sema3h (LOC106572304)


Basic Information

Item Value
gene id sema3h
gene name LOC106572304
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 41098740 ~ 41127371 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615700.2
AGGactgaaagagggagagggagcgagagagaaagagagcgagattaGAGTACAGTGAGAGAGAAATCAACACTCAACGGAGGGGAGAAACCCAAGAGACGAGAGTGagaagagacagagcgagagatacAGGAGACAAGTCAcatgaagagaagagaggagacacatCTCTGTAGCTGTCGAGCTGAAGCCAAGTGGGAGTAGTGTGTTTCGTTGGACTAAATCTCTTTGCTTTTCAGAGACACAAGTGAGTGTGTGTCCTGCTGGTGCCTAACTCGTGAAGTGTGTGTGCTATATGCTCGGGActttgagtgtgtgcgtgtgtgagaccATGTGGAGGTTCGCGACCTTGTTCCTTCTAGCCCACCTGGGGCGCAATCTGACAGGGGCATGGAGAGCCTCCCTGCCGCGCCTGCAGTTCACTCACTCAGagctggTCCAGAATGGCCGTCTCCTATCCCTGCCCCTGGCGGCGGGGGACATGCACTCTCTGCTGCCAGATGAAGATGGCCGTCGGCTCTACGTGGCCATGAAGGACAACCTGCTGTCCACCAGCCTGGACGACATCACACAGAACCCCAGCAAGCTCTACTGGCCAGCAAGTCCAGACCGGGTCCAAGAGTGTTTGATGGCTGGAAAGGACCGGGAGTTGGAGTGCGCTAATTTCCTGCGAGTGCTGCAGCCCTACAACCAGACCCACCTGTATGTGTGTGGAACGGGAGCCTTCAACCCTCGCTGTGCCTTCATCCCTACCACCGTCTTCCTCAAGTCGGAGCGACAAACTCTATCATTTGGACAGACTGAATGCGGGAAGGGAAAGTGTCCATACGATCCCCACCAGAGAACTGCCTCCGCCATTATTGATGGGGAGCTGTATGCTGGGATCTCATCTGACTTCATGAGTCGAGACTCGGCCTTCTTCCGCAGCCTGGGCAGTCGTCATGTGATCCGCACCGAGCAGTACGATTCCTCCTGGCTGCAGAaTGCCCAGTTTGTTAAGGTGGCCTGGATGGCGGAGACTGATAACCCAGAGGATGATAAGGTGTACGTGTTCTTCACTGAGCGCGCTCAGGAGGCAGAGGGGGCTGCTGGGAAGGTGCTGTACTCCAGAGTGGCGCGTGTTTGCAAGAATGACATCGGGGGCCAGCGGAGTCTGGTGAACAAGTGGAGCACCTTCCAGAAGGCACGTATCGTGTGCTCTATCCCTGGATCCGACGGGATACAGACTCACTTTGACCAACTACAGGACATCTTTATCCTCCATGATGGAAAGGACAAGAAGAACCCTCTGATCTACGGCCTCTTCACCACATCTAGTGACATTCTGAATGGCTCAGCGGTGTGTGTGTACCGCATGCAGGACGTGGTCCGGGCATACAAAGGAAACTTCTACCACAAGGAGGGACCACAGTACAAGTGGGCCGAGTACACAGGAAAGATCCCCTACCCAAGACCTGGCACAtgTCCCAGCAGCACATACGGTAGCTACAGCTCTACCCGGGAGTATCCCGATGACGTCATCTTCTTCAGCCGTACCCACCCTCTGCTGCAGGAGGCGGTGCTTCCGCTGGGAGGGCGCCCCTTGTTGGTCAGGGTGGGAGTGCACTACAAGTTCAGCCGGCTGCTGGTGGAACGAGTAGAGGCAGTGGACGGACAGTATGACGTCCTGTTCATCGGCACAGACTCCGGCCAGGTGCTGAAGTCTATCCACCTCCCTAAAGAACACGGTGTCCCCCAGGAGGTCACCCTGGAGCAGCTGCAGGTCTTCCAGCACAAGTCACCTGTGACGACCATGACACTGTCCAAGAAAAAGCAGTGGCTGTTTGTGGGTTCTGCAGAGGGTGTGGCCCAGTTGGCTCTGTTCCAGTGTGAGTTGTACGGCCAGGCCTGTGCTGAGTGCTGCCTGGCCAGAGATCCCTACTGCACCTGGGATGGACACGCCTGCAGCCCCTTCATGCCCATCGCACGCAGGAGGAACGCTCGTCAGGTTGGTGATgaggaggatcccctaacccagTGTGTCATACAAGGAGCCGGTCTGCAGGTGGAAGCAGAACAGAGGATGATGATGGTTGCAGAGGGTAACAGCACATACCTGGAGTGCCTGCCCAAATCCAGACATGCGGCCGTGACCTGGTACAAACAGGCAGGAGAGAACAGCCCTGAGCTGAATCAGTTGCAGTCGGGAGAGCAGCTGgtggtgacagagagaggtgttCTGATCAGTCGGGCCAAGACGGGTCACTCTGGTGTGTACCACTGTCAACTGGAGGAGCACGGCTTCCACTGGACCGCCGTCATTGTGCATCTGAGTGTGTGGAGCCCCTCCCATGCCCTCTCCTGGTCCACCAGCAACCGCAACCCCAACTCCAGCCCAGACGCCTCCCAACCCTGGTACCAGGACGTCATGGCCCTCATCCACCCCAGCAGCCTGGAGCAGCACTGTCAGAGGCTGGGCTTCCGGCGACGACGCAACCGCGGCCAGGATCAGACCAAGGACAGTGACCACAAGACAGGGGATGGCCCCAGGGGCGAGAGGCACAAACATGGAGGccgaggtggaggaggtggaggaggaggaagaggaggcgggAGGAAGAGCAGGAGCAAACCCAAGCAGAGGTCTCCGCGAAGCTCTTAGATGCTCCACTGCGTACAATGTGCTTTCTCCTGACTTTACGCTCTCAAACACTGTctcactctcacaaacacacacatacacatttacaAAAACTCATATTCATGTAGAATGGGGACATAGGAGGCTCGGCGTGGGCCGGACTCAGAAGTGTGAATGTGGTTGCGTAGCGTGTTGGATGAAGGATGTACAGCATGTCCAAGAGACTGGTAGAGAATATATTAAGGCGTGAAGAGGACCTGGAAGAATGTGGTGTCTCACAAGACAGGGGAAAAAGGCCCTGAAGGTGAAGCTAGGATCTGTCCTaatgaaagacagagagggagtcaaAAGGACACAAGCATGTGAGAGAGACATAAGTTTATTCGAGGTAAACAATGTGTGATTTGTCTTTgatgtaaaaaagaaaaaaaaagaaaagaaaaaaaactgcTACATTTTCCTTATTTAACTTTGTGTGTcatatttatttctgttttgaatcAAACGGTTAGTTTCAGTAGTTGTATGAGGTCAGTTGTATTTAGTAAACGCTCTGTGGTGTTCATTAGGCTTTCAACTCAAGCTTGACTCCTCACAACTGGCCTCATTGATGCCGGGTGTGTTTGACATTAGCGCACAGAGAAATGAAAAGGGGAAACTCCGAGTCAAACCAGCAAATCTGCCAAAATGAAATGCAGCAAAGCTAAAGCACTTTTAAATGCTGTAGAAAAATAAACGTTCGTTTCGAGCTCTGGAGCAGCTGCATAAATGCAGAGAGGCCTTTTAAATGTGGCCAGACTTCTTTTACCACATAAAAGACGGAACCAATACTGAGCAAGGTCctcgttagtgtgtgtgtgtgtgtgttttattcctTACCATAAAGTATGATGGAATCCATAAAGAAAGTATTTTGAAATGAAACTTGTAATGTTTATGCTTTCCTCAAAGACCTTGTTCAGATCTTTCCCTCATTCATTATATGCGCTTTTGTATTTCACTCTGTAGCCTATATTTACGTCTCTGTGCCAATATTTCTTTGCGAATGGAAATAAAATGTTTTCAATTGATCTCTCCCAAGTTAAGGAGACACACAGTGTAGATACACCATTTTGCCAGTATGTTTTCTTACTTTCCCTTTTTTTGTGGCATAGGAAGCTTGTCCATCATCAAGAAGACGCACACATGGATACgcacacccacactaacacagAGTGTGGAAACATGATAGACCTGGAAGATGTAATCCATCGTCAAACAACCCACATTTCCTCATCCAATATCTTCCAATTTAAAAAGAATTCATTCGACATAAAAAAACGCAAACATTAAATGAGTAAATAGAAACATTGAAATAGCCAAGTGGTTCTGACAAACAGGATATCCTGTCGGGTCTGAACTGaaaaaaaggaaaccgcacataCGAACATGCTCAGTGCATAGTGCcgttgggatggagggagaggtggttaTGTTAAGGTGAGATCTCAATCACCATGGTTCAGATTTGACTGAACGTTTGCCTTCTGTAAGCTGCTCTCTCCGGAGTAGCACAGAACATAACATGCTTCAGGGCCTTCAGGTCTCCTCAAGTCCAACTAGGACTTCATCTAAATGGTAGTGAGATAGCGTTTAAACATATGGtatgtgtattgttgtgtgtttgccTCGGTACTGGTGTCCtctaaacaaataaacaaattaacGTACAATTTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615700.2 True 4336 mRNA 0.51 17 41098740 41127371

