rnf207b (LOC106572244)


Basic Information

Item Value
gene id rnf207b
gene name LOC106572244
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 42098270 ~ 42114365 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615734.2
CTGACTTGACGTCAGGGCCGGCACTGCATCCCCTCCACGCACACTCAAAGACCCTCCACATATCTGTCATTCCTGCTTGGGACAGCAGCTAAGGCAGCAAGCAATAAGatgTCTGGAGGAATCTTCTGCCCTTTGGAGAACCTATATGACCCAGACAGTGCCAACTGCCACCCCTTGGTATGCCACTTGTGCCATGAGCAGTACGAACACCCCTGTCTACTGGATTGTTACCACACATTCTGCGCCAGTTGTCTGCGTGGCAGGGCTGTGGAAGGCAGACTCTCCTGCCCCCTCTGTGGACAACAGTCCATTGTCAAAGGCCTAAGTGCCTTACCCCAGGAGGACCGCCTGCTCAAATTCCTGGTGGATAACTCTACTGACTGTGAGGAGACTGTGCAGTGTTCAAACTGTGATCTGGAGTGCAAGAAGCAGGATGTGGAAGCAATGCACTATTGCAACACTTGTAGCCAGCCGTTGTGTGGAGCTTGCAGGGAATCAACCCACAAGGCCAAAATGTTTGCCCGCCATGATATTGTCTCCCTTGCCAAACGCACAAAGGAGGTCCACAAAAAGTGTGCCCTCCATGACGAGCTATACATAATGTTCTCCACAGAGAAGAAGTCCATGCTGTGTATCAACTGTTTCAGAGACATGCAAGTGGAGAGCAGAGCACACTGCATTGATATTGAGACAGCATATATGCAAGGCTGTGAAAGGCTGGACCAAGCTGTCATCgcGGTAAAAGAGCTTCAGACGTCTGCCAGGGAAGCCATCATCCTGCTGAAGGCGATGATCAGGGAGGTTCGAGAGAACGTGGATGAGGAGGAGAGCGCTATCAGCACACTGTTCAACAACATGCAGGAAAAACTGGCAGAAAGAAAAAAGATTCTCCTGAAAGCAGCTCAAAGTCAgcatgaggagaaagagagagccttCAAAGAACAGCTGTCTCATCTGGCCGCACTCTTACCCACTCTCCAGGTTCATCTGGTCACTTGCTCAGCCTTTCTAAGTTCAGCCAACAAGTTTGAGTTTCTTGACATGGGATATCAACTGATGGAGAGACTGAAGAAGATTGTCAAACTTCCACACAGACTGAGACCAGCTCAGAGTAGCAAGATCAACACAGAGTATCGGTCCGAGTTTGCTCGTTGCCTTGAGTCTCTGTTACTGCTGGGCCAAAGACGCTCTGTGTCCATTGCTGGGAGTGTGACTGGATTGAGTTTGGGCAATGCCAGCGGACTCCTACAGTCGTCCCTGTCCATGCCCTGCCACTCCCCAGCCATCAGTGACATGTCCCTGGGCTCGTCCGTGGTGCGGAAGCCCACCCCCCACCGCTATTTCAGCACCAAGGTCCTCctggctgaggggggagagacccCCTTCACCGAGCACTGTCGCAACTATGAGACCAGCTACAGGACGCTGCAGATGTCCATTCAGCAGCTGAAGGACCAGGTGCAGGAGACCCACAGGGATCTGACCAAGCACCACTCCCTCATCAAGACAGACACCATGGGAGACATCCTGGATACCTCCgtgcagatggacagacagatctCCTCTGAGTACTCTGCAGTAGAACTCATGAGGGCCATGTTTGAGGAGGTCTGGGAGACAACCTTTCAGAGGGTTGCAAATGAACAGGAAATCTATGAAGCCCAGCTTCATGATCTGACCCAGCTAAGGCAAGAGAACAGTTATCTGACCACCATCGCCAGGCAAATTGGCCCGTATATCCGATCTATCGCCAAGGTGAAGGAACGCCTTGAACCCAGACTGAAAGAGCCTAAGGAGCTGAAAGACGACCGTACAGAGGCCATGCTGAAGATCTATGAGGACACCACTGCGGCCAAAGATACTAAACTAACCATTTCAACAACACTGACAAATGACCTGACCTGTCAGCCTACCACAGATGACAACCACACTCTCAGCAACCTCTCTGATGAGGCTGCCCTCAATAATAATTTCTACTGGCCAGGGAAGCAGAAGACCACAGAGATAGCCATTTGGAAGGAGTTGTCTCCCTAAACAATTGGATAGGGGCATGGGACTTCACCAACAAAGTGCTCACCCTTGACTTACTGGATGTAAATTATATTGAATATAAAATCCAATATTTCCACATTGTGTGTAACAAGGTGTAATGTATGCTATGGTAACACCGTCACTGTGTTCAGGTTGGCTTCTTGTAGTAATTTAAGCATGCATCCATTATCCATATTAGGACTACATTGGCAACAACATGAAAGACAACCTAATGAGGAAGACAATTTTCTTAGGATAAACTTTTGATTTTATTTGACAGGACAATGGTGTTCATTCAATTCAGAAAATGTCAGTAAAGTGAAAAAAAAGTTATCAACCAAGAGTTAGATAAGTACACCCTCTGcatgatacattttttatttacctGTAATAAACTGTAGTATTGTTATACTGTAGTGCAACACAACTGGATTTTTCCACCTTCAGCTCAGCTGTATCATGCTTTGAGCAGCAAACTATCATATGTCTGCAGCCAACTGAATGTGCTCTTATATTTATTAAAACAGAATCTCATCTGTATTCATGTAACACATGACTTTTACAGTGCTCTAGACTGTCCTAATTTCAGAAactaactcacacacactcatcttGCACAACAGTTAAGTGCTTTTGACTGTTCTAATTTCGCAAATTCTCTTTCACTCACAGACATACTCCTCTTGCACTCCATACAGTCTGGGCATACAGAGTGGAGGGCAGAGGCGACCTTTCACCTGAGACAAGCTGCGGTAGTTCAGAAGGAAGCCATGTTGGGTGTAGCTCTCTGAACCCCTTAGCCATAGGAATGCATCTTTTGGTTGGTTTTAATACACAGTGAGCATGAGGAGACAAGCACACAGAACAAATAAATAGATGGAGTGATGATcaagtgggggtagagagagactgtgtgagagcgAATGCATTTTAAAGATGACTATTAGTGAGTGCCCCCATTACTAAAAACCCTATGGAAGAACACCCCTGATTCATAGTCTATACCCAGGGGACATTCAGACTTACAGCAGACTGGAATAGAACAGTGAACGGATTGTCAGTGTTCCTTATGTTTTAAATGACTTACAAAGTAGATGTTTCTGACTTATTACGCCGAACCGTTTGGAGAAATCCGTGAACCAGGCTACGACTTGCTCAGGTTGTCAAATTTGCAAAAGATTTCTGATAGTACAGCTTTTTGATCCTGAGTGGACATGGGATATGTGAATTTAAaatcaggggttggaaccaaagttttctaaaaaaaaataataatttccccCATTCCATTCCACAGTTCCGATCAGCAAAATACATCTCTGAACCGGTCTTAAACCTGTGacattttttaatatattttttttacatttagctcattagaatgacttcagcaatcagtgcagatagagcaggcaagctagttgtttacatgcGTGATGGACAGACCAGTGTAGCCTATGGCGCAAGATGCTACTTAAAATTTACAGGTGGGGGGAGAGCGAGCGGGTTGAGCAGGCTTGAAGCGCTGGCCCTCTTTaagacatgcattatctgaattaggttCACAGAATTTTCCCTAGGAGAGACtttgagctagctagctcacaCGCTTGTGTGAAGAGCAGCACCAGAATTAAACACACAgcttacctttttgtagttaacaAATCCAATCTAAAACTCAACTAGGCCTATAGTATctttaactagcattgaaaaagttaatCCACTTCTCTAATTAAAAAGATCTCTCCCTATCTTCTCATGCTTCTaagttcagtacagtagcctatgcttcagGTGGGGGAGGGGCAGGTAACCTAAACATGCACAGGCAAAGATTTTTAGTTTGCAGGCAGACGCTGGAATAAGTTTCAGTGATAGAGAGGGCTCTGCACATGCGCTTTGTTTCGTTTCTTTTGtgggatgaaaaaaaaaaaaaaaaaaatggc
>TU916499
ACAGGACAATGGTGTTCATTCAATTCAGAAAATGTCAGTAAAGTGAAAAAAAAGTTATCAACCAAGAGTTAGATAAGTACACCCTCTGcatgatacattttttatttacctGTAATAAACTGTAGTATTGTTATACTGTAGTGCAACACAACTGGATTTTTCCACCTTCAGCTCAGCTGTATCATGCTTTGAGCAGCAAACTATCATATGTCTGCAGCCAACTGAATGTGCTCTTATATTTATTAAAACAGAATCTCATCTGTATTCATGTAACACATGACTTTTACAGTGCTCTAGACTGTCCTAATTTCAGAAactaactcacacacactcatcttGCACAACAGTTAAGTGCTTTTGACTGTTCTAATTTCGCAAATTCTCTTTCACTCCATACAGTCTGGGCATACAGAGTGGAGGGCAGAGGCGACCTTTCACCTGAGACAAGCTGCGGTAGTTCAGAAGGAAGCCATGTTGGGTGTAGCTCTCTGAACCCCTTAGCCATAGGAATGCATCTTTTGGTTGGTTTTAATACACAGTGAGCATGAGGAGACAAGCACACAGAACAAATAAATAGATGGAGTGATGATcaagtgggggtagagagagactgtgtgagagcgAATGCATTTTAAAGATGACTATTAGTCTATACCCAGGGGACATTCAGACTTACAGCAGACTGGAATAGAACAGTGAACGGATTGTCAGTGTTCCTTATGTTTTAAATGACTTACAAAGTAGATGTTTCTGACTTATTACGCCGAACCGTTTGGAGAAATCCGTGAACCAGGCTACGACTTGCTCAGGTTGTCAAATTTGCAAAAGATTTCTGATAGTACAGCTTTTTGATCCTGAGTGGACATGGGATATGTGAATTTAAaatcaggggttggaaccaaagttttctaaaaaaaaataataatttccccCATTCCATTCCACAGTTCCGATCAGCAAAATACATCTCTGAACCGGTCTTAAACCTGTGacattttttaatatattttttttacatttagctcattagaatgacttcagcaatcagtgcagatagagcaggcaagctagttgtttacatgcGTGATGGACAGACCAGTGTAGCCTATGGCGCAAGATGCTACTTAAAATTTACAGGTGGGGGGAGAGCGAGCGGGTTGAGCAGGCTTGAAGCGCTGGCCCTCTTTaagacatgcattatctgaattaggttCACAGAATTTTCCCTAGGAGAGACtttgagctagctagctcacaCGCTTGTGTGAAGAGCAGCACCAGAATTAAACACACAgcttacctttttgtagttaacaAATCCAATCTAAAACTCAACTAGGCCTATAGTATctttaactagcattgaaaaagttaatCCACTTCTCTAATTAAAAAGATCTCTCCCTATCTTCTCATGCTTCTaagttcagtacagtagcctatgcttcagGTGGGGGAGGGGCAGGTAACCTAAACATGCACAGGCAAAGATTTTTAGTTTGCAGGCAGACGCTGGAATAAGTTTCAGTGATAGAGAGGGCTCTGCACATGCGC
>TU916501
GGAAAAACTGGCAGAAAGAAAAAAGATTCTCCTGAAAGCAGCTCAAAGTCAgcatgaggagaaagagagagccttCAAAGAACAGCTGTCTCATCTGGCCGCACTCTTACCCACTCTCCAGGTAATGTCCTGTCT

