LOC110532058 (LOC105026338)


Basic Information

Item Value
gene id LOC110532058
gene name LOC105026338
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 40086011 ~ 40090648 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987969.1
CAAATTAATTCTAGGTAATCATAGGATTTAGATCAAAATACGTTTTACATGTTAACAGTTTTTTCATTGTGAGGTGTGATTGTCTGAACAGCGCGACTGCAATGAAGACTACCTGGAACGCAACCTAAATTGCCGACGCATGTGCAGTGAATGCACTTCCTATTCCGCTCAACGCGCTGCGTTTTCTTCTTTAACCAAGCTTATTTTCAACGTAAAAAAAGTAACCGCGTGTTGGCTCAAGACAATCCGACGTCATGAGCTTGTTTGGGACCAGCACTGGGTTTGGCGCAGGGGGATTCGGAGCGGCAACCACGGACACACACAACCCAATGAAGGATGTGGAAGTAACCTCACCCCCAGATGACAGCATCAGTTGCTTGGCGTTTAGTCCCCCTGCCATGCCAGGGAACTTCTTGATAGGGGGGTCCTGGGCCAATGATGTGAGGTGTTGGGAGGTACAGGACAATGGGCAGACAGTCCCCAAAGCCCAGCAAATGCACACAGGTCCAGTCCTTGATGTCTGTTGGAGCGAAGATGGAAGCAAGGTTTTCACTGCATCTTGTGATAAGACTGCCAAAATGTGGGATCTCAACAGCAACCAGGCAATACAGATCGCACAGCATGATGCTCCTATCAGAACAGTCCACTGGATCAAAGCCCCCAACTACAACTGCATCATGACAGGCAGCTGGGACAAAACTCTGAAGTTCTGGGACACCCGTTCGCCCAACCCAATGATGTCCCTGCAGCTGCCGGAGAGGTGCTACTGTGCAGACGTGGTGTATCCCATGGCAGTGGTAGCATCGGCAGAGCGAGGTTTGATTGTATATCAGCTTGAGAACCAGCCGTCCGAGTTCAGGAGGATAGACTCACCACTCAAACACCAGCACCGCTGCATAGCCATCTTTAAGGACAAACAGAACAAGCCTGCTGGATTTGCTCTTGGGAGCATTGAAGGGCGGGTCGCCATTCACTACATCAACCCTCCTAACCCAGCCAAGGATAACTTCACCTTCAAGTGCCACAGGTCGAATGGAAccaacacaaccacaccacaagaCATCTATGCTGTGAATGCCATCTCCTTCCACCCTGTCCACGGTACACTGGCGACTGTTGGGTCTGACGGTCGCTTTAGCTTCTGGGATAAAGACGCTCGCACCAAGCTGAAGACCTCGGAGCAGCTGGACCAGCCAATCACAGCTTGCTCGTTCAACAACAACGGCAACATCTTTGCCTACGCCTCTAGCTATGACTGGTCAAAGGGGCATGAGTACTACAACCCTCAGAAAAAGAACTACATCTTCCTGCGTAATGCTACTGAGGAGCTGAAACCTCGGAATAAGAAATGATCTGTCCTGTCTCTCCTGCTGTTTGCAAAATGGAGGTTTGTCAAACGCACACGTGATGCCTGCACGACTCTGTTCCTATCCTGTGCCAACACCAATGGTGGAGCTGCTGCTTGCAAAAGGACCAATCACTGGAGGTCTTTCATCTTCTTGGCATTGGCCTGGATCTCTGTCCCAGCCACATGCATCCAAATAGGGGTTGGAGAGTGAGGAGATGATATTGTTTTGTAATATCtgatattttattttctattgtcagtagctaggtttccgtCGAATTGCTGACAGatttttcatgtgaatattcttaAATCTGCTGAAACTAAATCTGAAAACAATGTGTGCATTtttccaccagagatgtttccatccaATTGATTTTTTGTGGGTAGAAGGATGTGCTTGATGGCATAGTGCACATACAAATAACGTTtgtggttaaattcccatgtactaaataaaaattacaaatgaaatgggtttccatcgcattttcaactcttgatggttttgtcacaaaaatgTTTGTTATATAGCGAATGTGGCCATAGGCACGTGCGCTCCAGCTAACAGCAGGCAGATAGTGTGGGTTTAGCCTACTACTACAGGATAAGATTATTATGGTCAAAAGAGCAAGATTATTTGTATTtatcaaacggcagccaagcatagatcatgtcaccagaataagaccctcaacaTTTATTGGAAAGTAGCAtcaaagctcatcaccgtgcactccCCGCCCTGTGAAGTttatcataacttatttcatcgcATGACTCCCAAGTTTACTTCGTTATTATATCAACATTTGCGCATAAAGCATTTCCACCGCCATTACTCGCATAATTACATTTACAAAGAAAATATGCCACGTCTAGCAtattgttttgtcgacattttaaaagtttaccgacaaatttgctgtttccatcaggcctggcATTAAATATTTTATCCAACGTACTTTACTCACATACagagttggatggaaacctggtaaCTGACACCATGATTGCATGGTGCTCTGTTACATTGTTGTACAATTTAATGACATTGAAGAATTAAATAAATTAGTAAATAAAGACAA
>XM_036987968.1
CGCGACTGCAATGAAGACTACCTGGAACGCAACCTAAATTGCCGACGCATGTGCAGTGAATGCACTTCCTATTCCGCTCAACGCGCTGCGTTTTCTTCTTTAACCAAGCTTATTTTCAACGTAAAAAAAGTAACCGCGTGTTGGCTCAAGACAATCCGACGTCATGAGCTTGTTTGGGACCAGCACTGGGTTTGGCGCAGGGGGATTCGGAGCGGCAACCACGGACACACACAACCCAATGAAGGATGTGGAAGTAACCTCACCCCCAGATGACAGCATCAGTTGCTTGGCGTTTAGTCCCCCTGCCATGCCAGGGAACTTCTTGATAGGGGGGTCCTGGGCCAATGATGTGAGGTGTTGGGAGGTACAGGACAATGGGCAGACAGTCCCCAAAGCCCAGCAAATGCACACAGGTCCAGTCCTTGATGTCTGTTGGAGCGAAGATGGAAGCAAGGTTTTCACTGCATCTTGTGATAAGACTGCCAAAATGTGGGATCTCAACAGCAACCAGGCAATACAGATCGCACAGCATGATGCTCCTATCAGAACAGTCCACTGGATCAAAGCCCCCAACTACAACTGCATCATGACAGGCAGCTGGGACAAAACTCTGAAGTTCTGGGACACCCGTTCGCCCAACCCAATGATGTCCCTGCAGCTGCCGGAGAGGTGCTACTGTGCAGACGTGGTGTATCCCATGGCAGTGGTAGCATCGGCAGAGCGAGGTTTGATTGTATATCAGCTTGAGAACCAGCCGTCCGAGTTCAGGAGGATAGACTCACCACTCAAACACCAGCACCGCTGCATAGCCATCTTTAAGGACAAACAGAACAAGCCTGCTGGATTTGCTCTTGGGAGCATTGAAGGGCGGGTCGCCATTCACTACATCAACCCTCCTAACCCAGCCAAGGATAACTTCACCTTCAAGTGCCACAGGTCGAATGGAAccaacacaaccacaccacaagaCATCTATGCTGTGAATGCCATCTCCTTCCACCCTGTCCACGGTACACTGGCGACTGTTGGGTCTGACGGTCGCTTTAGCTTCTGGGATAAAGACGCTCGCACCAAGCTGAAGACCTCGGAGCAGCTGGACCAGCCAATCACAGCTTGCTCGTTCAACAACAACGGCAACATCTTTGCCTACGCCTCTAGCTATGACTGGTCAAAGGGGCATGAGTACTACAACCCTCAGAAAAAGAACTACATCTTCCTGCGTAATGCTACTGAGGAGCTGAAACCTCGGAATAAGAAATGGTGA
>XM_036987966.1
CGCGACTGCAATGAAGACTACCTGGAACGCAACCTAAATTGCCGACGCATGTGCAGTGAATGCACTTCCTATTCCGCTCAACGCGCTGCGTTTTCTTCTTTAACCAAGCTTATTTTCAACGTAAAAAAAGTAACCGCGTGTTGGCTCAAGACAATCCGACGTCATGAGCTTGTTTGGGACCAGCACTGGGTTTGGCGCAGGGGGATTCGGAGCGGCAACCACGGACACACACAACCCAATGAAGGATGTGGAAGTAACCTCACCCCCAGATGACAGCATCAGTTGCTTGGCGTTTAGTCCCCCTGCCATGCCAGGGAACTTCTTGATAGGGGGGTCCTGGGCCAATGATGTGAGGTGTTGGGAGGTACAGGACAATGGGCAGACAGTCCCCAAAGCCCAGCAAATGCACACAGGTCCAGTCCTTGATGTCTGTTGGAGCGAAGATGGAAGCAAGGTTTTCACTGCATCTTGTGATAAGACTGCCAAAATGTGGGATCTCAACAGCAACCAGGCAATACAGATCGCACAGCATGATGCTCCTATCAGAACAGTCCACTGGATCAAAGCCCCCAACTACAACTGCATCATGACAGGCAGCTGGGACAAAACTCTGAAGTTCTGGGACACCCGTTCGCCCAACCCAATGATGTCCCTGCAGCTGCCGGAGAGGTGCTACTGTGCAGACGTGGTGTATCCCATGGCAGTGGTAGCATCGGCAGAGCGAGGTTTGATTGTATATCAGCTTGAGAACCAGCCGTCCGAGTTCAGGAGGATAGACTCACCACTCAAACACCAGGTGACTGGTTTCACATACCAGCACCGCTGCATAGCCATCTTTAAGGACAAACAGAACAAGCCTGCTGGATTTGCTCTTGGGAGCATTGAAGGGCGGGTCGCCATTCACTACATCAACCCTCCTAACCCAGCCAAGGATAACTTCACCTTCAAGTGCCACAGGTCGAATGGAAccaacacaaccacaccacaagaCATCTATGCTGTGAATGCCATCTCCTTCCACCCTGTCCACGGTACACTGGCGACTGTTGGGTCTGACGGTCGCTTTAGCTTCTGGGATAAAGACGCTCGCACCAAGCTGAAGACCTCGGAGCAGCTGGACCAGCCAATCACAGCTTGCTCGTTCAACAACAACGGCAACATCTTTGCCTACGCCTCTAGCTATGACTGGTCAAAGGGGCATGAGTACTACAACCCTCAGAAAAAGAACTACATCTTCCTGCGTAATGCTACTGAGGAGCTGAAACCTCGGAATAAGAAATGATCTGTCCTGTCTCTCCTGCTGTTTGCAAAATGGAGGTTTGTCAAACGCACACGTGATGCCTGCACGACTCTGTTCCTATCCTGTGCCAACACCAATGGTGGAGCTGCTGCTTGCAAAAGGACCAATCACTGGAGGTCTTTCATCTTCTTGGCATTGGCCTGGATCTCTGTCCCAGCCACATGCATCCAAATAGGGGTTGGAGAGTGAGGAGATGATATTGTTTTGTAATATCtgatattttattttctattgtcagtagctaggtttccgtCGAATTGCTGACAGatttttcatgtgaatattcttaAATCTGCTGAAACTAAATCTGAAAACAATGTGTGCATTtttccaccagagatgtttccatccaATTGATTTTTTGTGGGTAGAAGGATGTGCTTGATGGCATAGTGCACATACAAATAACGTTtgtggttaaattcccatgtactaaataaaaattacaaatgaaatgggtttccatcgcattttcaactcttgatggttttgtcacaaaaatgTTTGTTATATAGCGAATGTGGCCATAGGCACGTGCGCTCCAGCTAACAGCAGGCAGATAGTGTGGGTTTAGCCTACTACTACAGGATAAGATTATTATGGTCAAAAGAGCAAGATTATTTGTATTtatcaaacggcagccaagcatagatcatgtcaccagaataagaccctcaacaTTTATTGGAAAGTAGCAtcaaagctcatcaccgtgcactccCCGCCCTGTGAAGTttatcataacttatttcatcgcATGACTCCCAAGTTTACTTCGTTATTATATCAACATTTGCGCATAAAGCATTTCCACCGCCATTACTCGCATAATTACATTTACAAAGAAAATATGCCACGTCTAGCAtattgttttgtcgacattttaaaagtttaccgacaaatttgctgtttccatcaggcctggcATTAAATATTTTATCCAACGTACTTTACTCACATACagagttggatggaaacctggtaaCTGACACCATGATTGCATGGTGCTCTGTTACATTGTTGTACAATTTAATGACATTGAAGAATTAAATAAATTAGTAAATAAAGACAA
>XM_036987967.1
