LOC110532062 (sfrs6)


Basic Information

Item Value
gene id LOC110532062
gene name sfrs6
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 40094682 ~ 40098605 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615669.2
CGTGTATTCTCGCGACGATGATTCTTGACGTCACGGTCTACATAAAACTACCTAACTCAGCGACTTCTCTTTTGTTAACGGCATTTTGTTATCAGTTGGAGAAGCCATCCGAGTATCAATAGTCATGCCCCGCGTCTATGTTGGAAAACTAAGTTATCATGCTCGAGAAAAAGACCTTCAGCGGTTTTTCAATGGCTACGGAAAGCTTATGGAAATTGATCTGAAAAATGGatatgGATTTGTAGAGTTTGAGGACAATCGCGATGCGGATGACGCTGTGTATGAACTGAATGGCAAGGAGTTGTGCGGGGAGCGTGTGACCGTGGAACATGCAAGAGGACCGCGGCGCGACCGAGATGGATATAGTGGTGGCGGGGGTGGTCGCAGTAGTAGTGGTTACAGCAGCAGCAGAAGCCGCACTGGCAGGGATAAGTACGGGCCACCTGTCCGTACCGAGTACCGGCTGATCGTTGAGAATCTGTCCAGCCGCTGCAGCTGGCAGGATCTGAAGGATTTCATGCGCCAGGCTGGGGAGGTCACGTACGCTGACGCCCACAAGGAGCGTACCAACGAGGGTGTCATCGAGTTCGGCTCACGTTCGGACATGAGGAGGGCCCTGGACAAGCTGGACGGCACAGACATCAACGGGAGGAAGATCCGCCTGGTGGAGGAAAAGTCTCGCCGCCGCCGCTCCTACTCTGGCAGCCGCTCCAGGTCTCGCAGCAGACGTCGCTCTCGTAGCAGGAGCAGCCGCTCCAGGAGTAACTCCAGGTCCCGATCCCATTCTCGCAGCAAGAGACGTCGCTCTAGATCTGGAAGGAAGTCCCGTTCCGGCAAGTCTCGTTCCCACTCTCGCACCCGCAAATCCAGATCCCGCTCCGACAAAAGCAAGTCCCGTTCCAAGAGCCGTTCCAAGGTGAAATCCGAGCGGGATTCCAGCAGCCCTTCCAAGGAGAAGTTGACCAGCAAGAAGTCACGTAGCCGCTCGGCGTCCCCCATGGGGAATGGGAAGGAGGAGCCGTCCTCTCGCTCCCCGTCCCCAGCAGCTGACCGCCACTCCAAGTCGCCAGACAAGCGTCCTGTCTCCCGCTCCCCATCTCGCTCCAGGTCTAGATCAGCTTCCCGAGATTAAAGGCATTGCCCAGTTTGTTTCATCCAAATGTTCCCCATTAAAGCAATCTGGATGTATAGGAGCAGCTTCTATTTGATTTAGCAGATCTATCGCAGCACCAGGTTAATCAAGGCTTGCTCAGTTAATCGGTGCTATCTTTGGCACTTAGCAATCTAAACCATGATCTTGACGTTGTATTATTCATGGCTTGAGAATAATTTAGTcattgtgtggggggggggtggcacaTCGTAGATTATAGCTGCTATGTTTTGTACATGGAGGAGCTTGTCTGAATGGCTTTGTATTTAAAACAAGTCAGGACTTATTTTATTTCCTTAATTGTTATTTGTATTCCTCCCTCCGGTCTGCTTTTGCTTACATCAGTTGTGTTTGACATTATTTTCCATGATTTGAGTAATTTCACCTAATGAGCCCAAGGTTTGTTTTTGACACCCCACAATGTATGTGCTGTACATCTTGTGGCGGTACACTTTTTTGGCATCGAGATTTAACCAGGGATCGTGGTACAGATTCCAGCCTCCCACATGAGAAGCCGGTCTGATTACGTGTAACCatgtcaattttttttattgtacATTTAATAAAAGTTATGAAAATCG

Function

NR:

description
serine/arginine-rich splicing factor 6-like

GO: NA

KEGG:

id description
K12893 SRSF4_5_6, SFRS4_5_6; serine/arginine-rich splicing factor 4/5/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615669.2 True 1734 mRNA 0.50 6 40094682 40098605

Neighbor

gene id symbol gene type direction distance location
LOC110532058 LOC105026338 coding upstream 4034 40086011 ~ 40090648 (+)
LOC110532060 if2b coding upstream 8864 40075852 ~ 40085818 (+)
LOC110532057 LOC106571964 coding upstream 30827 40056808 ~ 40063855 (+)
LOC110532055 gnas coding upstream 48129 40013096 ~ 40046553 (+)
LOC110532054 NA coding upstream 131696 39961471 ~ 39962986 (+)
LOC110532061 LOC106571980 coding downstream 129 40098734 ~ 40109207 (+)
LOC110532064 LOC106571978 coding downstream 21876 40120481 ~ 40135587 (+)
mybl2a NA coding downstream 54097 40152702 ~ 40164146 (+)
LOC110531171 LOC106571974 coding downstream 124585 40223190 ~ 40328855 (+)
LOC110532067 LOC106571972 coding downstream 260180 40358785 ~ 40371338 (+)
G802981 NA non-coding upstream 22969 40071506 ~ 40071713 (+)
G802978 NA non-coding upstream 26257 40067912 ~ 40068425 (+)
G802967 NA non-coding upstream 35118 40032634 ~ 40059564 (+)
G802966 NA non-coding upstream 35295 40032362 ~ 40059387 (+)
G802947 NA non-coding upstream 89533 40004923 ~ 40005149 (+)
G802996 NA non-coding downstream 16434 40115039 ~ 40115538 (+)
G802997 NA non-coding downstream 18016 40116621 ~ 40116975 (+)
G802998 NA non-coding downstream 18984 40117589 ~ 40117828 (+)
G803017 NA non-coding downstream 71677 40170282 ~ 40173004 (+)
G803026 LOC106566687 non-coding downstream 85436 40184041 ~ 40189878 (+)
G802830 LOC106571955 other upstream 282657 39810327 ~ 39812025 (+)
G802822 NA other upstream 302349 39791917 ~ 39792333 (+)
G802821 NA other upstream 304280 39789657 ~ 39790402 (+)
spryd4 LOC106571951 other upstream 453813 39639241 ~ 39640889 (+)
adcy6a LOC106566714 other upstream 621125 39465931 ~ 39513879 (+)
LOC110532068 LOC106571971 other downstream 288160 40375272 ~ 40393967 (+)
G803437 selenok other downstream 344291 40442896 ~ 40449939 (+)
G803457 NA other downstream 369023 40467628 ~ 40468002 (+)
G803728 NA other downstream 922331 41020936 ~ 41021502 (+)
LOC110532096 LOC106572259 other downstream 1336279 41423598 ~ 41452922 (+)

Expression


Co-expression Network