XLOC_026704 (ubfd1)


Basic Information

Item Value
gene id XLOC_026704
gene name ubfd1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 43942032 ~ 43959873 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051996
AATCGCAAAGTCACTACGGGAAGCCGCGGAGCTCAATCACTGACAGCACGCTCTTTCCCAGAAGCCTTTCCTCATATTGTACACAATCATCATGGCGGCGCAGGATGGTAGGTAGcatgaaaatGAAGTGAGGTAGTAGGTATGGAGGCTGAGGTCACACAGAAGGTACCAGAAGTGTTGTGCGAAGCTGCGGGACAAGGAGACGAAGCAGGCAGCGAAGCAACATCTCTTACCGATGGTGAAAGCACATCAGCTGAGCCTGCTGCGGTCAGCAACGGAGAGGAAAGTGACGAGGGGAAAGAGATGGTGGACGTGAAAATCATTtggaacaaaaacaaatatgatcTTAAAATCCCTTTAGATGGCACCGGTGCCAAGCTGAAAGAGAAGATTCACGCTCTCACTGGTCTTCCACCCGCTATGCAGAAAGTGATGTACAAAGGACTGCTACCTGAGGAAAAGACACTTCGAgaaattaaagttacaaatggtgcAAAGATCATGGTGGTCGGATCCACAATAAATGATGTACTAGCTGTAAATACACCAAAAGAAGTTATTCAGCAAGAGGTTAAAGCCGAGGAGAACAAAAAGGAGCCATTGTGCAGACAAAAGCAACACAGAAAGGTTTTGGACAAAGGTAAACCAGATGACGTCATGTCATCAATAAAAGGAGCTAAGGAGCGTCTGCCAACAGTGCCTTTATCAGGAATGTACAACAAATCTGGTGGTAAAGTACGACTAACTTTCAAACTGGAACAGGATCAGTTGTGGATCGGAACAAAAGAAAGAACAGAAAAAATCCCTATGGGTTCCATTAAAAATGTTGTGACTGAGCCAATAGAGGGTCACGAGGACTATCATATGATGGCATTTCAGCTGGGTCCGACAGAAGCCTCACAATATTGGGTCTACTGGGTGCCTGCACAGTTTGTTGATGCAATCAAAGACACAGTTCTGGGAAAATGGCAGTATTTTTAACGTGCCTCTATAGACACTGAAGAATTGGGATTCAGAGAAGAGATTGAGAAATATTAACTGGAGCCAACACCGTAATCTGaagaactgatttttttttctgaagtatATCCAGAGCAAACCGAAGGATTGCTGTTGGACTAAATATTTTGGGGGGGGGTTTTAAGTGCACTAAGTGTCAGCATCCCGTTTTTCAAACTATTTGACCACtcgtttttttaaaagcaatcccaAGCATAAACAGAAAAATTGTACAGAA
>TCONS_00051997
AAAATCGCAAAGTCACTACGGGAAGCCGCGGAGCTCAATCACTGACAGCACGCTCTTTCCCAGAAGCCTTTCCTCATATTGTACACAATCATCATGGCGGCGCAGGATGGTAGGTAGcatgaaaatgtacttaaatGCAATTTCCACCGTGTTTGCGGTGTTATCTCTAACCGTACAACCTCAAGTCCAGTCATTTGTGTCTTGTATTATTCTGAATGGACGTTCCTTTAACTTGTCAGGGCAAAACAACAGCTAGAAAATTTGTGATTAAAACAGCCATGTCGAAAACTTCGGCTGTGTCACAAAATCTATTGAGCTTTCTACTTCGACAGCATTTTGAGGGGTCATCGTGAGCGCGCACGTAACGTTTGACTATTTCTAAAACGTTCAAAAAGCATTTATAGTCTTATCGGGAGTGTTAATAACCGTAAAACGAACGTCCCATTTGAGCTCACAGTGCCCAGAGATGCTGTCTAGATAGGCAGCTCAATGGGTTTGGGACACAATCTTGCGAATATTAGCACAGCGGGCTGGCTAAGTTAACGATGAGTCAGTTGTGTAGGATTACAAAACGGTCCCGTCCATCAGGGAAGTGAGGTAGTAGGTATGGAGGCTGAGGTCACACAGAAGGTACCAGAAGTGTTGTGCGAAGCTGCGGGACAAGGAGACGAAGCAGGCAGCGAAGCAACATCTCTTACCGATGGTGAAAGCACATCAGCTGAGCCTGCTGCGGTCAGCAACGGAGAGGAAAGTGACGAGGGGAAAGAGATGGTGGACGTGAAAATCATTtggaacaaaaacaaatatgatcTTAAAATCCCTTTAGATGGCACCGGTGCCAAGCTGAAAGAGAAGATTCACGCTCTCACTGGTCTTCCACCCGCTATGCAGAAAGTGATGTACAAAGGACTGCTACCTGAGGAAAAGACACTTCGAgaaattaaagttacaaatggtgcAAAGATCATGGTGGTCGGATCCACAATAAATGATGTACTAGCTGTAAATACACCAAAAGAAGTTATTCAGCAAGAGGTTAAAGCCGAGGAGAACAAAAAGGAGCCATTGTGCAGACAAAAGCAACACAGAAAGGTTTTGGACAAAGGTAAACCAGATGACGTCATGTCATCAATAAAAGGAGCTAAGGAGCGTCTGCCAACAGTGCCTTTATCAGGAATGTACAACAAATCTGGTGGTAAAGTACGACTAACTTTCAAACTGGAACAGGATCAGTTGTGGATCGGAACAAAAGAAAGAACAGAAAAAATCCCTATGGGTTCCATTAAAAATGTTGTGACTGAGCCAATAGAGGGTCACGAGGACTATCATATGATGGCATTTCAGCTGGGTCCGACAGAAGCCTCACAATATTGGGTCTACTGGGTGCCTGCACAGTTTGTTGATGCAATCAAAGACACAGTTCTGGGAAAATGGCAGTATTTTTAA
>TCONS_00051998
GTGGTGAAGGCTGTAAAGATGAGCAAAAATCCTATTcccaaaacaacaacattataagTCCTAATGTCCGCCATCATCAGCTCAGCGTGTAAATCCTCATGTAAGATGCCGGAGTTTCAGCGATGGTGGCTTTTGGTCCATGTAAATGTTAACAGCATCTAGGAAAGCAAACTATGGGAAAGCAAGCCGGAAGTGAGGTAGTAGGTATGGAGGCTGAGGTCACACAGAAGGTACCAGAAGTGTTGTGCGAAGCTGCGGGACAAGGAGACGAAGCAGGCAGCGAAGCAACATCTCTTACCGATGGTGAAAGCACATCAGCTGAGCCTGCTGCGGTCAGCAACGGAGAGGAAAGTGACGAGGGGAAAGAGATGGTGGACGTGAAAATCATTtggaacaaaaacaaatatgatcTTAAAATCCCTTTAGATGGCACCGGTGCCAAGCTGAAAGAGAAGATTCACGCTCTCACTGGTCTTCCACCCGCTATGCAGAAAGTGATGTACAAAGGACTGCTACCTGAGGAAAAGACACTTCGAgaaattaaagttacaaatggtgcAAAGATCATGGTGGTCGGATCCACAATAAATGATGTACTAGCTGTAAATACACCAAAAGAAGTTATTCAGCAAGAGGTTAAAGCCGAGGAGAACAAAAAGGAGCCATTGTGCAGACAAAAGCAACACAGAAAGGTTTTGGACAAAGGTAAACCAGATGACGTCATGTCATCAATAAAAGGAGCTAAGGAGCGTCTGCCAACAGTGCCTTTATCAGGAATGTACAACAAATCTGGTGGTAAAGTACGACTAACTTTCAAACTGGAACAGGATCAGTTGTGGATCGGAACAAAAGAAAGAACAGAAAAAATCCCTATGGGTTCCATTAAAAATGTTGTGACTGAGCCAATAGAGGGTCACGAGGACTATCATATGATGGCATTTCAGCTGGGTCCGACAGAAGCCTCACAATATTGGGTCTACTGGGTGCCTGCACAGTTTGTTGATGCAATCAAAGACACAGTTCTGGGAAAATGGCAGTATTTTTAA
>TCONS_00051999
GTTTGGGGAATTTGCTAGATGATTCTGCGCCCTTGGACACCAGCTAGTTCAATTAGCTTTAAACGTGTACAGTATACTAGACACTAGTAATTATTGTAAACATACACCATCTCTTTTGTGaagtattaaaaacataaattcagAAAAGATCAGGAGTGTTGTCTAGTTTTCTTTCATAGGAGTTATAAAATGAAGGAAGTGAGGTAGTAGGTATGGAGGCTGAGGTCACACAGAAGGTACCAGAAGTGTTGTGCGAAGCTGCGGGACAAGGAGACGAAGCAGGCAGCGAAGCAACATCTCTTACCGATGGTGAAAGCACATCAGCTGAGCCTGCTGCGGTCAGCAACGGAGAGGAAAGTGACGAGGGGAAAGAGATGGTGGACGTGAAAATCATTtggaacaaaaacaaatatgatcTTAAAATCCCTTTAGATGGCACCGGTGCCAAGCTGAAAGAGAAGATTCACGCTCTCACTGGTCTTCCACCCGCTATGCAGAAAGTGATGTACAAAGGACTGCTACCTGAGGAAAAGACACTTCGAgaaattaaagttacaaatggtgcAAAGATCATGGTGGTCGGATCCACAATAAATGATGTACTAGCTGTAAATACACCAAAAGAAGTTATTCAGCAAGAGGTTAAAGCCGAGGAGAACAAAAAGGAGCCATT

