LOC110532032


Basic Information

Item Value
gene id LOC110532032
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 39501253 ~ 39503641 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474798.2
TGGTTTGAGTGCGAGTATCTTCGGAAACTCTACAGATATTCTTGGGCGGAGGAATATTTTTAAAGTGTGGAAACTAATACGGTTGTATGTTTTGCTGTAAACTGAAATCAATTGAAGTCGTTCAAACCAATCCtacatgtgttactgtctctGCCCAGTAGGAGGCAGGCTTCACCTGCATAATGATGTGGCACCCCGACTGTCTATTTCAGGATGATTCAAATATTTACAAGGATAGAATCACTTTCATATTAAGTAAAGGGAGAGcctaagagagaaagaaagacgtgGGGGGTTGGCAAAATACATTCTCTTATACCTCAATGGAAAGATGTGGTATAGATTGGGGTGACCTTGTTTAACCCTCTCTGCCTCATGAGCACCATAACAACTTGTCTGTGCTAATTTAGGGTCTCCACATAGGGTGTGACATCACAGTGTTTCCTGTTGGCATGCGGCCAGCCTGTGTTTGTGTCTAAAAgcagtggagggtggagggtttctactctctctctcacgcagcATGCTGTGAAAAAGAGGCCATCTTTAAAGGAAACTGCTTCTCGTCGGGTCAAAGGGCAGTGGTTTTTCCCACACTGCAGCTGGGGACACTCTGGGGACAGTGTGACAGGCACAGGACACATAAAAAAAAAGCCTGTTTAAAGTGTAAGGAGTTCAGAAAGCAAGCTGTAAAACATATGAGGTGGTCAATGAGGGGATGAGAACAGGAGGAAACACGACTTCACAAACAGGATCAGCATGCCTCCAAAGGGAATGTTAATGTTGCTGTTGTtggtgtgcatgtgcatgtgtggaCGCGCGTGGGTGTGAATTTGGGTGTTTGCAGGAGTGCATGCATGGATACTGTGTATTTCCATACAAGGTCAGATGTATGTAAGGTATTATAATGATTTAACTGCACATCTCAGCCCATGAGAAGTACACTTTGTCATTGAACACAGTATATGACCTGTGAATCTGTATGGAAGCCATCATAGAATAAAAGAAAGAGAGCTGTGTAGGGATGAAACGGTTACCGGTTTCACGACCAACCACAGTAAAATTCCCGACGATTAGTATTACCGTTTCAAATTTGAATTATCATTAAAAACCGTGTTTGATTACCACGGGTTGGAAAAACTCGCGGTAAATACTGTCCAGCATCAACCAAATTTAGCAACGGTCTGACGCAGGCGCAGCATGCAACGTGGGTTTTGTTTTGTGTGAAAACATGACGGAAGGCAGTGACAGCACTCGGGAGATTTTTCAGCCTTCCAAGAGGACCACATCTGAAGTGTGGtcgtatttttttttaaagagtgttGAGAAACTTCATCGAATATCACCTTGTCTGCAGAACAACAACCAAAAAATCGCTGCGAAAGGGCGCAACACTTCACATCTCTTGGGTCAATCTTCATGACCACCACCCCACTACTTTATAGCGAATGCAAGAGATGGACGTACAGCAGGCAAACCCAGTGATGCTACCGGTCCCTCCTCGTCTACAGTTGTGACACAGACACTCTAGCAAGCATTTAAAAAGGCAGGCTGCTTATGCACCCACATCAAAAAATGCTCAAGACCTCACTGTAGCCCTTTCCTATTACATTGCAAAGGACATGATGCCATTTCAAATTGTTGAGAAGCCTGAAGGTTGCCGTGCCTCACTACGAAGTGAGTGCTGCTAATTGTAtttgttgtttattttatttgctTACTTAAGGTTGTGCTCATTTAAACCTGTGCTAGGGGAACTTCTACCTGTCATGGCCACATGGTGCCATCTTTAATGTTTTTACTTTAGTGTTTATGCCCACAAAAAGTGCACAGTGCTGCTAATTTTATTTGTCGTTTGTTGGTTTTCAATATAAAACTTGGTGAAATGA
>TU913040
ACAGCACTCGGGAGATTTTTCAGCCTTCCAAGAGGACCACATCTGAAGTGTGGtcgtatttttttttaaagagtgttGAGAAACTTCATCGAATATCACCTTGTCTGCAGAACAACAACCAAAAAATCGCTGCGAAAGGGCGCAACACTTCACATCTCTTGGGTCAATCTTCATGACCACCACCCCACTACTTTATAGCGAATGCAAGAGATGGACGTACAGCAGGCAAACCCAGTGATGCTACCGGTCCCTCCTCGTCTACAGTTGTGACACAGACACTCTAGCAAGCATTTAAAAAGGCAGGCTGCTTATGCACCCACATCAAAAAATGCTCAAGACCTCACTGTAGCCCTTTCCTATTACATTGCAAAGGACATGATGCCATTTCAAATTGTTGAGAAGCCTGAAGGTTGCCGTGCCTCACTACGAAGTGAGTGCTGCTAATTGTAtttgttgtttattttatttgctTACTTAAGGTTGTGCTCATTTAAACCTGTGCTAGGGGAACTTCTACCTGTCATGGCCACATGGTGCCATCTTTAATGTTTTTACTTTAGTGTTTATGCC

