTTTAATCATATGTTTTTGCAGTCTCTCAACACCTACGGTatcccccctccttccttcctgtgTCTTCTGTTCTTTTCTcatttcctttctctttctcagtcttGCCACTCTCTTCAGTCCTCCTTTCTCATTCCTCCATTGTTAGGCTTCCCCTTCTGTAGCCCGGCTACTGTACGAAATGTTAGGCTGATGGAAGGGCCTGGGGGTTCATATTCTGGTTTTGGTTTTTGCTACAGGAGAATAGAGAGCCTCTTGGTCTGTGTGGGGAAGGGACGTTAATGGAAGGTCATGTGAGCGCCAAACCTATACTTTATTTCAAAGAGCCCCTGTAACAACACACAAGCGGTCCCAAAAGGCCAAGACAGAAATGTTGTAGTGTGATTGTTAGCCCTGTTGTGACAAGTTTTAAAATTGTGTAAAAAGACCAATACATTGAATACCTTTTGTCTCCCAGAGAAACATGGTAGATGTGGTGTTTTCTTTCATCAGTCAGCTGGTTATGATGAGTATTTTGGAATGTGATGTTTGCTACGTTGAATTCTATGAagtgaataaaacccaacttttgACTGACA

Function

NR:

description
PREDICTED: probable ATP-dependent RNA helicase DDX23

GO: NA

KEGG:

id description
K12858 DDX23, PRP28; ATP-dependent RNA helicase DDX23/PRP28

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615616.2 True 3279 mRNA 0.53 17 39401035 39411199

Neighbor

gene id symbol gene type direction distance location
LOC110532026 LOC106571943 coding upstream 17810 39375368 ~ 39383225 (+)
LOC110532020 LOC106571937 coding upstream 144409 39240179 ~ 39256626 (+)
LOC110531165 LOC106571934 coding upstream 163627 39111355 ~ 39237408 (+)
LOC110532019 LOC106571933 coding upstream 328650 39064150 ~ 39072385 (+)
LOC110532013 LOC106571930 coding upstream 491317 38886624 ~ 38909718 (+)
adcy6a LOC106566714 coding downstream 54732 39465931 ~ 39513879 (+)
LOC110532032 NA coding downstream 90054 39501253 ~ 39503641 (+)
g6pd LOC106571947 coding downstream 120260 39531459 ~ 39542666 (+)
spryd4 LOC106571951 coding downstream 228042 39639241 ~ 39640889 (+)
LOC110532038 LOC100286410 coding downstream 274629 39685828 ~ 39715886 (+)
G802317 NA non-coding upstream 2942 39397878 ~ 39398093 (+)
G802313 NA non-coding upstream 10496 39390298 ~ 39390539 (+)
G802191 NA non-coding upstream 16139 39326030 ~ 39384896 (+)
G802195 LOC107737655 non-coding upstream 61841 39337906 ~ 39339194 (+)
G802292 NA non-coding upstream 78198 39322616 ~ 39322837 (+)
G802325 NA non-coding downstream 3526 39414725 ~ 39415718 (+)
G802328 NA non-coding downstream 25167 39436366 ~ 39516038 (+)
G802353 NA non-coding downstream 35884 39447083 ~ 39469432 (+)
G802392 LOC106571950 non-coding downstream 142988 39554187 ~ 39556665 (+)
G801851 NA other upstream 467167 38932952 ~ 38933868 (+)
G801778 NA other upstream 612681 38788061 ~ 38788354 (+)
G800834 NA other upstream 1329602 38070216 ~ 38071433 (+)
G802324 LOC106571945 other downstream 4676 39415875 ~ 39417460 (+)
G802821 NA other downstream 378458 39789657 ~ 39790402 (+)
G802822 NA other downstream 380718 39791917 ~ 39792333 (+)

Expression


Co-expression Network