LOC110532109


Basic Information

Item Value
gene id LOC110532109
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 41992351 ~ 41994511 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474807.2
CCTCAACTCACTCGGCAGGTTCTGGGCTCAATGGATTGGTCTTCAAAGGACTCCAAAGAACTTCAAGCTACTCTGGCACCCATACTGCATCAACAAGTCAAAGCTCCGGGCCTTCCACCCAGCCGGGGCCTGATGTCTTTCAGGCATCCTGGTCCCCTACCCATCTCTTAAAGCTCTGGACCTTCTACCCATGTGTCCCCTACCACTAAGAAGACCAGGCAGGAGGTAACCAGCTCTGTATTTGGCACTTGGCATTGCATTATGAAAACATGCATTTCACATTTGATTCAAATGGGTGACAGTAAAGCTGCTTTAAATTTGTCATAATCTTCTCTCGGGCATCTTGAGTCCATGGGCTTTGCCACTGTGTCCAGAGTTTCAGATTCACCAGAAAGGATCCAAGAGTCTTCGGAGGATCAGGGAAATGCATCCAGCTACAGCAGCCTCCTTCACCTCGTCCTGTGCAACATCCACAATCTCCACCTTCCCAGCTGGACACAAGCTTTAGCTCCCCTGATTACAAGGACCAGGGCTCTGACGACATACTGTACCTCCAACATCCACCAAATCAAGTCTGGAGTCTTGAGTTCGACTCAACCACATCTTAAACAAACCGTGATCAGTGGACCCAAAGGAAGTATACTGTGCATGGAGTCCAAGATCATGGATCTCATTAAGCTTATCCAAAAGTGTTGGTCTGCCATAATCAACACCAGCAAAATATTAAAAGGAAGACAAATCGAGATCAACTGGCAGAGCGCATCAAAGGATGTATGGGGAAGTTGGGAATCTTGCCCGAATGTTTGAAGGATGTCACAGGCTAATGTAGTTGCACCGTCTTCAGTGCTTTTCACTGGTGACACTTTCACAGACATAAATTACTAGGCTGAACTATGTCCAATACAGTTCCCTTCACAAACAACATACTTTTTAGTCCTCTTACTTCCTACCCGTCACAACCCAGGATTACAGACAGACCGAAGCAGGAAAAGATCATTTCCACTATGGTTCAGGATGGAAATGAAGGCAAAGCTGTGCACATCTGTGGTGATGGAAGGAATGACAGACCTGGCTGGCTACTCCGCTAAATTTACGACATATAGCTTCATGGATGACAAGACCAAGAAAGTAATTCAAGCTAATGTGATTTCGGTCACTGAAGCCACCAGGTCAATTTCAAGGACTGAACAGCATACTGACAGAGGGTGTACCTGTAGCGTTTATAACTACTCTTGTTCACCAGGGCTGGCACAGTTATCGTATAATCGTGTAACAGACACTTATGGACAATAAACGTGAACTCAAAAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC109103518

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474807.2 True 1308 mRNA 0.46 5 41992351 41994511

Neighbor

gene id symbol gene type direction distance location
LOC110532110 NA coding downstream 23398 41955175 ~ 41968953 (-)
LOC110532104 LOC106572254 coding downstream 235559 41693922 ~ 41756792 (-)
LOC110532103 mapre1 coding downstream 310961 41672687 ~ 41681390 (-)
LOC110532102 LOC106572255 coding downstream 326839 41643182 ~ 41665512 (-)
LOC110532099 LOC106572257 coding downstream 500981 41464659 ~ 41491370 (-)
LOC110532116 LOC106572333 coding upstream 81066 42075577 ~ 42076849 (-)
LOC110533012 LOC106572332 coding upstream 90820 42085331 ~ 42087302 (-)
rnf207b LOC106572244 coding upstream 103759 42098270 ~ 42114365 (-)
LOC110532119 LOC106572245 coding upstream 130744 42125255 ~ 42141613 (-)
LOC110532120 LOC106572241 coding upstream 160574 42155085 ~ 42160574 (-)
G805210 NA non-coding downstream 24989 41967160 ~ 41967362 (-)
G805190 NA non-coding downstream 30851 41909166 ~ 41961500 (-)
G804908 NA non-coding downstream 252196 41739582 ~ 41740155 (-)
G804902 NA non-coding downstream 261105 41730824 ~ 41731246 (-)
G804885 NA non-coding downstream 298516 41693509 ~ 41693835 (-)
G805160 NA non-coding upstream 5649 42000160 ~ 42003843 (-)
G805246 NA non-coding upstream 30762 42025273 ~ 42027035 (-)
G805253 LOC107745311 non-coding upstream 41384 42035895 ~ 42036370 (-)
G805254 NA non-coding upstream 42291 42036802 ~ 42037011 (-)
G805256 NA non-coding upstream 44605 42039116 ~ 42039543 (-)
G804543 LOC106572259 other downstream 554380 41437030 ~ 41437971 (-)
G804255 NA other downstream 1007106 40984482 ~ 40985245 (-)
wdr6 wdr6 other downstream 1076377 40904738 ~ 40916073 (-)
G804307 NA other downstream 1079993 40862589 ~ 40912358 (-)
G804137 LOC106572278 other downstream 1418401 40571014 ~ 40573950 (-)
G806724 LOC106572208 other upstream 1337419 43331930 ~ 43339589 (-)
prdm16 prdm16 other upstream 1946055 43781726 ~ 44015554 (-)
tafa5l LOC106572193 other upstream 2254287 44247091 ~ 44292397 (-)
G807941 NA other upstream 2366905 44361416 ~ 44362166 (-)

Expression


Co-expression Network