Function

NR:

description
PREDICTED: zinc finger BED domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474798.2 False 1889 mRNA 0.43 2 39501253 39503641
TU913040 True 570 lncRNA 0.44 2 39502500 39503569

Neighbor

gene id symbol gene type direction distance location
ddx23 LOC106571944 coding upstream 90054 39401035 ~ 39411199 (+)
LOC110532026 LOC106571943 coding upstream 118028 39375368 ~ 39383225 (+)
LOC110532020 LOC106571937 coding upstream 244627 39240179 ~ 39256626 (+)
LOC110531165 LOC106571934 coding upstream 263845 39111355 ~ 39237408 (+)
LOC110532019 LOC106571933 coding upstream 428868 39064150 ~ 39072385 (+)
g6pd LOC106571947 coding downstream 27818 39531459 ~ 39542666 (+)
spryd4 LOC106571951 coding downstream 135600 39639241 ~ 39640889 (+)
LOC110532038 LOC100286410 coding downstream 182187 39685828 ~ 39715886 (+)
map3k12 LOC106571953 coding downstream 227307 39730948 ~ 39747079 (+)
stac3 LOC106566701 coding downstream 346110 39849751 ~ 39855939 (+)
G802353 NA non-coding upstream 31821 39447083 ~ 39469432 (+)
G802325 NA non-coding upstream 85535 39414725 ~ 39415718 (+)
G802317 NA non-coding upstream 103160 39397878 ~ 39398093 (+)
G802313 NA non-coding upstream 110714 39390298 ~ 39390539 (+)
G802191 NA non-coding upstream 116357 39326030 ~ 39384896 (+)
G802392 LOC106571950 non-coding downstream 50546 39554187 ~ 39556665 (+)
G802399 NA non-coding downstream 54624 39558265 ~ 39562731 (+)
G802764 NA non-coding downstream 171372 39675013 ~ 39675349 (+)
G802778 NA non-coding downstream 212792 39716433 ~ 39716670 (+)
G802811 NA non-coding downstream 271826 39775467 ~ 39775699 (+)
adcy6a LOC106566714 other upstream 27696 39465931 ~ 39513879 (+)
G802324 LOC106571945 other upstream 83793 39415875 ~ 39417460 (+)
G801851 NA other upstream 567385 38932952 ~ 38933868 (+)
G802821 NA other downstream 286016 39789657 ~ 39790402 (+)
G802822 NA other downstream 288276 39791917 ~ 39792333 (+)
G802830 LOC106571955 other downstream 306686 39810327 ~ 39812025 (+)
LOC110532068 LOC106571971 other downstream 883124 40375272 ~ 40393967 (+)

Expression


Co-expression Network