LOC110532118 (LOC106566808)


Basic Information

Item Value
gene id LOC110532118
gene name LOC106566808
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 42094188 ~ 42099949 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615735.2
CAAGATTAATGAGGAAGTTCTGTGATTGTGGAAAACTCGCGAGAGCCCATAGGGAGTAACGTTACTTCATCATGGCAGGCAATAAGTTGGCATTAGAGGGAAAAATAAGTATTATAAGCTTTATTTTAGGGCTTGGCGTTGTTATAATTCCCCTTATTAGAACATTCGCTGGACACCTTGACTGGGTATTCGACTATCTCACTGGAGTGAGGGGGAAAATAGCTATTGCGGTGTACATCGCTGTTCTCAATGGCTTCTTGCTAATCATATATAAGGGACCTCTATATAAGGTTGCTGTGCGAGCCTGCTTCCTTGGTTTTACTTTTGGGTGTGGCTTGATCATAAGCTTTTCCCAAACTACATGGACACACTTTGGCTGGTACATGTGTTCCATGTCTTTCTTCCACTACTCTGAGTACTTGGTGACGGCCATCATTAACCCCCGCAGCCTGTCTCTGGACTCATTCCTGCTCAACCACAGTGTGGAGTACACCGTGGCTGCCGTCTCCTCATGGGTGGAGTTCACTATAGAGAAGCTCTCTATCCCAGAGCTGAAGCAGCTGAGCTGGCTCAGCCTGGTGGGCCTGGTGATGGTGCTGTGTGGGGACTTCCTGCGTAAGTCTGCCATGCTGACGGCTGGCTCTAACTTTAACCACATCGTCCAGAACGAGAAGGCCCAGAGCCACGTGCTGGTCACCGATGGGGTCTATGCCTTCTTCAGACACCCGTCCTACGTGGGCTGGTTCTACTGGAGCATTGGCACACAGGTGATGCTGTGCAACCCTGTCTGCATCGCGGGTTACACCATGGCCAGTTGGCGCTTCTTCCGTGAACGGATCGAGGAGGAGgagctctctctcctccatttcttTGGAGAGGACTACCTGGAATACAAGAAGAAGGTGGGCACCGGCCTGCCCTTTATTTCAGGCATCCGCATCAACAGCTCCTAGGTGTGAGAGATGGGGTCCTGGATGTATGAacatggcagacagacaggcactgtGAGGGGCAGCCCTGGTCAGCATACTGTGGATTAGCCCTTGTGGTCGCCCGCCCTGGAGGGGTCTAGAGCTCACGGAGACTGACACCTACGAGCGTGGTAAAGGGCTCCCCAAAAACCTGGGTAGACGGACTCACTCAAAAAGAAACGACACCCCCCAATGTTGTATATCTATTGCACACATCCAACCACGTCTTTGGTTTGGTTAGTTTGACTACTAAgagttattttttttcttcattttttttcaTCTCCAATGTTTCCCTTTTCTGTGTTTTCCATAGGGAGGAGTTGAGTTTCTTCAGTGGATGCTGAATGGATTTTTAGCTTGTGTTACTGAATCAAAGTGCTGTAATGAGCCTGGTCGAGTGTCTGCTATTCCTTGTTTGTCTGGCTTATCACTAAGTCATCATTATTAGGTCTCAGCGTTTACAACAATAGTTTTACACAAGATTAGGGATGCACAATTTCAACTGCCCTCGTACATATTCTTTCCCAGTAGGTAAATCTGCGCTAAGAAGCATTTATTTCTGTGTGACTGTTGTACATTTACAAAAATTTCCCAAAATGGCAGCAAAGTGGTTGCTTGCAACATGGTCTTTGCCCCATAAGTTAATGAACTTTTCATAAATTATAAAATGCCTTTTGATGGTAATCAAATGTCAAAATATGCCATGAGAAAATATTGGTTATAGGTAACGGCCCAGAATTTCTATACTGATGCATCCTTACCCAAAATGATTTATTTTAAATGTGTTGGACCCGGTTCAGGGAACAAAACTGGAAAATAAAATGAAGGAACTGAATCGGGAACGAAAGCAATCcatactgttccggaacagaaccgttattttaaaagcatgcgAACCGGTTAACATTctagccatttttttttttttttttttcatcccaCAAAAGAAACGAAACAAAGCGCATGTGCAGAGCCCTCTCTATCACTGAAACTTATTCCAGCGTCTGCCTGCAAACTAAAAATCTTTGCCTGTGCATGTTTAGGTTACCTGCCCCTCCCCCACctgaagcataggctactgtactgaacttAGAAGCATGAGAAGATAGGGAGAGATCTTTTTAATTAGAGAAGTGGattaactttttcaatgctagttaaagATACTATAGGCCTAGTTGAGTTTTAGATTGGATTtgttaactacaaaaaggtaagcTGTGTGTTTAATTCTGGTGCTGCTCTTCACACAAGCGtgtgagctagctagctcaaaGTCTCTCCTAGGGAAAATTCTGTGaacctaattcagataatgcatgtcttAAAGAGGGCCAGCGCTTCAAGCCTGCTCAACCCGCTCGCTCTCCCCCCACCTGTAAATTTTAAGTAGCATCTTGCGCCATAGGCTACACTGGTCTGTCCATCACgcatgtaaacaactagcttgcctgctctatctgcactgattgctgaagtcattctaatgagctaaatgtaaaaaaaatatattaaaaaatgtCACAGGTTTAAGACCGGTTCAGAGATGTATTTTGCTGATCGGAACTGTGGAATGGAATGggggaaattattatttttttttagaaaactttggttccaacccctgattTTAAATTCACATATCCCATGTCCACTCAGGATCAAAAAGCTGTACTATCAGAAATCTTTTGCAAATTTGACAACCTGAGCAAGTCGTAGCCTGGTTCACGGATTTCTCCAAACGGTTCGGCGTAATAAGTCAGAAACATCTACTTTGTAAGTCATTTAAAACATAAGGAACACTGACAATCCGTTCACTGTTCTATTCCAGTCTGCTGTAAGTCTGAATGTCCCCTGGGTATAGACTATGAATCAGGGGTGTTCTTCCATAGGGTTTTTAGTAATGGGGGCACTCACTAATAGTCATCTTTAAAATGCATTcgctctcacacagtctctctctacccccacttgATCATCACTCCATCTATTTATTTGTTCTGTGTGCTTGTCTCCTCATGCTCACTGTGTATTAAAACCAACCAAAAGATGCATTCCTATGGCTAAGGGGTTCAGAGAGCTACACCCAACATGGCTTCCTTCTGAACTACCGCAGCTTGTCTCAGGTGAAAGGTCGCCTCTGCCCTCCACTCTGTATGCCCAGACTGTATGGAGTGCAAGAGGAGTATGTCTGTGAGTGAAAGAGAATTTGCGAAATTAGAACAGTCAAAAGCACTTAACTGTTGTGCaagatgagtgtgtgtgagttagtTTCTGAAATTAGGACAGTCTAGAGCACTGTAAAAGTCATGTGTTACATGAATACAGATGAGATTCTGTTTTAATAAATATAAGAGCACATTCAGTTGGCTGCAGACATATGATAGTTTGCTGCTCAAAGCATGATACAGCTGAGCTGAAGGTGGAAAAATCCAGTTGTGTTGCACTACAGTATAACAATACTACAGTTTATTACaggtaaataaaaaatgtatcatgCAGAGGGTGTACTTATCTAACTCTTGGTTGATAACTTTTTTTTCACTTTACTGACATTTTCTGAATTGAATGAACACCATTGTCCTGTCAAA
>XM_021615736.2
cagtagtagctagctaacgtctgAAACAAGATGGCTAGCAGTAACATTAGCTAAGCTACTTAGCTAGCCATCTTGATTTTATGTTGTATTTGCCCATTCAAAACGGCATTCGGCTAGCTAGGCTTATTCTAAATGATCAGTTATTAATTGGCGCGCTTCTTTCTGACAATGTATtgtgctaatgttagctggctaatCCTATTAGCTGAATTGGATTGAGACAGCTGTCACCCTGATTGCCTAAAGTAGAACTCTAATTTAACGGTTGCTGTGCGAGCCTGCTTCCTTGGTTTTACTTTTGGGTGTGGCTTGATCATAAGCTTTTCCCAAACTACATGGACACACTTTGGCTGGTACATGTGTTCCATGTCTTTCTTCCACTACTCTGAGTACTTGGTGACGGCCATCATTAACCCCCGCAGCCTGTCTCTGGACTCATTCCTGCTCAACCACAGTGTGGAGTACACCGTGGCTGCCGTCTCCTCATGGGTGGAGTTCACTATAGAGAAGCTCTCTATCCCAGAGCTGAAGCAGCTGAGCTGGCTCAGCCTGGTGGGCCTGGTGATGGTGCTGTGTGGGGACTTCCTGCGTAAGTCTGCCATGCTGACGGCTGGCTCTAACTTTAACCACATCGTCCAGAACGAGAAGGCCCAGAGCCACGTGCTGGTCACCGATGGGGTCTATGCCTTCTTCAGACACCCGTCCTACGTGGGCTGGTTCTACTGGAGCATTGGCACACAGGTGATGCTGTGCAACCCTGTCTGCATCGCGGGTTACACCATGGCCAGTTGGCGCTTCTTCCGTGAACGGATCGAGGAGGAGgagctctctctcctccatttcttTGGAGAGGACTACCTGGAATACAAGAAGAAGGTGGGCACCGGCCTGCCCTTTATTTCAGGCATCCGCATCAACAGCTCCTAGGTGTGAGAGATGGGGTCCTGGATGTATGAacatggcagacagacaggcactgtGAGGGGCAGCCCTGGTCAGCATACTGTGGATTAGCCCTTGTGGTCGCCCGCCCTGGAGGGGTCTAGAGCTCACGGAGACTGACACCTACGAGCGTGGTAAAGGGCTCCCCAAAAACCTGGGTAGACGGACTCACTCAAAAAGAAACGACACCCCCCAATGTTGTATATCTATTGCACACATCCAACCACGTCTTTGGTTTGGTTAGTTTGACTACTAAgagttattttttttcttcattttttttcaTCTCCAATGTTTCCCTTTTCTGTGTTTTCCATAGGGAGGAGTTGAGTTTCTTCAGTGGATGCTGAATGGATTTTTAGCTTGTGTTACTGAATCAAAGTGCTGTAATGAGCCTGGTCGAGTGTCTGCTATTCCTTGTTTGTCTGGCTTATCACTAAGTCATCATTATTAGGTCTCAGCGTTTACAACAATAGTTTTACACAAGATTAGGGATGCACAATTTCAACTGCCCTCGTACATATTCTTTCCCAGTAGGTAAATCTGCGCTAAGAAGCATTTATTTCTGTGTGACTGTTGTACATTTACAAAAATTTCCCAAAATGGCAGCAAAGTGGTTGCTTGCAACATGGTCTTTGCCCCATAAGTTAATGAACTTTTCATAAATTATAAAATGCCTTTTGATGGTAATCAAATGTCAAAATATGCCATGAGAAAATATTGGTTATAGGTAACGGCCCAGAATTTCTATACTGATGCATCCTTACCCAAAATGATTTATTTTAAATGTGTTGGACCCGGTTCAGGGAACAAAACTGGAAAATAAAATGAAGGAACTGAATCGGGAACGAAAGCAATCcatactgttccggaacagaaccgttattttaaaagcatgcgAACCGGTTAACATTctagccatttttttttttttttttttcatcccaCAAAAGAAACGAAACAAAGCGCATGTGCAGAGCCCTCTCTATCACTGAAACTTATTCCAGCGTCTGCCTGCAAACTAAAAATCTTTGCCTGTGCATGTTTAGGTTACCTGCCCCTCCCCCACctgaagcataggctactgtactgaacttAGAAGCATGAGAAGATAGGGAGAGATCTTTTTAATTAGAGAAGTGGattaactttttcaatgctagttaaagATACTATAGGCCTAGTTGAGTTTTAGATTGGATTtgttaactacaaaaaggtaagcTGTGTGTTTAATTCTGGTGCTGCTCTTCACACAAGCGtgtgagctagctagctcaaaGTCTCTCCTAGGGAAAATTCTGTGaacctaattcagataatgcatgtcttAAAGAGGGCCAGCGCTTCAAGCCTGCTCAACCCGCTCGCTCTCCCCCCACCTGTAAATTTTAAGTAGCATCTTGCGCCATAGGCTACACTGGTCTGTCCATCACgcatgtaaacaactagcttgcctgctctatctgcactgattgctgaagtcattctaatgagctaaatgtaaaaaaaatatattaaaaaatgtCACAGGTTTAAGACCGGTTCAGAGATGTATTTTGCTGATCGGAACTGTGGAATGGAATGggggaaattattatttttttttagaaaactttggttccaacccctgattTTAAATTCACATATCCCATGTCCACTCAGGATCAAAAAGCTGTACTATCAGAAATCTTTTGCAAATTTGACAACCTGAGCAAGTCGTAGCCTGGTTCACGGATTTCTCCAAACGGTTCGGCGTAATAAGTCAGAAACATCTACTTTGTAAGTCATTTAAAACATAAGGAACACTGACAATCCGTTCACTGTTCTATTCCAGTCTGCTGTAAGTCTGAATGTCCCCTGGGTATAGACTATGAATCAGGGGTGTTCTTCCATAGGGTTTTTAGTAATGGGGGCACTCACTAATAGTCATCTTTAAAATGCATTcgctctcacacagtctctctctacccccacttgATCATCACTCCATCTATTTATTTGTTCTGTGTGCTTGTCTCCTCATGCTCACTGTGTATTAAAACCAACCAAAAGATGCATTCCTATGGCTAAGGGGTTCAGAGAGCTACACCCAACATGGCTTCCTTCTGAACTACCGCAGCTTGTCTCAGGTGAAAGGTCGCCTCTGCCCTCCACTCTGTATGCCCAGACTGTATGGAGTGCAAGAGGAGTATGTCTGTGAGTGAAAGAGAATTTGCGAAATTAGAACAGTCAAAAGCACTTAACTGTTGTGCaagatgagtgtgtgtgagttagtTTCTGAAATTAGGACAGTCTAGAGCACTGTAAAAGTCATGTGTTACATGAATACAGATGAGATTCTGTTTTAATAAATATAAGAGCACATTCAGTTGGCTGCAGACATATGATAGTTTGCTGCTCAAAGCATGATACAGCTGAGCTGAAGGTGGAAAAATCCAGTTGTGTTGCACTACAGTATAACAATACTACAGTTTATTACaggtaaataaaaaatgtatcatgCAGAGGGTGTACTTATCTAACTCTTGGTTGATAACTTTTTTTTCACTTTACTGACATTTTCTGAATTGAATGAACACCATTGTCCTGTCAAA

