LOC110531167 (LOC106571970)


Basic Information

Item Value
gene id LOC110531167
gene name LOC106571970
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 39865883 ~ 39873666 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987963.1
GTTTTCACAGAGCCATGGACCTCACGGCAGAGTGTCATTGAAGCCACTACCAACATTTTCTGACTTTTGAATCAGTCTGAAGTGTTCTAAGTTTTCTTCCAAGGGAATTGCTCCCAGACTTTGATTGCCACAGTGTCCAGATTTGTTCGACATAAGACATTCAGGGACGAGATGAGGATACTATTCATCAGCTTTGCCATCTTCTGTCTGTGGCTTCTACCAATGGTGCAGGAGGAGGATGCTGGGAAGACCTTGGACTATCTGAACCTCGATCCAAATGTTGACAACACCTCACAGCCCCTTACCTACGAAACAGGAAGGAGGGGGAAAGAAGGAAACCTTGGAGCTGCATTGAAAGTCAAACACCTTTCCAAAGATGTATCCACCAAGCCTAAGGCCTCCAGCTATAGCTCTGTGGGCCCATATGGCTGGTCACAGAACCTCTCCCTCCCCTTGGATCAGTCACAGTTTCGCTCCAAATCCAAGCCCCCCATAAAAACACCTATCAAGGTCAAGAAGACCTTTGGGTGGGGCAACTTCTACCTCAACATCAAAACCATCAAGTTCAGCCTTCTGGTGACAGGTAAGATAGTGGACCACATCAACGGCACCTTCAGTGTGTACTTCCGCCACAACTCGTCCCGTCTGGGGAATATCTCAGTGAGCATCGTTCCTCCCTCCAAAGCCGTGGAATGGGAGGATGTGGGACGCCCGAAACTCCACTTCCAGAGTCAGCCGCAGTCCACCCCCAATGAGCACCGGCAGGAGATGAATGCCCTCAACTGCGTGGTGGAGTACCAGAGGACCAACAGAGCCAAGAAAACAAAGCCATGCCTCTACGATCCCTCCCAGACCTGCTACTCAGAACACACCCAGTCTCACGCCGCTTGGATCTGTGCCAAGCCCTTCAAGGTCATCTGTGTATTCATCTTTTTTCTCAGCGCCGACTACAGACTGGCACAGAAGGTCTGTCCAGACTACAACTTCCAGGCTGATCTCCAGCACTTTGGAAGACGAGGATAGTGGATGAACTAGGCGGGTTATTAAAGCATGTTTTCCTTCATCTCCTATATCATTGGAGAaagggtagagatggagagatttgCTTGGTAGAATGGAAGTCGTCAGTACCGGGATAATATTTTGATAATACACCACTGAAGGGTAGAAGAATTACAGAATATCGAGTAGTGGttgttatagtagtggtagtagttgttaTATTTGGGGTCAAATATTGAATTGGTTGGAGTGATGCTCCATGTGCATGCCAAAGCAGCTGGTATTAGCACAACAATAATTCCTATTTTTTACTACTGTAATTATGTTTGTGTAAATTGTCTGCTTTTTTGTCACATATTGCCCATCTGTGATGGCCCTTACATTAAACCTTTTCACTATTCATTTGGGGACATATTGCAACCAAGGCACCGCATCTACACAAAGAAAATGCCAACCTAACCAATTGCTTAATGTCTGTGAGTTGAGTGGACTTCAAAAGGAAATTAATTTGAGCTAGTGTTGAGGTTTGTTTTAGCTGAATTTCAACAAGCTTGTTGAGTAAATTACAAATGTGTGTTTGCTCAAAACCACTGAAAATCACACTCATCGTTATCACATTTCCCAGGGtgctctattgcaggttgattttcagaattgtttgctTCAATAACTGTGTTGTTTGTACATTGACTGGTTGATTAATCGTATACTACACAAACATAAATAACATACTTTTTTCCAATCTAATCCAACTTGTTAGTACTTGGGTTTATTACACCCGTTACTGAGATGTTAATCTCAGTTAACCCAGAACCAGGGCGTTGCCACCCATTggagagccaggcccacccaatcagattgagcAACAACCAAagatatgtataaatatatatacacactgaacaaaaatatgaacacaacatgtaaag

Function

NR:

description
neurexophilin-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987963.1 True 1931 mRNA 0.44 2 39865883 39873666

Neighbor

gene id symbol gene type direction distance location
stac3 LOC106566701 coding upstream 9944 39849751 ~ 39855939 (+)
map3k12 LOC106571953 coding upstream 118804 39730948 ~ 39747079 (+)
LOC110532038 LOC100286410 coding upstream 149997 39685828 ~ 39715886 (+)
spryd4 LOC106571951 coding upstream 224994 39639241 ~ 39640889 (+)
g6pd LOC106571947 coding upstream 323217 39531459 ~ 39542666 (+)
LOC110532052 LOC106571959 coding downstream 66099 39939765 ~ 39946085 (+)
LOC110532054 NA coding downstream 87805 39961471 ~ 39962986 (+)
LOC110532055 gnas coding downstream 139430 40013096 ~ 40046553 (+)
LOC110532057 LOC106571964 coding downstream 183142 40056808 ~ 40063855 (+)
LOC110532060 if2b coding downstream 202186 40075852 ~ 40085818 (+)
G802831 NA non-coding upstream 48768 39814175 ~ 39817115 (+)
G802820 NA non-coding upstream 77645 39787896 ~ 39788238 (+)
G802811 NA non-coding upstream 90184 39775467 ~ 39775699 (+)
G802778 NA non-coding upstream 149213 39716433 ~ 39716670 (+)
G802764 NA non-coding upstream 190534 39675013 ~ 39675349 (+)
G802875 NA non-coding downstream 7528 39881194 ~ 39894131 (+)
G802900 NA non-coding downstream 43473 39917139 ~ 39949106 (+)
G802919 NA non-coding downstream 77135 39950801 ~ 39951044 (+)
G802920 NA non-coding downstream 77465 39951131 ~ 39951528 (+)
G802922 NA non-coding downstream 78756 39952422 ~ 39954470 (+)
G802830 LOC106571955 other upstream 53858 39810327 ~ 39812025 (+)
G802822 NA other upstream 73550 39791917 ~ 39792333 (+)
G802821 NA other upstream 75481 39789657 ~ 39790402 (+)
adcy6a LOC106566714 other upstream 392326 39465931 ~ 39513879 (+)
LOC110532068 LOC106571971 other downstream 513099 40375272 ~ 40393967 (+)
G803437 selenok other downstream 569230 40442896 ~ 40449939 (+)
G803457 NA other downstream 593962 40467628 ~ 40468002 (+)
G803728 NA other downstream 1147270 41020936 ~ 41021502 (+)
LOC110532096 LOC106572259 other downstream 1561218 41423598 ~ 41452922 (+)

Expression


Co-expression Network