GACTGCAATGAAGACTACCTGGAACGCAACCTAAATTGCCGACGCATGTGCAGTGAATGCACTTCCTATTCCGCTCAACGCGCTGCGTTTTCTTCTTTAACCAAGCTTATTTTCAACGTAAAAAAAAGTAACCGCGTGTTGGCTCAAGACAATCCGACGTCATGAGCTTGTTTGGGACCAGCACTGGGTTTGGCGCAGGGGGATTCGGAGCGGCAACCACGGACACACACAACCCAATGAAGGATGTGGAAGTAACCTCACCCCCAGATGACAGCATCAGTTGCTTGGCGTTTAGTCCCCCTGCCATGCCAGGGAACTTCTTGATAGGGGGGTCCTGGGCCAATGATGTGAGGTGTTGGGAGGTACAGGACAATGGGCAGACAGTCCCCAAAGCCCAGCAAATGCACACAGGTCCAGTCCTTGATGTCTGTTGGAGCGAAGATGGAAGCAAGGTTTTCACTGCATCTTGTGATAAGACTGCCAAAATGTGGGATCTCAACAGCAACCAGGCAATACAGATCGCACAGCATGATGCTCCTATCAGAACAGTCCACTGGATCAAAGCCCCCAACTACAACTGCATCATGACAGGCAGCTGGGACAAAACTCTGAAGTTCTGGGACACCCGTTCGCCCAACCCAATGATGTCCCTGCAGCTGCCGGAGAGGTGCTACTGTGCAGACGTGGTGTATCCCATGGCAGTGGTAGCATCGGCAGAGCGAGGTTTGATTGTATATCAGCTTGAGAACCAGCCGTCCGAGTTCAGGAGGATAGACTCACCACTCAAACACCAGGTGACTGGTTTCACATACCAGCACCGCTGCATAGCCATCTTTAAGGACAAACAGAACAAGCCTGCTGGATTTGCTCTTGGGAGCATTGAAGGGCGGGTCGCCATTCACTACATCAACCCTCCTAACCCAGCCAAGGATAACTTCACCTTCAAGTGCCACAGGTCGAATGGAAccaacacaaccacaccacaagaCATCTATGCTGTGAATGCCATCTCCTTCCACCCTGTCCACGGTACACTGGCGACTGTTGGGTCTGACGGTCGCTTTAGCTTCTGGGATAAAGACGCTCGCACCAAGCTGAAGACCTCGGAGCAGCTGGACCAGCCAATCACAGCTTGCTCGTTCAACAACAACGGCAACATCTTTGCCTACGCCTCTAGCTATGACTGGTCAAAGGGGCATGAGTACTACAACCCTCAGAAAAAGAACTACATCTTCCTGCGTAATGCTACTGAGGAGCTGAAACCTCGGAATAAGAAATGATCTGTCCTGTCTCTCCTGCTGTTTGCAAAATGGAGGTTTGTCAAACGCACACGTGATGCCTGCACGACTCTGTTCCTATCCTGTGCCAACACCAATGGTGGAGCTGCTGCTTGCAAAAGGACCAATCACTGGAGGTCTTTCATCTTCTTGGCATTGGCCTGGATCTCTGTCCCAGCCACATGCATCCAAATAGGGGTTGGAGAGTGAGGAGATGATATTGTTTTGTAATATCtgatattttattttctattgtcagtagctaggtttccgtCGAATTGCTGACAGatttttcatgtgaatattcttaAATCTGCTGAAACTAAATCTGAAAACAATGTGTGCATTtttccaccagagatgtttccatccaATTGATTTTTTGTGGGTAGAAGGATGTGCTTGATGGCATAGTGCACATACAAATAACGTTtgtggttaaattcccatgtactaaataaaaattacaaatgaaatgggtttccatcgcattttcaactcttgatggttttgtcacaaaaatgTTTGTTATATAGCGAATGTGGCCATAGGCACGTGCGCTCCAGCTAACAGCAGGCAGATAGTGTGGGTTTAGCCTACTACTACAGGATAAGATTATTATGGTCAAAAGAGCAAGATTATTTGTATTtatcaaacggcagccaagcatagatcatgtcaccagaataagaccctcaacaTTTATTGGAAAGTAGCAtcaaagctcatcaccgtgcactccCCGCCCTGTGAAGTttatcataacttatttcatcgcATGACTCCCAAGTTTACTTCGTTATTATATCAACATTTGCGCATAAAGCATTTCCACCGCCATTACTCGCATAATTACATTTACAAAGAAAATATGCCACGTCTAGCAtattgttttgtcgacattttaaaagtttaccgacaaatttgctgtttccatcaggcctggcATTAAATATTTTATCCAACGTACTTTACTCACATACagagttggatggaaacctggtaaCTGACACCATGATTGCATGGTGCTCTGTTACATTGTTGTACAATTTAATGACATTGAAGAATTAAATAAATTAGTAAATAAAGACAA