Function

NR:

description
protein-S-isoprenylcysteine O-methyltransferase-like

GO: NA

KEGG:

id description
K00587 ICMT, STE14; protein-S-isoprenylcysteine O-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615735.2 False 3565 mRNA 0.43 5 42094188 42099949
XM_021615736.2 True 3539 mRNA 0.43 5 42094488 42099949

Neighbor

gene id symbol gene type direction distance location
LOC110531180 LOC106572301 coding upstream 19846 42065184 ~ 42074342 (+)
LOC110532112 LOC106572249 coding upstream 33593 42041718 ~ 42060595 (+)
LOC110532114 LOC106572334 coding upstream 67117 42021496 ~ 42027071 (+)
LOC110532106 LOC106572250 coding upstream 92820 41967738 ~ 42001368 (+)
LOC110532108 LOC106572252 coding upstream 136823 41935590 ~ 41957365 (+)
LOC110532121 LOC106572248 coding downstream 18442 42118391 ~ 42124869 (+)
LOC118966050 NA coding downstream 60463 42160412 ~ 42179321 (+)
LOC110532122 LOC106572240 coding downstream 109886 42209835 ~ 42236639 (+)
LOC110532123 LOC106572239 coding downstream 137395 42237344 ~ 42246426 (+)
LOC110532129 LOC106572329 coding downstream 325133 42425082 ~ 42431053 (+)
G805303 NA non-coding upstream 5246 42088738 ~ 42088942 (+)
G805083 NA non-coding upstream 56901 42037087 ~ 42037287 (+)
G805081 NA non-coding upstream 58741 42035239 ~ 42035447 (+)
G805065 NA non-coding upstream 128425 41965541 ~ 41965763 (+)
G804948 NA non-coding upstream 300108 41793862 ~ 41794080 (+)
G805312 NA non-coding downstream 501 42100450 ~ 42101445 (+)
G805313 NA non-coding downstream 4284 42104233 ~ 42104622 (+)
G805314 NA non-coding downstream 4875 42104824 ~ 42106636 (+)
G805315 LOC106572244 non-coding downstream 7875 42107824 ~ 42113947 (+)
G805324 NA non-coding downstream 27066 42127015 ~ 42127526 (+)
LOC110532096 LOC106572259 other upstream 658765 41423598 ~ 41452922 (+)
G803728 NA other upstream 1072686 41020936 ~ 41021502 (+)
G803457 NA other upstream 1626186 40467628 ~ 40468002 (+)
G803437 selenok other upstream 1644249 40442896 ~ 40449939 (+)
G805451 NA other downstream 232144 42332093 ~ 42332438 (+)
G805600 NA other downstream 246227 42346176 ~ 42348786 (+)
G807677 NA other downstream 2095766 44195715 ~ 44196041 (+)
G807841 NA other downstream 2342713 44442662 ~ 44453077 (+)
G809685 NA other downstream 4034782 46134731 ~ 46135732 (+)

Expression


Co-expression Network