LOC110533012 (LOC106572332)


Basic Information

Item Value
gene id LOC110533012
gene name LOC106572332
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 42085331 ~ 42087302 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021617144.2
gtggcgctgatgtttaggccaaggtatgtatagttttttgtgtgctctatcAACCTGCTCCCGAGAGGCACACTCTTTGTCCTCCCAGCAATAAATACTTCATTGAGCATGTGGCAGCACGGATCTCACAATGCCCCTCCCAGCCCTCCCATTGGCTCAAGGCTGTGAGAAACTCCAACAAGCCCAAGACCTACACATTCATGTGGAGATTTAGGAGTATAAATAGGAGGGAGAACCAGAGGGAAGACAGCACATATCCAATTGGCTCTTTACTGAGACTTCAGCTCAACAGAACTACGACTGCCACAGCCATGGCACCAACAATGACTAGACAGATTACCTACTCTGAGCAGAACCTCTCACTTACTAAGGTAAAGAAGCCAGCTGTGGAGAAGATGCGCAGAGATCGCATCAACACCAGCATCGAGCAGCTCAAGTCCCTCCTGGCTCCCGagttcctcctgcagcagccTGACTCCAAGCAGGAGAAGGCTGATATCTTGGAGATGACCGTCTATTTCCTGAGCCGACAGCAGCAGGCAGGGAGTTCCTCCACCGTGGTAGCCAATGGTAGCTACTCTCACTGTGTGCAGGAGGCTGTCAGCTTCCTGTCGCAGTGTGAGGTGAAGACACAGTCCCACAGCAGGCTGCTGACCCACTTCCACAGCCTGcagacatccagccaacacaGCCAGGCTCCCAGGTCCCTCTCCCCGCTGGGCTCCCCAATAGACCAGGCCACCACCAAGGGTGTGATGAGACCCATCTCCCATCCGCTCTGGAGGCCCTGGTAGAGCAACGCTTCAGACCTTTTCATGTCAGACAAACGGAATTAGACAGGCCAGTGTATGTTTTGACAAGCATGGACAGTGGTGTTCGGAGTGACAGAGGTCTACTTCTTCTGCATTTGGCAAGAGATGCTATGTCATTAGTCTTCATCCAGATGAAGAAAGGGCATGTTTCGCCAGTATTCCTTTGAAAGGAAGGATTCTATGAAATGATTCAGATTGGTCTGGATACATACTATGTATTTGAAAATGTACACTGATTTAATAACAGTGTTTCTCTTATTTGATGTTCTCATTTGAGAACCTTAACTCTGACAGTACAGAGTTAAATTATTGTAATAACATACTTGCATTGTATTTCTAACCCATGTTGAGTTGCTACTCTTTGGGTCTGTGACCACCTGTTTGTTAGAATTTGTCAAACTCTTTGTCATTGAATGATAAAATGTATCAATTTGATGTAGCTACATTATCACACAAATGGATCCAATGGATCTACACTGAAtgtaaatcatgttatgattgtGTAAAATCAATGTCATTGATAATACAGTATTCATTGTTCAAAGAATATGTTAAAAAGTTCATTGTAACTTCGAAGATACACCTTTCCTAAAGAGATTTTGTGTATTCCACAAAAGGTTTTGTAAAGAAAAAAGCTTTTCTGTGAAAAGTTTGTTTGCCTTTATTGGTTTAAATGACATTCCATTTGGAGTGACATGCCATCAAGTGTTCGAAAATAAATTAAAAACTTGTACGTTTCTTAAAATTGCATTTTTGGTTTTATCTTCTCTGTCGTACGGAGTCATATATCTACACAAAGTTCTCCACCCACATCCATTCTGATTACAACAGTAGTATGGCTAACTTTGTCATCCACAAAGTTAAAAAGAAGACCACTCTAGTTAATATATAAAACATATTGGTTGATTGACTATATTCACAAACCTAAATTTAGATTGTGAGGAGCACCTATCCTAAAGGTATAGAGATGTCAGTTCAATATTGGTTCCTGATTGATAAACCAAAACCTTGAAACCTATTGTTGATTTGTGGTTGGACAAAACCTATGTA

Function

NR:

description
transcription factor HES-5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021617144.2 True 1862 mRNA 0.42 2 42085331 42087302

Neighbor

gene id symbol gene type direction distance location
LOC110532116 LOC106572333 coding downstream 8482 42075577 ~ 42076849 (-)
LOC110532109 NA coding downstream 90820 41992351 ~ 41994511 (-)
LOC110532110 NA coding downstream 116378 41955175 ~ 41968953 (-)
LOC110532104 LOC106572254 coding downstream 328539 41693922 ~ 41756792 (-)
LOC110532103 mapre1 coding downstream 403941 41672687 ~ 41681390 (-)
rnf207b LOC106572244 coding upstream 10968 42098270 ~ 42114365 (-)
LOC110532119 LOC106572245 coding upstream 37953 42125255 ~ 42141613 (-)
LOC110532120 LOC106572241 coding upstream 67783 42155085 ~ 42160574 (-)
LOC110532125 vps13d coding upstream 175936 42263238 ~ 42289818 (-)
LOC118966051 NA coding upstream 210649 42297951 ~ 42299962 (-)
G805256 NA non-coding downstream 45788 42039116 ~ 42039543 (-)
G805254 NA non-coding downstream 48320 42036802 ~ 42037011 (-)
G805253 LOC107745311 non-coding downstream 48961 42035895 ~ 42036370 (-)
G805246 NA non-coding downstream 58296 42025273 ~ 42027035 (-)
G805160 NA non-coding downstream 81488 42000160 ~ 42003843 (-)
G805464 NA non-coding upstream 30203 42117505 ~ 42117752 (-)
G805467 LOC102779685 non-coding upstream 31213 42118515 ~ 42125165 (-)
G805481 NA non-coding upstream 57235 42144537 ~ 42144786 (-)
G805482 NA non-coding upstream 57776 42145078 ~ 42145395 (-)
G804543 LOC106572259 other downstream 647360 41437030 ~ 41437971 (-)
G804255 NA other downstream 1100086 40984482 ~ 40985245 (-)
wdr6 wdr6 other downstream 1169357 40904738 ~ 40916073 (-)
G804307 NA other downstream 1172973 40862589 ~ 40912358 (-)
G804137 LOC106572278 other downstream 1511381 40571014 ~ 40573950 (-)
G806724 LOC106572208 other upstream 1244628 43331930 ~ 43339589 (-)
prdm16 prdm16 other upstream 1853264 43781726 ~ 44015554 (-)
tafa5l LOC106572193 other upstream 2161496 44247091 ~ 44292397 (-)
G807941 NA other upstream 2274114 44361416 ~ 44362166 (-)

Expression


Co-expression Network