LOC110531168 (LOC106571968)


Basic Information

Item Value
gene id LOC110531168
gene name LOC106571968
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 39961467 ~ 39996984 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986942.1
ATGGCGGGGGATATTGTGGTGGGGATTCTCTATAACTTAGTATTACCTCTTCTTCTGCTTGCAGGAAAAACAGGGAAGTTCCTGCTGCTCATCTGTTCTACCAGCGTGACGTTTCTGGCTCTCCAGTGTTTCATGCAGATCACTTTTGCCTACGTACCTCAGAATGAGAACGAATATTGGGAAAATGTTCTCTACCATTTGGGCATTGTACGGTTCAGTTTGGTGGATGCAGGGAACACTTTGCGTCTCTTAGCCCCTGATCTGGGGCTCTTCCTGTCTGGGCTCTTCATACTCTGCCTGGTCAGGAAGCTGCTGTGCCCCGCGCCACAACTTAATGTCCACGAGAACTGCATCAAACCTTCTGACCCTGAGGATGTGGAGATGTCCGACTCAGAGTCTGAAGTCGAAAGTGATGTCACAGATGGCTCGTCCTGTGACAGCTCAGATGAAATCACAGCGGCGCCGGTAACCCCTCCTCAGTTTGTCCAGAAGTTTATTGCATTTGCCCTTGGACTGCGCCTCTTGCTGTCCGCCATCATGAACACAGCAGGGAAAGTAGTGGTCACCATACTACTGGGGCTGGCAGGCATCGCCCTACCCTCCCTGACTTCGGCAGTGTATTTCGGGACATTCCTGGGCctggtgtggtggtgggtgtttctCCGCTCCCTCAGCCTGCTGTTTTTCAGTACCCTCTGCGTGATGATGGCTATATTCAGCGCTGGTCACCTGCTGTGCCTCTACCTGTACCAGCTTCCCCTGGCCCAACAGATCGTACCCCCACAGGACATCTACGCCAGGCTGTTTGGTATGACAGCGTTCATCCGGACCAATGAGACTGAGCCATACAGTCTGGGTCTGCAGGCAGATGTCAGCTGGCCTGTCTTCATCAACCCCATGGTGCTGCTGCTCCTCTATTACACAATGGTGGCTTTGCTGCACAAGTGGGTCTACATCCCCGAAGAAGAGGATACTCTGGTGAAGTCTGAGAGTCCAGTAGAAATCCCAGAGGATCCCCCCAGCTTCTCCAAGATCTTATTCATCTCAGGAGACAGACTGGAGCTACTGACCAGTACGGATGAGGAAACTTACATGCCAGATGAGGAGGTGCAGGAGgggaggagtgaggtGTCTATGAGCGAGGGGATGAGTGAGGTGTCTATGAGGGAGGGGATGAGTGAGGTGTCTATGAGCGAGGAAGAGAATGGCCCCAGTGGACTGGCTGTGTTTGGCCTGTTCATCATGAAGCACAGCTACATCAGCGCACTCATCATCATGATGGTGTGGAGCATCACCTATAACAGCTGGCTGACGTTCGCCCTGCTGGTGTGGTCGTGTGTGATCTGGATGATGCGTGACCGTCGGCGCTACGCCATGATGAGCGCTCCCTTCCTGGCGGTGTACGGCACCTTGCTGTTGCTGCTCGCCTTCCTGAGCGGCCTGAGGCTGCGGCGGGATGAGCTGTACCCTGGCCTGCCACATGCCATGCTGGTGGACTTTGACATGGCCATCTACCCAGCACCCTGCATCCACCTGGGAGGCAAGGTGTTGTACACCTTCAGCTTTTGGCTGCTGTTCCGGCAACAACAGAAGGAGAAACAGGAAGAGCAGGATCTCAAGGAGTCTGACGAGTATCTGGAAGAAGTGAAAGTACTCCCATcgGAGGAAGGTGAAACCTCTCCCATAATGGAGATGCTGGGTTCAGCGGTCAAGGGAACCCTGGTGAAGTACTGGATCCTGTTCTGCTGCTCCATGTTCTTTGTGGTCAGCTTCTCCGGGAAGGTGATGGTCTACAAGATCCTCTACATCGTGCTGTTCCTCTTCTGTGTCGTCCTCTACCAGATCCGTTGTGACGTGTGGAGGCGAGTGCTGAAGTACTTCTGGGCGGTGGTGGTGGGCTACTCCATGGTGGTCCTGATTGCCATCTACATGTACCAGTTCAAGACTGTCTCTGGCCTGTTCAGACAGATCATGGGCATGTCTGAGGAAGGTCTGCGTGATCTCGGGTTGGAGCAATATGATACTGTGGAGCTGTTTGCTCGGATCCTCCTCCCTGCAGCCTTCCTATTGGCCTGCATCCTGCAGCTACACTACTTCAACCAGGACTTCCTGGATCTCACCAACCTGGACAACGTACCTGTCCACCACGGACCAACCAGAGAGGAGGAGCTGAGGAACTCCGTCAATGTGATAGCTGACATGATGGCGAAGGAGCAGAGCGAGCAGACGAGTGGGGAGTCGGAACGTGTGGGGAGTCAGGACACGTTggataatgatggactgtctgcCTCATCAGAGAAACCtgaggaggagcaggggggaaCAGTTCCCCCAGAGGAGCGTCTGACCCAGTGGGGGTTGATTGTGGACCGGGCCAGCCTGCTGCTGTTCCAGGCTCTGGCTCTCTTCCAGCGGGCTCAGGAGATGGGCTGGAGGCTGCTGGAGGTTCACAGCCTCAAGATTGTTTCCACTGGCATCATCTGGGTGTCCCTACAAGAGGTGTCCCTGATGAACTTCATGTTCCTGGTTCTGTGGACCTTCGCCCTGCCCTTCCCCCGGCTCCGCCCCATCGCCTCCAGTGTGTCCTCGGTCTGGGCCTGTGTCATGGTGGTGTGTAAGATGCTGTACCAGCTCAAGGTCATCAAACCTCTGGAGTACTCCTCCAACTGCACCGCCGTGAGTTCACTTACCACTAGCATGCGAAACACTGATCAAATATTCACTAAGCTGCTGAGGAGGTCTGTGCTGTATGTGAAGCCTGTTGACCCAGCCATATGGTGTGGAGCCCTGCGCAAGTGTGAAGACAGGATCCTGCCCTGTCTCAGCAACCACCTGACGGTGCTGGGGCTGCTGGTGTTTGAGGTGACGGTCTCTCGACACCAGCTCTACTACCGCCTTCACAACAACCTCAAGGTCCCCACCTTCAGCATTATCTTCCAGGGCATCACACGCCAGCACCTGGACCATGGCATCCTGCCCTGCATCAAGTACTTCGTCAACTACTTCTTCTACAAGTTTGGCCTGGAGGTGTGCTTTGTGGTGGCGGTGAATGTGATTGGCCAGCGGATGGATTTCTACTCGCTGCTGCACGCCTGTGCCCTGATGGCCGTTCTGTCACGACGACGCAGGAAGGCCATGGGGGAGGTGTGGCCTAAGTACTGCTGCTTCACTGCAGGACTCATGGTGCTGCAGTACCTGCTCTGTATCGGCATCCCTCCCGCTCTCTGTGTCGaTTATCCATGGAGGACCTCCAGTCAGGCTTTGACCTCCAACCTCATCAAGTGGCTTTACCTGCCTGACTTTGCCATGCGTCCCTCCCCTTCCTTCATCCTCTACGACCACCTCCTGCTGCTGTGCTCCACGCTGCAGTGGCAGGTGTTTGAGGAGGAGAACAGGGCTGCCGTGCGCCTCATGGCAGGGGAGAACGTGGAGATCAGCCGCAGCTTGGACCCGCGTTCCTTCAACCAGTACATTCCCGTCAACAACTTCCTCCAATGCAGGTCCTACCTGGACATCGCCAAAGTGTTTGTGTTCAGCTACTTCTTCTGGCTAGTGCTGTGCCTCATCTTCATCACGGGCACCACCCGCATCAACATCTTCTGCCTAGGCTACCTGGTAGCCTGCTTCTACTTCATGCTGTTTGGAGGAAGCCTGCTAATGAAGCCCGTACGATACATCCTCAGGCTCTGGGACTGCCTCATCGGATACACTTGCTTCGTCATTGGCATGAAGAACCTGCTATCGCTTGGCTCGTGTGCTTATCTGGACAGCCTGTTGAAGAATGGCTGCTGGCTCATTCAGGCCTTCAGCATGGTCTGTACAGTCAAAGGCTATGATGTCTGTAAGTctGCTCCTGATGATGAGTGTGAGCTGCCGGAGGGGGAGGCGGGCATTGTGTGGGATGCGATCTGCTTCACCGTGCTCTTGGCTCAGAGAAGGGTTTTCCTCAGCTACTACTTCCTGTATGTGGTGTCTGACCTCAGGGCATCCAAGATCCTGGCCTCCAGGGGTGCTGAGCTCTTTGAAGCCAAGGTGAAGAAACTGGTTGCTGCCAGactggagatggagaggaagtcTGTGGCGACGCTGAAGAAGCAgatggagaagatCAAATCCAAACATAAGAGTAAGCCTGGCCAGGGAGACGCAGCAACGCCCCCTGCTGATATAGTGCCAAAGGGTGAGAGTGAGAAGGCTGGGAACGATCAGGGGAAATGGTGGAAACCATGGGTCTCTCGGCCTGGCGTTGAGAACAACTGTGGCTACCATCTTTTTGAGAGTGAcagtgaagaggaagaggaggaagtccaggaaaagaaagaggaagaggctACACTAAAGAAGAAATCTTCTTTTCAGATAGCCTATGAGGCATGGGCCACAAGCTCCAAAGCAGCCCTGGATTTGCACAAAAAAGAAGAAAACAAGATGAAaaatgaggagaagaggagggcaaAGAGAGAGCTGCAAAGACAGCAAGGCATTGAGAGAGCCGAGTCTCACGAGTCGGACGAGTTGGAGGTGGAAGAGagcgatgaagaggaggagaaagATAACCTATTTCAGAGGATCATCTACTCACTCAAGTTTCTATGGGTGTTTATCCTGTCCCTTTTGGATGACGTCACTGAGGGCCTTAACTCTTTCTGCAAAGATAACCAGGACATCACCAAAGTGCTGCGCTTTGAGAGGGCTCTTCTTGGCCAGCAACAGAAAAAGGGGAAAGAAGTGTCACAGGAGAGCGTGACGCGCTTCTATGAGAACTGGATGTCTAGGCAGAGCACTCTGGCCTCGCTGGAAGACCAAGATGACATagttctccccatctcctccccaccACCTGTACCCTCATCACCGCGAGGTTACTCAAAGCTGAAACACACCCATTCCAAAATCTCCTGGGGTAGCAGCTTGTCCAGCTGCGTGACCGACGAGACCCTGCTGGGGTCTCGACAGCCCACTCTGGATGAGCTGGATGACCCTCCTCTACTCCAGCCAACTGCCGAGCAACTCAGACGGAAACTACTGAAAACTGCCAACCTGGACCTTGGCTCATTTGACAGCGAAGTCCCTCCACCAAGCAGCCATGATGATACTGTTCCTGATAAGGAGGACCGTGAAGGAGAGGATGCATGTAAAAAGGAGGGGGAGTCTACAGCGGAGGAGGAGTATAGAATGGagaaagaggaatggagggaggaagaagaggaagagagggaaaaagCTGTGATGTTTTCGGGATTTATCTCCCTGGACTATCTGGAGTGTAATGAGAAGTGCGACGATTTCCCAGACTCCCCCCGGCCTCTGAGTGAGACCAGGAACCTCACGGCTAGTGAGCTGCTGCTCAACAACATGTTTGAAGACGATGAAATTGAAGAGTCTGATAAGTTTTTCCAGTCTCTCCCGAGGCACCTGAGACTGGTGTTTGCCCTGTACAACACCATGGTGTCGAAGTCAGAGATGCTGTGCTACTTTGTGATCATCCTGAACCACATGGTGTCTGCCTCCCTGCTCAGCCTGATCCTGCCTATCCTCATCTTCCTCTGGGCCATGCTGTCTGTGCCTCGCCCAACCAAGCGCTTCTGGATGACTGCCATCATCTACACAGAGCTGATTGTGGTGGTCAAGTATTTTTTCCAGTTTGGCTTTTTCCCCTGGACCACCTCGGTCTACCGAGGCATCAATGCAGACCGGCCCTTTGCTCTGCCCAACATCATTGGGGTAGAGAAGAAATATGGCTATGTTCTCTTTGACTTGATACAAATGCTGGCTCTGTTCTTCCATCGCTCCATTCTGAAGTGCCACGGTCTTTGGGATAACAAAGAGGTGGAGATGCCAGACTTCTTCAAGAAGTTAAAGAAGAAGACGGAGAAGATtaagatgagtggaggagaaaaaaaaggggaCGAGCCGAAGCGAAGACtgccctgcctccctctccagGCCTCGACTGCGTCCTTGTTTTGCAGATGTGGAAAAGCCAACTCCACTGAGACAAACGGTGATATGCGGCTCACAAAGTGCCACTCCAAGAAGAAGAGGCACCACAATAAAGTTCCCCTGACCAGGAAGGAGAGCATCAAAAAGCTGATTAGAGAAAGGATGCTGGAGGCTAAAGCTGCTATCATTGAAGTTGCCCTGCATATATACCTACCCATCAGGCAGTTCTTCTATGACATAATTCACCCAGAGTGCAGCCCGGTGTGTGACGTCTACGCTCTCATGTTTCTGATTGACGTGGTCAACTTCATTGTCATCATATTTGGATACTGGGCGTTTGGGAAACACAGTGCTGGTGCTGACATCACAGATGCTCTTGGGGAGGACCAGGTCCCATCGGCCTTCCTGGTCATGCTGCTCATCCAGTTTGGCACCATGATTGTGGACCGCGCTCTGTACCTCCGCAAAACCCTAATGGGAAAATGTGTCTTCCAAGTGGTGCTGGTGTTTGGTATCCACTTTTGGATGTTTTTCATACTCCCTGGGGTGACTGAGAGGAGGTTCAACATGAACCAGGTGGCACAGTTGTGgtactttgtgaagtgcatctACTTTGGCCTCTCCGCCTACCAGATCAAGTGTGGCTACCCAAATTGTGTGCTGGGAAACTTCCTGACCAAGAACTACAACTACCTCAACCTATTCCTTTTTCAAGGGTTTCGCCTGGTTCCGTTCCTCATAGAGCTGCGTGCCGTGATGGACTGGGTCTGGACCGACACCACCCTCAGCCTGGGCAGCTGGATCTGTGTCGAGGACATTTATGCCAACATCTTCATACTCAAGTGCTGGAGGGAGTCGGAGAAGAAATACCCACACATCCCAGGGCAGAAGAAGAAAATGGTGGTGAAGTATGGAATGGGTGGCTTCATCATATTCTTCCTCATCAGTGTCATCTGGTTCCCCCTCCTCTTCATGTCATTGGTCAAGTCAGTGGCTGGAGTGACCAATCAGCCTCTAGATGTCTCTATTCAGCTCAGCATAGCAGGATATGAGCCAATGTTCACAATGAGCGCCCAGGAGCAGAACCTGGTGCCATACTCAGTTGCAGGCCTCAACCGGCTCAACAACCTCTATGCCACTCACCCATCAGCTATGCAGTTCCTTGGGAACTACATGGCCGAGGACATTGTCATTGCAAAGATCAAGAGTGATGCCAGTCTGCTGTGGAGCATCAGCCCTGCCAGCCGTGACGCTATGATCCATGAACTCAGCAACTCCACCCATATCTACATCACCCTGCGATGGGTACTACTCAGGAATGCGTCTCTGTCGATGAACGTGGAGACCATGGGGGAACACACTGTGAAGTATGAGGACCGGACCCTGAGGGATCAGATCGTTCAGATGCTCAAAGGGACACGCAGTGACTCTGTGATCATTGAGTCTCTCCTGCCCAAGTTCCTCAGAGGTTCCGGAGGACCTGTGTCCAATATGGCCACCCGTCTGAAAGTAGAACACTCAGATCGGCCTGAGGACCTGCAGACTTTTGCCTTCTTCTTGCCCCTGTCCATCAAACTACAGCGCGCAGAAGACAACGGAAGTGCAGAGGGGGGTCAGTGGTGGATAGTGCAGGAATGCACTCCTGGAAAGGGGCACATCCAGAGCAGCTGCCACAAAATTGAGATAGTGGTGTTCAACGACAAAGTCAGTCCCCCCAGCCTGGATGCTCTTGCGGGACAGGGAATCGTGGGCCTGTACATGTCTGTGGTGCTGGTCGTCGGGAAGTTTGTCAGGGAATTCTTCAATGGGATATCCCGCTCAATTATGTTTGAGGAGCTGCCGTGTGTGGATCGGGTGTTGAAGCTCTGCACGGACATCTTTGTTGTGCGAGAGACTGGCGAGATGGAGCTGGAGGAAACACTGTTTGAGAAGCTCATCTTCCTGTATCGCTCACCGGAGACCATGATCAAGATTACCAGAGAGAAGAGCGACTAGAGAGCATGATGACATTTGTTATGAAGAGGACGATTTGGGTTTTGGTTCttatctggggtgtattcatcATGCCGATTTTGCAACAGAAACCGTTCACTCAAAGGTTTTGTAACAAactagtttctattggacaaattcaggtaggtccctccctgtttcgtTTAAGAACCAAACAGCTTCCATTGCAagatgtaatgaatacacccctggagTTGCACTTTTGATTGTACTCCTGCACAATGCATGCATTTTTCAGTGACTTATGATTTTACAACGGAAGACCATAGGCCAATCAGAAGTGTTCcaaatgttaaacaatttaatttaaGTTTAGTTGCAACATCATAGATGTTTTGTATAAAGCTGATAGAAATACATTATGTAGAACagacctgcttctctctctcaacattctgAACACGACCCCGTTTCATTCCACTGAAAAGCTCATCTAAAAGTATTCATTCTCATTTCACACTGTAGTTCATGTACAGTATTTAATTCAATGAATAAAATATTTGAACTACAAGGCCAAGTTCAGAGCTTTTAGCCTACTTTTACGTGTTCACAGTTAATATTGCCAGATAAAGCATGAGTTAATCTAGCAGACAATTATTTTTAGATGGGAGTTTTATTTCATTTTCTTAATTACAAATTATAAAGGGGAAAAATCTATTATGTTAAGTTTTCCATCTCTCGACAAATCTAGATGTAA
>TU914000
caaatgttaaacaatttaatttaaGTTTAGTTGCAACATCATAGATGTTTTGTATAAAGCTGATAGAAATACATTATGTAGAACagacctgcttctctctctcaacattctgAACACGACCCCGTTTCATTCCACTGAAAAGCTCATCTAAAAGTATTCATTCTCATTTCACACTGTAGTTCATGTACAGTATTTAATTCAATGAATAAAATATTTGAACTACAAGGCCAAGTTCAGAGCTTTTAGCCTACTTTTACGTGTTCACAGTTAATATTGCCAGATAAAGCATGAGTTAATCTAGCAGACAATTATTTTTAGATGGGAGTTTTATTTCATTTTCTTAATTACAAATTATAAAGGGGAAAAATCTATTATGTTAAGTTTTCCATCTCTCGACAAATCTAGATGTAACCCTTGCGTTGTCATCCATCACAAAGATATGTTGGCCGGGACAATGACAAATCCTCTTGGTCCCGAAGAACATCCATTACATGATGACGTACTCAGATGCTACAGCCTTTGGTACGTAGACTTTGACGCTGGACTCGGCAACCTTCAGTGCCTCGACTTTGAACTGGGGTTTCAGTGCCGCACGCACTGCACTTGCGCAGATCGCAGAGAAGCGAATGCTAAGGCCAGCTTGTCTCCAGTATGCAACCATTTTGCCAGCAATGTTTCGTTCAAGGACAACTCGGAAATGTGCGTGATGACGTCGTTAGCGTGGACCCGTCTTCTTTTGGGGGATTTGGTTGGCGGATCGCATCCGAATTTTAAGTGCAtataccgccacc
>TU914001
AGACGATGAAATTGAAGAGTCTGATAAGTTTTTCCAGTCTCTCCCGAGGCACCTGAGACTGGTGTTTGCCCTGTACAACACCATGGTGTCGAAGTCAGAGATGCTGTGCTACTTTGTGATCATCCTGAACCACATGGTGTCTGCCTCCCTGCTCAGCCTGATCCTGCCTATCCTCATCTTCCTCTGGGCCATGCTGTCTGTGCCTCGCCCAACCAAGCGCTTCTGGATGACTGCCATCATCTACACAGAGCTGATTGTGGTGGTCAAGTATTTTTTCCAGTTTGGCTTTTTCCCCTGGACCACCTCGGTCTACCGAGGCATCAATGCAGACCGGCCCTTTGCTCTGCCCAACATCATTGGGGTAGAGAAGAAATATGGCTATGTTCTCTTTGACTTGATACAAATGCTGGCTCTGTTCTTCCATCGCTCCATTCTGAAGTGCCACGGTCTTTGGGATAACAAAGAGGTGGAGATGCCAGACTTCTTCAAGAAGTTAAAGAAGAAGACGGAGAAGATtaagatgagtggaggagaaaaaaaag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986942.1 False 8653 mRNA 0.52 51 39962571 39996984
TU914000 False 791 TUCP 0.40 3 39961467 39962981