Function

symbol description
ubfd1 Orthologous to human UBFD1 (ubiquitin family domain containing 1).

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050506-90 Orthologous to human UBFD1 (ubiquitin family domain containing 1).

Ensembl:

ensembl_id ENSDARG00000102827

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051996 False 1237 mRNA 0.44 7 43942032 43954971
TCONS_00051997 False 1446 mRNA 0.44 7 43942288 43954973
TCONS_00051998 False 1046 mRNA 0.44 7 43942288 43959873
TCONS_00051999 True 673 mRNA 0.42 3 43947351 43954343

Neighbor

gene id symbol gene type direction distance location
XLOC_026703 BX682557.1 coding downstream 52589 43878456 ~ 43889443 (-)
XLOC_026702 BX682557.2 coding downstream 66903 43866785 ~ 43875129 (-)
XLOC_026701 mslna coding downstream 69143 43835558 ~ 43872889 (-)
XLOC_026700 rmi2 coding downstream 106977 43828545 ~ 43835055 (-)
XLOC_026699 zgc:92162 coding downstream 171156 43757181 ~ 43770876 (-)
XLOC_026705 il4r.2 coding upstream 42427 44002300 ~ 44012804 (-)
XLOC_026706 il4r.1 coding upstream 89034 44048907 ~ 44060037 (-)
XLOC_026707 kdm8 coding upstream 121747 44081620 ~ 44094451 (-)
XLOC_026708 NA coding upstream 151672 44111545 ~ 44124370 (-)
XLOC_026709 NA coding upstream 372874 44332747 ~ 44335853 (-)
XLOC_026695 NA non-coding downstream 752947 43187194 ~ 43189085 (-)
XLOC_026694 NA non-coding downstream 915297 43024821 ~ 43026735 (-)
XLOC_026691 CABZ01079183.1 non-coding downstream 1075832 42866083 ~ 42866200 (-)
XLOC_026716 NA non-coding upstream 1579913 45539786 ~ 45543451 (-)
XLOC_026719 NA non-coding upstream 1872204 45832077 ~ 45843700 (-)
XLOC_026722 NA non-coding upstream 2193254 46153127 ~ 46217473 (-)

Expression


Co-expression Network