selenok (selenok)


Basic Information

Item Value
gene id selenok
gene name selenok
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 40395732 ~ 40450018 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987985.1
TACGATAGACCGCAGCTAAATATGGTCAGGTCCTGGACAACAGAAGCCAGTCTCCATGGCGAATGTCGTTCCTCACTGATCTCTTCTGGGGTGCTGTGGAGTTCATTGGCTTGTTtttccaATCCCTGGTCCAGCCAGATCTGACAAAGAGGGGTAACTCTGGCTCGTCCTCTGCAGGCTACAGTGATGGCAGAGGCCCCCCTGGACCCCCTGGTGGCCGGAGGCGGATGGGGAGGATAAACCACGGTGGGGGGCCCAGCGCCCCTCCCATggggggaggaggatgaggaagGTAAACGCCTACACATTTTTGTGTAGGCGTGGGTTGTGGCACACCGGCTGCAGACATGTAGCCTAATTTAGGCTGCAATGACGTGCATGTGTGCCAGCCCCCCATCCTCTACAGCTGCCTCTGCTCACCACAGACTCCTGACGCTCCTCTGGGAATTCCTACACGTAGGGTCCAGGGCGGCCGATACGGCAGCTTCCTTTTTCTGACCCCTCCTCTTCTTGTCCCCTTGTGAATCATATCACATCCCTCTCCGAAGCTGTAATATTTTTTGTATCCCACTGTTAAATAAAGTCCTGTGCTGTA
>XM_036987984.1
AGTAATTCGTCTCTGCGAGCTCACTATGTCTGCAACTTTCGCTAGAAAGGCGAAATGATGCTAAGTAGCTAACATTAACAACGACAACAAACAGCTACGATAGACCGCAGCTAAATATGGCAGGTCAGGTCCTGGACAACAGAAGCCAGTCTCCATGGCGAATGTCGTTCCTCACTGATCTCTTCTGGGGTGCTGTGGAGTTCATTGGCTTGTTtttccaATCCCTGGTCCAGCCAGATCTGACAAAGAGGGGTAACTCTGGCTCGTCCTCTGCAGGCTACAGTGATGGCAGAGGCCCCCCTGGACCCCCTGGTGGCCGGAGGCGGATGGGGAGGATAAACCACGGTGGGGGGCCCAGCGCCCCTCCCATggggggaggaggatgaggaagGTAAACGCCTACACATTTTTGTGTAGGCGTGGGTTGTGGCACACCGGCTGCAGACATGTAGCCTAATTTAGGCTGCAATGACGTGCATGTGTGCCAGCCCCCCATCCTCTACAGCTGCCTCTGCTCACCACAGACTCCTGACGCTCCTCTGGGAATTCCTACACGTAGGGTCCAGGGCGGCCGATACGGCAGCTTCCTTTTTCTGACCCCTCCTCTTCTTGTCCCCTTGTGAATCATATCACATCCCTCTCCGAAGCTGTAATATTTTTTGTATCCCACTGTTAAATAAAGTCCTGTGCTGTA
>XM_021615679.2
ACCCTAAAAAGTGGAAGGAGAATAGGTGGGCGGGGCCTGGGGAGGGTTCATTTGACGTAGTGACGTAACACCGGATGCGGAAATTTAGCAGCGAACAACAGTAGTTGGGAGCTGCAAAAATGGTGTACGTGGCGAATGGTCAGGTCCTGGACAACAGAAGCCAGTCTCCATGGCGAATGTCGTTCCTCACTGATCTCTTCTGGGGTGCTGTGGAGTTCATTGGCTTGTTtttccaATCCCTGGTCCAGCCAGATCTGACAAAGAGGGGTAACTCTGGCTCGTCCTCTGCAGGCTACAGTGATGGCAGAGGCCCCCCTGGACCCCCTGGTGGCCGGAGGCGGATGGGGAGGATAAACCACGGTGGGGGGCCCAGCGCCCCTCCCATggggggaggaggatgaggaagGTAAACGCCTACACATTTTTGTGTAGGCGTGGGTTGTGGCACACCGGCTGCAGACATGTAGCCTAATTTAGGCTGCAATGACGTGCATGTGTGCCAGCCCCCCATCCTCTACAGCTGCCTCTGCTCACCACAGACTCCTGACGCTCCTCTGGGAATTCCTACACGTAGGGTCCAGGGCGGCCGATACGGCAGCTTCCTTTTTCTGACCCCTCCTCTTCTTGTCCCCTTGTGAATCATATCACATCCCTCTCCGAAGCTGTAATATTTTTTGTATCCCACTGTTAAATAAAGTCCTGTGCTGTA
>XM_021615680.2
