arih2 (arih2)


Basic Information

Item Value
gene id arih2
gene name arih2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 41026250 ~ 41034402 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615694.2
GTGTCATCGATGGAGACACGGAAGTGACGCAATTTTTGAATATTAATTTACTTTCTGTCTTCCACTTAGCTGGCGAGTTTTTCAGAATTGGTCCTGGTACTTAAATCCACTTTTGTCTTCATTTGCAAGGCGACCCAACTCGGCCTGGAAGAGCATCCATCTCGGCAGTTCCTCATGAAAGACGGGGAGTGTaacttcttctgcttcttccgCTGCTGCTGAGCGGTGTTGGGCTAGTTTGTGGAGCCTTTTTCTCTGGGCTCTGTAGTTCCCCAGGTGGTTCTGACGGCCAGAGAGCCAGTCCCAGGGAGTGAGGGCGTCTCTGCCGGCGAATGTCTGTGGACATGAACATCAATGAGGATGACCTCGGGGTCAACTCTGAGGATGATGACGGGGGGGACGACGACGACCAGGGGGACATAGCCGACTACTATGAAGGCGTGGCCGGCGACATGGAGCAGCAGGGGTCTGACTCGTTCGACCCAGAGGAGTACGAGTTCACCTGCCTCGACTACAGGGAGAGTCAGAAGGTGCTCTGCGACGAGGTCAACAGTATCGCCGCCATCCTGAAGGTTTTACCTGCTGTAGCTAAACTGGTCCTTGTGCACTTTCACTGGCAAGTGTCACAAATACTGGACAGATACAAGTCAAGTTCATCTCAGTTGCTGTCTGACGCCCAGGTCCAGCCCAGCAGCACCTGCAGATCAGTTCCTACGCCTCAGTCCCTCCAGTGTGGGGTGTGTCTGCAGCTGGTTCGGAGGGACACCCTGCTCGCGCTGCCCTGTCAGCACTCCTTCTGCAAAGGATGCTGGGAGCAGCATTGCACTGTACTTGTCAAAGATGGGATGGGAGTGGGCATCTCCTGTATGGCTCAGGACTGTTCCCTCCAAATGCCAGAAGACTTTGTGCTCTCGCTGCTGTCTGGTGAGGAGCTGAAGGACAAATATAGACGCTACCTCTTCAGGGACTATGTGGAGAGCCACTTCCAGTTGCAGCTGTGTCCAGGGGCAGACTGCCCCATCGTCATCCAAGTGCAGGAGCCACGGGCCCGCAGAGTACAGTGCATCCACTGCAATGAGGTCTTCTGTTTCAAATGCAGGGCCATGTACCACGCCCCCACAGACTGCCCGACTGTTCGAAGGTGGCTGACCAAATGTGCAGACGATTCCGAAACGGCCAACTACATCAGTGCGCACACTAAAGATTGTCCCAAGTGCAATATCTGCATTGAGAAGAATGGAGGCTGCAATCACATGCAATGCTCCAAGTGCAAACACGACTTCTGCTGGATGTGTCTGGGGGACTGGAAGACCCATGGCAGTGAGTACTATGAGTGCAGTCGCTATAAGGAGAACCCAGACATCGTCAACCAGAGCCAGCAGGCACAGGCCAGAGAGGCCCTCAAGAAATACCTTTTCTACTTTGAGAGGTGGGAGAACCACAATAAGAGTCTCCAGCTGGAGGCTCAGACGTACCAGCGGATCCAGGAGAAGATCCAAGAGCGGGTGATGAACAACCTGGGTACCTGGATAGACTGGCAGTACATGCAGAACGCTGCTAAGCTCCTGGCCAAGTGTCGCTACACTCTGCAGTATACTTACCCCTACGCCTACTACATGGAGTCTGGTCCACGTAAAAAACTGTTTGAATACCAGCAAGCCCAGCTGGAAGCGGAGATTGAGAACCTGTCCTGGAAGGTGGAGCGAGCAGACAGCTACGAGAGTGGGAGCGAGGGGGAGCTGAGTGCTAATGACAGAGGGGATCTGGAGAATCAGATGCACATCGCTGAGCAGAGGAGACGCACGCTGCTGAAGGATTTCCATGACACCTGAAGTCTCCAGACTACTGCGAAGCACCAGCAGCTCCCTGACTCCTTCGCTTCCTTCACTTTCCATCCCTTTGTCTACGGCTCCGCACACTCATCCCTCCCTTGTTAAGCGCTCTTTGTGTCTGCTACAGGGTCCCAGAATGGTGTGGCTGTATCCCTCCCATTTAGATGTCAAGAACGCCACCTTCAAACACACTAAACATGAAATGAGAGggcatgtgcgcacacacaccgTGAACACAAACATGCTTTAACACTCCGCCAAAAAAAAGAAACCTTCTTAATTCTCCCACACCATCCCTCTACCTGTTATTTTTTTCTCACATTGTTCACCTTTTTCTGTAAATTGATAGttcgtaaaaaaacaaacaaaaaaacattaaagAAATGCTGTAATTTTCAA

