LOC110532036 (LOC106571950)


Basic Information

Item Value
gene id LOC110532036
gene name LOC106571950
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 39545911 ~ 39556753 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615627.2
ACTAACCAATGAAATAAGAGCTAGATCTGCCAAGCCCTCTGTACACTGCCTTTACTTACAGTTTAATTCACATGACAGTTTTGTCCGTCGGCAAGGGTCTTTTCAATGGCAACTCCCAAGAAAGTCTGCATTATTGGCTCTGGCAATTGGGGCTCTGCCATTGCCAAGATAGTAGGTACCAATGTTGCTCACAACTCCAAGTTTGACAACACTGTGACCATGTGGGTGTTTGAGGAGATGGTGGACGGTCGCAAACTGACAGAGATCATCAACACAGACCATGAGAACGTCAAGTACCTGCCTGGACACAAGCTACCCCCTAATGTGTTGGCAGTTCCTGAGCTGGTGGAGGCTGCCAAGGAAGCAGACATCCTAGTGTTTGTGATCCCCCACCAGTTCATTGGCAGAGTGTGTGACACCATGAAGGGGAAGATAAAGATTAATGCACTAGGAATGTCACTCATCAAGGGTGTGGATGAGGGCCCTGACGGACTGAAGCTCATCTCTGATGTGATCCAGGAGAAGTTGGGCATCGCCATGAGTGTGTTGATGGGGGCCAATATCGCCAACGAGGTCGCCGATGAGAAGTTCTGTGAGACCACTATCGGATGTAAGGATAAAGAACATGGGGCTTTGCTGAAGGAACTCATGCAGACCAGTAACTTCCGGGTCACTGTAGTGGAGGAGTCCGATGTGGTTGAAATCTGTGGCGCACTGAAGAACATTGTGGCAGTGGGGGCGGGCTTCTGTGATGGCCTGGGCTTCGGGGACAACACCAAGGCCGCTGTAATCCGACTGGGGCTGATGGAGATGATCGCCTTCGCGCGCATCTTCTGCACCGCAGGGCCCGTCTCCTCAGCAACCTTCCTGGAGAGTTGTGGCGTCGCCGACCTCATCACGACCTGCTATGGCGGCCGCAACCGTAAAGTGGCCGAAGCCTTTGCCAAGACGGGGAAGTCAATTGAAGAGCTGGAGAAAGAGATTCTGAATGGACAAAAGCTCCAGGGACCAGCAACAGCAGCTGAAGTCCATGTCATCCTAAAGAACAAAAATCTGCTTGACAAGTTCCCACTGTTCAACGCTGTGTACCAGATCTGCTACCAGGGCCATCCGGTCACAGAGTTTATCAAGTGTTTGCAGAACCACCCGGAGCACATGTAGGCTAACAGACTGGCCAAGCGACTGGAGAAGCAGGATCAACGCCACTTTCACTTTGTACCTGTTAGAAAATAGATGGGAAAATACGCACACTTGCATAGTCCACAGCTCCGATGCAGCAAGCAGACTCCCAACGGACGACGTGAAGTAAGGTTAGCTTGCATTGGACTTGTGGTGTATGCTGCAGCTATTCTACTGTGTACTGTCTTTCGGGTTTTGTACGTACCTCTTGGTTTTCCTGCTCTTGGTTTTCTACAGGAGTATGATGACCCAGCATGTATTTGTTGGCGCCGAATCAGATGCCAATCTGTCCTCAGCTGTTGTTGGCACGTCCATTGTGATACCTCACTTCGTTATCGTTTGTCTTATTCATGTTAATTGTGGTTAGGTTTTGTGGCAGATGCTAGGCTTTTTGTGTCCTTTTTTCACTTGTCTTATGTAATTCTGGTTCTCTCTGCATCCTTTGGCGTTTGATTCTTGACTTGTATTGGTTGTTAGGCTTGTTGCTCGATTCAATCCATGTTGCGGAAGTTCAGCTCTATAGAACGATtagaatttaaaggcaatgttcctgcaTTCACGGAGACTACGTATGTCTGctcaatcagaaattacctttacatttcaatcgcgCTATAGTGCTCAACTTCCGCAatacggattgaatcgagcccttgATTTACATAGCAACGGTTAAAAGAAAATGCAAGGGCCTTTCAATGCCACATTGCTGAAAATTCTTGGCTGTTGTGCTTTGTGAAACAAAATACCTTTTAATATTTGTAACCATGACGCTGCCTTTGAATTGCACTAACATGTGGCTTATGTTTGAAAAGGatgtatttataaaaaaaataagattTGCCTtttgaaataaatgttttattccaGTGCCGTCAAA

Function

NR:

description
glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0046168 glycerol-3-phosphate catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009331 glycerol-3-phosphate dehydrogenase complex cellular_component
GO:0042803 protein homodimerization activity molecular_function
GO:0051287 NAD binding molecular_function
GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity molecular_function

KEGG:

id description
K00006 GPD1; glycerol-3-phosphate dehydrogenase (NAD+)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615627.2 True 2059 mRNA 0.47 8 39545911 39556753

Neighbor

gene id symbol gene type direction distance location
LOC110532033 NA coding downstream 27301 39514593 ~ 39518610 (-)
LOC110531166 LOC106571945 coding downstream 101412 39415850 ~ 39444499 (-)
LOC110532028 prim1 coding downstream 182790 39354229 ~ 39363121 (-)
LOC118966241 NA coding downstream 205965 39339872 ~ 39339946 (-)
LOC118966242 NA coding downstream 206983 39338855 ~ 39338928 (-)
LOC110532037 LOC106571949 coding upstream 3194 39559947 ~ 39634862 (-)
LOC110532039 LOC106571948 coding upstream 84126 39640879 ~ 39675631 (-)
LOC110532040 aaas coding upstream 160265 39717018 ~ 39724613 (-)
LOC110532044 LOC106571954 coding upstream 190589 39743362 ~ 39773871 (-)
kif5aa LOC106571955 coding upstream 250619 39807372 ~ 39834620 (-)
G802623 LOC106571947 non-coding downstream 3259 39481528 ~ 39542652 (-)
G802672 adcy6 non-coding downstream 38686 39505807 ~ 39507225 (-)
G802606 NA non-coding downstream 150142 39395496 ~ 39395769 (-)
G802564 NA non-coding downstream 245278 39288021 ~ 39300633 (-)
G802558 NA non-coding downstream 297447 39247759 ~ 39248464 (-)
G803065 NA non-coding upstream 125535 39682288 ~ 39682492 (-)
G803080 NA non-coding upstream 174211 39730964 ~ 39731196 (-)
G803094 NA non-coding upstream 205916 39762669 ~ 39765605 (-)
G803095 NA non-coding upstream 206609 39763362 ~ 39766061 (-)
G802609 NA other downstream 131585 39411342 ~ 39414326 (-)
G802602 LOC106571943 other downstream 162701 39380750 ~ 39383210 (-)
G802149 LOC106581475 other downstream 471191 39074481 ~ 39074720 (-)
G802138 NA other downstream 484530 39050530 ~ 39061381 (-)
G802100 NA other downstream 549879 38966456 ~ 38996032 (-)
G803170 LOC106571959 other upstream 387327 39944080 ~ 39949140 (-)
LOC110531168 LOC106571968 other upstream 404714 39961467 ~ 39996984 (-)
selenok selenok other upstream 838979 40395732 ~ 40450018 (-)
G804137 LOC106572278 other upstream 1014261 40571014 ~ 40573950 (-)
G804307 NA other upstream 1305836 40862589 ~ 40912358 (-)

Expression


Co-expression Network