TACCCTAAAAAGTGGAAGGAGAATAGGTGGGCGGGGCCTGGGGAGGGTTCATTTGACGTAGTGACGTAACACCGGATGCGGAAATTTAGCAGCGAACAACAGTAGTTGGGAGCTGCAAAAATGGTGTACGTGGCGAATGGTCAGGTCCTGGACAACAGAAGCCAGTCTCCATGGCGAATGTCGTTCCTCACTGATCTCTTCTGGGGTGCTGTGGAGTTCATTGGCTTGTTtttccaATCCCTGGTCCAGCCAGATCTGACAAAGAGGGGTAACTCTGGCTCGTCCTCTGCAGGCTACAGTGATGGCAGAGGCCCCCCTGGACCCCCTGGTGGCCGGAGGCGGATGGGGAGGATAAACCACGGTGGGGGGCCCAGCGCCCCTCCCATggggggaggaggatga
>TU914916
CGGAAATTTAGCAGCGAACAACAGTAGTTGGGAGCTGCAAAAATGGTGTACGTGGCGAATGGTCAGGTCCTGGACAACAGAAGCCAGTCTCCATGGCGAATGTCGTTCCTCACTGATCTCTTCTGGGGTGCTGTGGAGTTCATTGGCTTGTTtttccaATCCCTGGTCCAGCCAGATCTGACAAAGAGGGGTAACTCTGGCTCGTCCTCTGCAGGCTACAGTGATGGCAGAGGCCCCCCTGGACCCCCTGGTGGCCGGAGGCGGATGGGGAGGATAAACCACGGTGGGGGGCCCAGCGCCCCTCCCATggggggaggaggatgaggaagGTAAACGCCTACACATTTTTGTGTAGGCGTGGGTTGTGGCACACCGGCTGCAGACATGTAGCCTAATTTAGGCTGCAATGACGTGCATGTGTGCCAGCCCCCCATCCTCTACAGCTGCCTCTGCTCACCACAGACTCCTGACGCTCCTCTGGGAATTCCTACACGTAGGGTCCAGGGCGGCCGATACGGCAGCTTCCTTTTTCTGACCCCTCCTCTTCTTGTCCCCTTGTGAATCATATCACATCCCTCTCCGAAGCTGTAATATTTTTTGTATCCCACTGTTAAATAAAGTCCTGTGCTGTACACCTGtcctttttttaaagaatAAAAGCAAAATTAGTACTATATTCACATCTCTCCCAAATCAACCTTTGTGAATGGCCTTGTTAATCATTGAGCAATAGTGGACCTAATTGATTACAAAATGTTAAATAGACCTCAGGAGGAATACTGGCCCATTCATGTGATTTGCCTTTATTTATGCTACCCATTGTCCTTTTGAGTTCATTGAGACAGATTTGGGCTCCCAGCGAGGTGGCTTATGTTGAGAGAATAGGAGTTTCTTCATTATTTTAGACCGGCTTGGTGTGGATTTCCCATCAGAGGAGTACAATTCTTTATAGAAGCATGAGAATCTTTGATTCATTTGGGTTCGGATAGTAATTCCCCTGTTTCAGACTCAATAGTTGCTATATCAGCTAATGATCATTGCTGCATAGCTTGTTGGCCAGTAAACGACTAGGACAATTACCATGGAATGTTGAGTCTAACTCTGTCTTATCAATAAATTAAGTTCTGCCTTGACCTTGGACAGACTAACAGCTACCTAGTCTGAAAAGAGTGTTTGTtgatgtgacgaccctcccactctgtctgctatattctctctttgttcttgtttccttattaggatgc
>TU914915
CGGAAATTTAGCAGCGAACAACAGTAGTTGGGAGCTGCAAAAATGGTGTACGTGGCGAATGGTCAGGTCCTGGACAACAGAAGCCAGTCTCCATGGCGAATGTCGTTCCTCACTGATCTCTTCTGGGGTGCTGTGGAGTTCATTGGCTTGTTtttccaATCCCTGGTCCAGCCAGATCTGACAAAGAGGGGTAACTCTGGCTCGTCCTCTGCAGGCTACAGTGATGGCAGAGGCCCCCCTGGACCCCCTGGTGGCCGGAGGCGGATGGGGAGGATAAACCACGGTGGGGGGCCCAGCGCCCCTCCCATggggggaggaggatgaggaagGTAAACGCCTACACATTTTTGTGTAGGCGTGGGTTGTGGCACACCGGCTGCAGACATGTAGCCTAATTTAGGCTGCAATGACGTGCATGTGTGCCAGCCCCCCATCCTCTACAGCTGCCTCTGCTCACCACAGACTCCTGACGCTCCTCTGGGAATTCCTACACGTAGGGTCCAGGGCGGCCGATACGGCAGCTTCCTTTTTCTGACCCCTCCTCTTCTTGTCCCCTTGTGAATCATATCACATCCCTCTCCGAAGCTGTAATATTTTTTGTATCCCACTGTTAAATAAAGTCCTGTGCTGTACACCTGtcctttttttaaagaatgttcAGAGCAATGATATGTTGAAATGTAATTTA