Neighbor

gene id symbol gene type direction distance location
borcs6 LOC106572262 coding downstream 2751 41089018 ~ 41095989 (-)
xpc xpc coding downstream 45633 41041299 ~ 41053107 (-)
arih2 arih2 coding downstream 64338 41026250 ~ 41034402 (-)
impdh2 LOC106566785 coding downstream 73947 41013379 ~ 41024793 (-)
dalrd3 dalrd3 coding downstream 98037 40985469 ~ 41000703 (-)
rhoab LOC106572261 coding upstream 14396 41141767 ~ 41147730 (-)
tmem115 LOC106572260 coding upstream 30708 41158079 ~ 41164529 (-)
LOC110532095 LOC106572303 coding upstream 39857 41167228 ~ 41237253 (-)
LOC110532099 LOC106572257 coding upstream 337288 41464659 ~ 41491370 (-)
LOC110532102 LOC106572255 coding upstream 515811 41643182 ~ 41665512 (-)
G804355 NA non-coding downstream 61201 41037064 ~ 41037539 (-)
G804354 NA non-coding downstream 62657 41035820 ~ 41036083 (-)
G804353 NA non-coding downstream 62963 41035572 ~ 41035777 (-)
G804269 NA non-coding downstream 87915 41010051 ~ 41010825 (-)
G804259 NA non-coding downstream 89603 41008889 ~ 41009137 (-)
G804407 NA non-coding upstream 5153 41132524 ~ 41132750 (-)
G804423 NA non-coding upstream 51473 41178844 ~ 41179405 (-)
G804425 NA non-coding upstream 59911 41187282 ~ 41187525 (-)
G804470 NA non-coding upstream 168578 41295949 ~ 41370370 (-)
G804548 NA non-coding upstream 318061 41445432 ~ 41445637 (-)
G804255 NA other downstream 113495 40984482 ~ 40985245 (-)
wdr6 wdr6 other downstream 182766 40904738 ~ 40916073 (-)
G804307 NA other downstream 186382 40862589 ~ 40912358 (-)
G804137 LOC106572278 other downstream 524790 40571014 ~ 40573950 (-)
selenok selenok other downstream 648800 40395732 ~ 40450018 (-)
G804543 LOC106572259 other upstream 309659 41437030 ~ 41437971 (-)
LOC110532119 LOC106572245 other upstream 1000481 42125255 ~ 42141613 (-)
G806724 LOC106572208 other upstream 2204559 43331930 ~ 43339589 (-)
prdm16 prdm16 other upstream 2813195 43781726 ~ 44015554 (-)
tafa5l LOC106572193 other upstream 3121427 44247091 ~ 44292397 (-)

Expression


Co-expression Network