TU914001 True 542 TUCP 0.49 3 39967244 39967974

Neighbor

gene id symbol gene type direction distance location
LOC110532053 LOC106571960 coding downstream 2617 39952412 ~ 39959954 (-)
actr5 actr5 coding downstream 29861 39919618 ~ 39932710 (-)
LOC110532049 LOC106571957 coding downstream 59908 39899065 ~ 39902663 (-)
LOC118966201 NA coding downstream 103379 39859077 ~ 39859192 (-)
LOC118966202 NA coding downstream 105048 39857408 ~ 39857523 (-)
LOC110532056 LOC106571963 coding upstream 54032 40051016 ~ 40055551 (-)
LOC118966046 NA coding upstream 138468 40135452 ~ 40152692 (-)
LOC110531170 LOC106571977 coding upstream 186986 40183970 ~ 40204192 (-)
LOC110532066 LOC106571976 coding upstream 210040 40207024 ~ 40219392 (-)
chdh chdh coding upstream 332397 40329381 ~ 40339571 (-)
G803186 NA non-coding downstream 11557 39950803 ~ 39951014 (-)
G803108 NA non-coding downstream 172286 39789152 ~ 39790285 (-)
G803107 NA non-coding downstream 173614 39788729 ~ 39788957 (-)
G803095 NA non-coding downstream 196510 39763362 ~ 39766061 (-)
G803214 NA non-coding upstream 8114 40005098 ~ 40005442 (-)
G803216 NA non-coding upstream 10668 40007652 ~ 40008019 (-)
G803218 NA non-coding upstream 12391 40009375 ~ 40009581 (-)
G803247 gnas non-coding upstream 43561 40040545 ~ 40046580 (-)
G803258 NA non-coding upstream 68086 40065070 ~ 40065675 (-)
G803170 LOC106571959 other downstream 13431 39944080 ~ 39949140 (-)
G802609 NA other downstream 548245 39411342 ~ 39414326 (-)
G802602 LOC106571943 other downstream 579361 39380750 ~ 39383210 (-)
G802149 LOC106581475 other downstream 887851 39074481 ~ 39074720 (-)
G802138 NA other downstream 901190 39050530 ~ 39061381 (-)
selenok selenok other upstream 398748 40395732 ~ 40450018 (-)
G804137 LOC106572278 other upstream 574030 40571014 ~ 40573950 (-)
G804307 NA other upstream 865605 40862589 ~ 40912358 (-)
wdr6 wdr6 other upstream 908388 40904738 ~ 40916073 (-)
G804255 NA other upstream 987498 40984482 ~ 40985245 (-)
G803207 NA non-coding upstream 28537 39996511 ~ 39996916 (-)

Expression


Co-expression Network