Function

NR:

description
mRNA export factor-like isoform X1

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K14298 RAE1, GLE2; mRNA export factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987969.1 False 2442 mRNA 0.45 13 40086011 40090648
XM_036987968.1 False 1264 mRNA 0.52 12 40086102 40089385
XM_036987966.1 False 2372 mRNA 0.46 13 40086102 40090648
XM_036987967.1 True 2370 mRNA 0.46 13 40086105 40090648

Neighbor

gene id symbol gene type direction distance location
LOC110532060 if2b coding upstream 193 40075852 ~ 40085818 (+)
LOC110532057 LOC106571964 coding upstream 22156 40056808 ~ 40063855 (+)
LOC110532055 gnas coding upstream 39458 40013096 ~ 40046553 (+)
LOC110532054 NA coding upstream 123025 39961471 ~ 39962986 (+)
LOC110532052 LOC106571959 coding upstream 139926 39939765 ~ 39946085 (+)
LOC110532062 sfrs6 coding downstream 4034 40094682 ~ 40098605 (+)
LOC110532061 LOC106571980 coding downstream 8086 40098734 ~ 40109207 (+)
LOC110532064 LOC106571978 coding downstream 29833 40120481 ~ 40135587 (+)
mybl2a NA coding downstream 62054 40152702 ~ 40164146 (+)
LOC110531171 LOC106571974 coding downstream 132542 40223190 ~ 40328855 (+)
G802981 NA non-coding upstream 14298 40071506 ~ 40071713 (+)
G802978 NA non-coding upstream 17586 40067912 ~ 40068425 (+)
G802967 NA non-coding upstream 26447 40032634 ~ 40059564 (+)
G802966 NA non-coding upstream 26624 40032362 ~ 40059387 (+)
G802947 NA non-coding upstream 80862 40004923 ~ 40005149 (+)
G802996 NA non-coding downstream 24391 40115039 ~ 40115538 (+)
G802997 NA non-coding downstream 25973 40116621 ~ 40116975 (+)
G802998 NA non-coding downstream 26941 40117589 ~ 40117828 (+)
G803017 NA non-coding downstream 79634 40170282 ~ 40173004 (+)
G803026 LOC106566687 non-coding downstream 93393 40184041 ~ 40189878 (+)
G802830 LOC106571955 other upstream 273986 39810327 ~ 39812025 (+)
G802822 NA other upstream 293678 39791917 ~ 39792333 (+)
G802821 NA other upstream 295609 39789657 ~ 39790402 (+)
spryd4 LOC106571951 other upstream 445142 39639241 ~ 39640889 (+)
adcy6a LOC106566714 other upstream 612454 39465931 ~ 39513879 (+)
LOC110532068 LOC106571971 other downstream 296117 40375272 ~ 40393967 (+)
G803437 selenok other downstream 352248 40442896 ~ 40449939 (+)
G803457 NA other downstream 376980 40467628 ~ 40468002 (+)
G803728 NA other downstream 930288 41020936 ~ 41021502 (+)
LOC110532096 LOC106572259 other downstream 1344236 41423598 ~ 41452922 (+)

Expression


Co-expression Network