xpc (xpc)


Basic Information

Item Value
gene id xpc
gene name xpc
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 41041299 ~ 41053107 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988003.1
CGGAAGTGGATGCGGATGTGACGTTTTCGGACACCACTTCATAACAATCTATCACCGCAGGATGTATTATGAAAGGCTCCGTAAAGTTGTGTTGAATAACCACGGTTTCTCCGCCAAATTACACAACACCACGTGTGCATGGTAAACTCAGCCATTCACGATTCTGTCTGCAACACTATTTAAACAAAAGTACACGATTACATTTGGAACGAAGCGAGCATGGCCAAGCGTAAAGAGTCTGCAGACACAGCAGTGAAGACCGACACAAAGAAGCCGAAGAAGGTCGCAAAAGGCAAAGCTGGAGGACCAAGAGCCAAAAAAGagaatagagaggaaacgGAGAAGGTTCAGAGAAAAGCCAAGCACAAATCCCGTCTCTCTAAACCTATAGTAGGGGACACAGCCGAAACCAACACCAGCAAATACTTCCAGAACGAGACTCCAGTGAAGGAGGAGCCTGCTGATATGAGTCCTGAGACTGATCTCATCCCTCCTTTTATCAGAGCCAGAAAAGACACAGTAAAGcctgtgaaagaagaagaggacagCGAGGAGGATGAAGACTGGGAGGAAGTGGAAGAGCTGTCTGAGCCCTTAGGTCCAGTAGAGCCAGCCCTGCCCTCACAGCCCGTGGAGATAGAGATTGAGACCCCAGACATCATCCACAAGAGGCAGAAAAGggagaagaggaaggcggAGTTTGAGACCTATTTGCGACGCATGATGAACCGCTTCAACAAAGATGTGGTGGAGGACACACACaagGTCCACCTCATGTGTCTTCTAGCCAATGGGATGTTCCGGAACCGGTTGTGTAGCACACCGGACCTGCTGGCCATCAGCCTGTCTCTGCTGCCCACCCACTTTACCATGGTGGCCAAGGAACGCATCGACACCAACTACCTCTCTGGCCTGCTCAAGTGGTTTGGGGCGACGTTCACGCTTAACCCGGAGCTTCCCTGTGAGGAGAGGCCCGACCCACAGGCCCTGCTGGAGAGGAGGCTGGGCAGCCTCACCGCTAGAGACCACCAGGAAATGACACATCTGTTCCTATTGGTGCTGAGGTCGTTGCAGCTCTTCTGTCGACTGGTGCTCTCTCTGCAGCCCCTGTCACTGAAGCCCCCGTCAGCCAAGAGCAAGGCCAAGAACTCAGGCAGCCCGCCTAGGAAGAGTCCATCGCAGAAGAAACCTCCAAAAGAGAGCCCCTCAGAGCCCAAGGTATCCCCAGGGTCCAAGAGACCGGCGGGGGGGAAGGccgagagaggagggaagaaggcAAAAAAGAAAGAGGCAGGGGAGACGGAAAAGGCTGTGTCGGTGGGACAGAAACCCAAGAACTCCAAGCGCCGCAGCATAGCCTCGAAGGTGAGCTACAAAGAGGAGAGCAGTGAAGGGGAGGGGCCAAGTGATGGGGAGGAGTTCCAGCTGACCAATGAGGAAGACAGTGAGGACTCTGAGGGAGGAGCCAAAGCAATCCGAGCCAAGAAAGTAAAAGGAGGTAAGAGCAGGAGTACAGCTCCACAGAAAATAAGTAGTGGAGGCAAGAAGAAAGTGAagagtgaagaggaggatgacgaTTGGGAGGGAAacgaagaggagggggaggaagagcagGGCATGAAGCGGGgcaagaggaaggagaggaagggtgcAGACGAGtggttggaggtgtacctggagAAGACTGGGTGCTGGGTCTGTGTGGAAGTGCTGCAGGGCGTGGGGCAGCCTCAACTGTGCTCCAAGCAGGCCACCCATCCCATGACCTACGTGGTAGCCGTGGACGGGGACGGTCACCTGAAGGATCTGGGCAGCAAGTACGACCCCACCTGGATGACCTCCACCAGAAAGCGCCGGGTGGACGAGGAGTGGTGGGAGGTGACGCTGGAGCCATTCCTTGGACCTGAATCTGAGAGGGATGTCCAGGAGGATAAAGAGCTCCAGGCGAAGTTGCTGGACAAGCCGTTGCCCACGTCGATAGCAGAGTTCAAAAACCACCCGCTGTACGCCCTGAAGAGACATCTACTGAAATATGAAGCGCTCTACCCCTCCACGGCGGCCATCCTCGGGTACTGCAGGGGAGAGCCTGTCTATTCCAGGGACTGTATTCACACGCTACACTCCCGAGACACCTGGCTGAAGGAGGCGCGCACTGTCCGTCTAGGAGAGGAGCCCTGCAAGaTGGTGAGAGGGTTTTCCAATCGCTCTCGGAAAGTCAGGATGGCATCAGAGCAGAAGGACAAAGATGACCTGGCTCTGTTTGGTGAATGGCAGACGGAGGAGTACCAGCCCCCAGTAGCTGTGGATGGCAGGGTGCCTCGTAACGACTTCGGCAACGTTTACCTGTTCAAGCCCTGCATGCAGCCAGTTGGCTGTGTCCACCTGCGTCTGCCTAACCTCCAGAGAGTGGCTAAGAAGCTGGACATGGACTGTGCAGCTGCTGTCACTGGCTTTGACTTTCACGGTGGCTACTCTCATGCTGTAACGGACGGCTACATTGTGTGTGAGGAGCATGAGGAGATCCTGAGAGCAGCCTGGGCAGAAGACCAAGAGATACAGAGAcaaaaggagaaagagAAGCGGGAAAAGAGGGCAGTGGCTAACTGGACTCTGCTGGTGAAGAGCCTGCTGATCAGGGAGAGACTACAGCGTCGCTATGGGAAGAAAGGCCCAACACCCGCAGGAGGCCTGGACCAACTGAAGAGCCAGGATAGAGAAGGGGTAGAGGGTCTATCGTCTGACGAGGAAGGGGAAGGTGGGCCGAACACGGCTTCTGCCGCACTGGCACAGGCCTGGCCCCAGAACAGACAGGGGGAGCAGGACAGTGGCACAGGGGGAGCCTCCAAAACTACATCCAAACGGCAGAAAAGGGGCCAGGAAAAGCACCTTTTCCCCTTTGAGAAAGTATGAGATCCTCCAACCCAACTCTCTCTGGCGCCCATCCAGTCGTGTTCTTCATGTCGCCAGAACGGATCAGAAGTAGGTCAGGCATCTGTTCTTGGTTCCTGCTGTGCTACAGGAGATGTAGGTCATTGTAATCCCTGTGgaccaaaacaacaaaacagtcTGGTGTTAGTGTGGCACATGGGCAtgcctgaagtgtccccacttgcgCCAGCGAATAGCTCGCTTTTCGCGTGGCGCCCGACTGGTAAGACGCTTGAGAATTGCTGTTacgtgtgctagcaaggcagaggtcctgggttTGAGCCTCTGTGTAAACCCGACTCAGGAGGAAGTGGTCCTCTCTAAGCTAGCAGCGTGACCACCTTTACACTGGCACAGACTCTAACCTGCACTGCTGCAGTTGGTGGAACCTCGATGTAAACTGattctgtttttttcccccacactCTCATATCGCTCCTGTCTCTCTAaacacacttgtgtgtgtgtgtgtgtgtgtgagagagaacgaACGAACGTGGAAGCTCAGTTGTCTGTCTCTACTGTGTATAAGCAGACAGTTTTTTTAATCCAAAGTATTTTTCTAAGAATTGTTATAAAAATGTTTGAATTGTTGTTATAttacagcgttgatgtgatgttAAAAGAATGGAAATAAATAGCAGATATTTTGGGGACTCATTAGTTTGACCCAAATAGAAGTGTTGACTCATGCATTTGTATCATCATCAAGCTGCCCAAACTACACTCAGACATTCACAGCAAGCTCAATTTCATCATCACAATGTCTCATAGCAACGGTATGTTTTATCCTTGAGGCAATGGAGCCAATCACTGATTGTCAGAGACAAGGAGGGAGTTATTTTACGCTGGCTTGTGTTGAACCGGGCAATGGCCCATCATTTCATTGGGCGAATGCGGGGAGGGAGGAGAGCTCTTCTCAAATCGCACGGTAATCTGCACCGCTTGGTCATGTTGTCAGGTCGGTGCATTGTCTAGAAACAGCTCTTTTTCCATCAAATAAATGTAATGTCAAACTCGT

