LOC118966048 (LOC106572305)


Basic Information

Item Value
gene id LOC118966048
gene name LOC106572305
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 40898024 ~ 40904180 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987998.1
GGAGGGAGTCGGTGCTGAAGGGTGAAGTAACTTCGCTGTGAGCTCAGTTGAACGGAAGGCGTTGTCTGCCGAAAGATTAAAGACGAGAAAggaagagtttgtgtgtgtgtgtgtagcggtgtGAGGGATGCCTCGGCGTAGCCGGGCCCGTGACAACGGGGCTGAGGTGAGCAAGCGAACCCCCCGAGGAAGGAGAAAAGACCCCCAAGTTGAGGAGCCTTCCACACCCACCAGAGAGGCCACAGGATCTATGATGCCACAGGATCGGTTGCCTATGATTGGCTCCTCTGGGAGTAAGCCAGCAGCCAAGCCGACTATGACAACCCACCAGCGCCCCTCTCAGGCCGCACGGAGGAAGCGCACCCAGACGGGCCAGACCTCCGCCAACCTTCCCCAGGACAGCATGACCCCGTGGGGCGGACTGTCCCTATCCGAATCCTCCTTCACCAGCATCCCTCCGCCGCCGCCcgcccctctccccacaccccTGCCCCCCCAACTCCCCCGTCACCTGTCGGGGGGTGTCGGTGTCCGGAGCCCTGCCCCCTCACCCCCAGTCACAGCGCCCACAGAGGGGAGCAGGGCTGTGAGGGTGAGGCGCAGGGTGCCCCCCCAGCACAGGCTCCCCCGTGCCCCCCGCTTGCCCCCACTCAGACCCGTCACCAACCTCAGCTTCTCTCGCAGCTTCACCTTCTCCTTCTTTGAGCTGCCGCTGCACCAGTCCCCCCACAGCCGCGCTGAACGCGTCCGAGACCTCATGCTGCTGCTGAGACAGATCCAGTACTAACTGACCGCACTACACCGTGACCCAGAGCAGCGACTCAGTACTGACCACAGCATGGCTATTAACTAGGACAATACTTGACCACTCACCGGGACAATGGTCCAGCTCTGGTTGCATCACAATTCCATCAAGTCCAAGCACTTGCACCGGTGGTCAGGCACGGTCCTTCTGAAAATGCGGCACTACTGTCCAGTACTGACCGACTTGATGGCACACCAAGGACCACAACAGGACCATGGTTATGTGCAGATATTCTGAACCCTTTCTGATTAACTCAGTCTAGGGATACTGCTTTTAAAGCACATTTATTCTCAGCGTTTGTATGTTAGTGTGCCCAGTGATTGGAGTActaaacatttgtgtgtgtgtgtgtgtgtgtgacgtgttaAGAATTTGTTTGTTCTTATTGGCTGTCTGGATCTGGGGGTGAGGCTTTGAGACAGTGTAGCACGGGTTAAATGAGGTCATTTATCAGATTAAAACGtatcaacaaaaaaataacagatttaaaaaaaaacataccgAGTTAAAACTCTGAATAATTGGATGGTAGAGTTTTATGTAGCCTGATATGCTAATCAAAGTCTGTCTAAGTTCATGTTTGTTGCAGTAGTTATAATGTGGCAAATGGTCCCATTGCCAGTTGGTAATCATTCTCTCCCAAGACATGGTAATTTAAacatctgtatttctctctcaaaATCATAAGATTTATAGCATTTCGTTTAGTCGTCTTTACACTTTATATGATATGAAGAAAGTTCATGTTTGATCTAATGTGTCAATGTTTATAATGTAAGGCTGGCAAGAATTCTCTCCTGAGACTTTTGGGTAGAGCATTTTTCAACGTCTCCATTTGTGTCAGAATTATTTGGGCGAATTTGTTTCTAGTCATTATGTCACTTTATATTCTACAATGTGATGTGGCAAATGGCTATAATGCACGGCTCGTTTGAGAGCCTAAGATGCTTTATGCATATCAGTACAGCAGAAGAATCAACCCACACCTACAAAATCATCAAAAGTGGGGCACACTCATACTCACACACCTCTAAGCTACTCCACagac

Function

NR:

description
PREDICTED: wiskott-Aldrich syndrome protein homolog 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987998.1 True 1853 mRNA 0.51 3 40898024 40904180

Neighbor

gene id symbol gene type direction distance location
LOC110532079 LOC106572269 coding downstream 440 40886478 ~ 40897584 (-)
LOC110532083 NA coding downstream 19079 40877041 ~ 40878945 (-)
mgll mgll coding downstream 31185 40844067 ~ 40866839 (-)
prkar2aa LOC106572271 coding downstream 80476 40774165 ~ 40817548 (-)
LOC118965936 NA coding downstream 135586 40760552 ~ 40762438 (-)
wdr6 wdr6 coding upstream 558 40904738 ~ 40916073 (-)
LOC110531177 celsr3 coding upstream 14546 40918726 ~ 40972151 (-)
dalrd3 dalrd3 coding upstream 81289 40985469 ~ 41000703 (-)
impdh2 LOC106566785 coding upstream 109199 41013379 ~ 41024793 (-)
arih2 arih2 coding upstream 122070 41026250 ~ 41034402 (-)
G804273 NA non-coding downstream 110126 40787523 ~ 40787898 (-)
G804206 NA non-coding downstream 129440 40767109 ~ 40768584 (-)
G804245 NA non-coding downstream 131318 40766345 ~ 40766706 (-)
G804240 NA non-coding downstream 132646 40764617 ~ 40765378 (-)
G804239 NA non-coding downstream 137828 40759647 ~ 40760196 (-)
G804262 LOC106572270 non-coding upstream 13727 40917907 ~ 40918478 (-)
G804247 NA non-coding upstream 79224 40983404 ~ 40984266 (-)
G804259 NA non-coding upstream 104709 41008889 ~ 41009137 (-)
G804269 NA non-coding upstream 105871 41010051 ~ 41010825 (-)
G804137 LOC106572278 other downstream 324074 40571014 ~ 40573950 (-)
selenok selenok other downstream 448084 40395732 ~ 40450018 (-)
LOC110531168 LOC106571968 other downstream 930050 39961467 ~ 39996984 (-)
G803170 LOC106571959 other downstream 948884 39944080 ~ 39949140 (-)
G802609 NA other downstream 1483698 39411342 ~ 39414326 (-)
G804255 NA other upstream 80302 40984482 ~ 40985245 (-)
G804543 LOC106572259 other upstream 532850 41437030 ~ 41437971 (-)
LOC110532119 LOC106572245 other upstream 1223672 42125255 ~ 42141613 (-)
G806724 LOC106572208 other upstream 2427750 43331930 ~ 43339589 (-)

Expression


Co-expression Network