Function

symbol description
arih2 Predicted to enable ubiquitin conjugating enzyme binding activity and ubiquitin protein ligase activity. Predicted to be involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process; protein polyubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within protein ubiquitination. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human ARIH2 (ariadne RBR E3 ubiquitin protein ligase 2).

NR:

description
E3 ubiquitin-protein ligase ARIH2-like

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11969 ARIH2; ariadne-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615694.2 True 2231 mRNA 0.52 15 41026250 41034402

Neighbor

gene id symbol gene type direction distance location
impdh2 LOC106566785 coding downstream 1457 41013379 ~ 41024793 (-)
dalrd3 dalrd3 coding downstream 25547 40985469 ~ 41000703 (-)
LOC110531177 celsr3 coding downstream 54099 40918726 ~ 40972151 (-)
wdr6 wdr6 coding downstream 110177 40904738 ~ 40916073 (-)
LOC118966048 LOC106572305 coding downstream 122070 40898024 ~ 40904180 (-)
xpc xpc coding upstream 6897 41041299 ~ 41053107 (-)
borcs6 LOC106572262 coding upstream 54616 41089018 ~ 41095989 (-)
sema3h LOC106572304 coding upstream 64338 41098740 ~ 41127371 (-)
rhoab LOC106572261 coding upstream 107365 41141767 ~ 41147730 (-)
tmem115 LOC106572260 coding upstream 123677 41158079 ~ 41164529 (-)
G804269 NA non-coding downstream 15425 41010051 ~ 41010825 (-)
G804259 NA non-coding downstream 17113 41008889 ~ 41009137 (-)
G804247 NA non-coding downstream 41984 40983404 ~ 40984266 (-)
G804262 LOC106572270 non-coding downstream 107772 40917907 ~ 40918478 (-)
G804353 NA non-coding upstream 1170 41035572 ~ 41035777 (-)
G804354 NA non-coding upstream 1418 41035820 ~ 41036083 (-)
G804355 NA non-coding upstream 2662 41037064 ~ 41037539 (-)
G804407 NA non-coding upstream 98122 41132524 ~ 41132750 (-)
G804423 NA non-coding upstream 144442 41178844 ~ 41179405 (-)
G804255 NA other downstream 41005 40984482 ~ 40985245 (-)
G804307 NA other downstream 113892 40862589 ~ 40912358 (-)
G804137 LOC106572278 other downstream 452300 40571014 ~ 40573950 (-)
selenok selenok other downstream 576310 40395732 ~ 40450018 (-)
G804543 LOC106572259 other upstream 402628 41437030 ~ 41437971 (-)
LOC110532119 LOC106572245 other upstream 1093450 42125255 ~ 42141613 (-)
G806724 LOC106572208 other upstream 2297528 43331930 ~ 43339589 (-)
prdm16 prdm16 other upstream 2906164 43781726 ~ 44015554 (-)
tafa5l LOC106572193 other upstream 3214396 44247091 ~ 44292397 (-)

Expression


Co-expression Network