Function

symbol description
xpc Predicted to enable damaged DNA binding activity and single-stranded DNA binding activity. Predicted to be involved in mismatch repair and nucleotide-excision repair. Predicted to act upstream of or within DNA repair. Predicted to be located in nucleus. Predicted to be part of XPC complex and nucleotide-excision repair factor 2 complex. Predicted to be active in cytoplasm. Is expressed in liver. Human ortholog(s) of this gene implicated in pancreatic cancer; serous cystadenocarcinoma; xeroderma pigmentosum; and xeroderma pigmentosum group C. Orthologous to human XPC (XPC complex subunit, DNA damage recognition and repair factor).

NR:

description
DNA repair protein complementing XP-C cells

GO: NA

KEGG:

id description
K10838 XPC; xeroderma pigmentosum group C-complementing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988003.1 True 3949 mRNA 0.53 14 41041299 41053107

Neighbor

gene id symbol gene type direction distance location
arih2 arih2 coding downstream 6897 41026250 ~ 41034402 (-)
impdh2 LOC106566785 coding downstream 16506 41013379 ~ 41024793 (-)
dalrd3 dalrd3 coding downstream 40596 40985469 ~ 41000703 (-)
LOC110531177 celsr3 coding downstream 69148 40918726 ~ 40972151 (-)
wdr6 wdr6 coding downstream 125226 40904738 ~ 40916073 (-)
borcs6 LOC106572262 coding upstream 35911 41089018 ~ 41095989 (-)
sema3h LOC106572304 coding upstream 45633 41098740 ~ 41127371 (-)
rhoab LOC106572261 coding upstream 88660 41141767 ~ 41147730 (-)
tmem115 LOC106572260 coding upstream 104972 41158079 ~ 41164529 (-)
LOC110532095 LOC106572303 coding upstream 114121 41167228 ~ 41237253 (-)
G804355 NA non-coding downstream 3760 41037064 ~ 41037539 (-)
G804354 NA non-coding downstream 5216 41035820 ~ 41036083 (-)
G804353 NA non-coding downstream 5522 41035572 ~ 41035777 (-)
G804269 NA non-coding downstream 30474 41010051 ~ 41010825 (-)
G804259 NA non-coding downstream 32162 41008889 ~ 41009137 (-)
G804407 NA non-coding upstream 79417 41132524 ~ 41132750 (-)
G804423 NA non-coding upstream 125737 41178844 ~ 41179405 (-)
G804425 NA non-coding upstream 134175 41187282 ~ 41187525 (-)
G804470 NA non-coding upstream 242842 41295949 ~ 41370370 (-)
G804548 NA non-coding upstream 392325 41445432 ~ 41445637 (-)
G804255 NA other downstream 56054 40984482 ~ 40985245 (-)
G804307 NA other downstream 128941 40862589 ~ 40912358 (-)
G804137 LOC106572278 other downstream 467349 40571014 ~ 40573950 (-)
selenok selenok other downstream 591359 40395732 ~ 40450018 (-)
G804543 LOC106572259 other upstream 383923 41437030 ~ 41437971 (-)
LOC110532119 LOC106572245 other upstream 1074745 42125255 ~ 42141613 (-)
G806724 LOC106572208 other upstream 2278823 43331930 ~ 43339589 (-)
prdm16 prdm16 other upstream 2887459 43781726 ~ 44015554 (-)
tafa5l LOC106572193 other upstream 3195691 44247091 ~ 44292397 (-)

Expression


Co-expression Network