Function

symbol description
selenok Predicted to be involved in calcium ion transport; endoplasmic reticulum calcium ion homeostasis; and protein palmitoylation. Predicted to act upstream of or within ion transport. Predicted to be located in endoplasmic reticulum. Predicted to be active in Golgi apparatus and endoplasmic reticulum membrane. Orthologous to human SELENOK (selenoprotein K).

NR:

description
selenoprotein K

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987985.1 False 595 mRNA 0.55 5 40442893 40449708
XM_036987984.1 False 694 mRNA 0.54 5 40442893 40449803
XM_021615679.2 False 709 mRNA 0.55 5 40442893 40450017
XM_021615680.2 False 402 mRNA 0.57 4 40446805 40450018
TU914916 False 1244 TUCP 0.47 6 40395732 40449940
TU914915 True 688 TUCP 0.53 5 40442837 40449940

Neighbor

gene id symbol gene type direction distance location
LOC110531173 LOC106571982 coding downstream 8231 40423592 ~ 40434662 (-)
LOC110531172 NA coding downstream 35309 40400884 ~ 40407584 (-)
chdh chdh coding downstream 103322 40329381 ~ 40339571 (-)
LOC110532066 LOC106571976 coding downstream 223501 40207024 ~ 40219392 (-)
LOC110531170 LOC106571977 coding downstream 238701 40183970 ~ 40204192 (-)
LOC110531175 sema3g coding upstream 143495 40592586 ~ 40659439 (-)
zgc:136971 LOC106572275 coding upstream 281103 40731121 ~ 40743693 (-)
LOC110532074 LOC106572274 coding upstream 295605 40745623 ~ 40759016 (-)
LOC118965936 NA coding upstream 310534 40760552 ~ 40762438 (-)
prkar2aa LOC106572271 coding upstream 324147 40774165 ~ 40817548 (-)
G804053 NA non-coding downstream 55120 40387302 ~ 40387773 (-)
G804049 NA non-coding downstream 61260 40380635 ~ 40381633 (-)
G804041 NA non-coding downstream 70819 40371874 ~ 40372074 (-)
G804040 NA non-coding downstream 71636 40369829 ~ 40371257 (-)
G804037 NA non-coding downstream 83806 40351121 ~ 40359087 (-)
G804091 NA non-coding upstream 5421 40455439 ~ 40455688 (-)
G804100 NA non-coding upstream 17622 40467640 ~ 40467882 (-)
G804114 NA non-coding upstream 40619 40490637 ~ 40491190 (-)
G804138 NA non-coding upstream 100483 40550501 ~ 40574256 (-)
G804154 NA non-coding upstream 134404 40584422 ~ 40584636 (-)
LOC110531168 LOC106571968 other downstream 474919 39961467 ~ 39996984 (-)
G803170 LOC106571959 other downstream 493753 39944080 ~ 39949140 (-)
G802609 NA other downstream 1028567 39411342 ~ 39414326 (-)
G802602 LOC106571943 other downstream 1059683 39380750 ~ 39383210 (-)
G802149 LOC106581475 other downstream 1368173 39074481 ~ 39074720 (-)
G804137 LOC106572278 other upstream 120996 40571014 ~ 40573950 (-)
G804307 NA other upstream 412571 40862589 ~ 40912358 (-)
wdr6 wdr6 other upstream 455354 40904738 ~ 40916073 (-)
G804255 NA other upstream 534464 40984482 ~ 40985245 (-)
G804543 LOC106572259 other upstream 987012 41437030 ~ 41437971 (-)
LOC118966046 NA coding downstream 243040 40135452 ~ 40152692 (-)
LOC110532056 LOC106571963 coding downstream 340181 40051016 ~ 40055551 (-)

Expression


Co-expression Network