Function

NR:

description
PREDICTED: RING finger protein 207-like isoform X2

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615734.2 False 3983 mRNA 0.46 18 42098270 42114365
TU916499 False 1554 lncRNA 0.40 3 42098318 42099945
TU916501 True 135 lncRNA 0.47 2 42102953 42103983

Neighbor

gene id symbol gene type direction distance location
LOC110533012 LOC106572332 coding downstream 10968 42085331 ~ 42087302 (-)
LOC110532116 LOC106572333 coding downstream 21421 42075577 ~ 42076849 (-)
LOC110532109 NA coding downstream 103759 41992351 ~ 41994511 (-)
LOC110532110 NA coding downstream 129317 41955175 ~ 41968953 (-)
LOC110532104 LOC106572254 coding downstream 341478 41693922 ~ 41756792 (-)
LOC110532119 LOC106572245 coding upstream 10890 42125255 ~ 42141613 (-)
LOC110532120 LOC106572241 coding upstream 40720 42155085 ~ 42160574 (-)
LOC110532125 vps13d coding upstream 148873 42263238 ~ 42289818 (-)
LOC118966051 NA coding upstream 183586 42297951 ~ 42299962 (-)
LOC110532126 LOC106572238 coding upstream 199123 42313488 ~ 42341574 (-)
G805256 NA non-coding downstream 58727 42039116 ~ 42039543 (-)
G805254 NA non-coding downstream 61259 42036802 ~ 42037011 (-)
G805253 LOC107745311 non-coding downstream 61900 42035895 ~ 42036370 (-)
G805246 NA non-coding downstream 71235 42025273 ~ 42027035 (-)
G805160 NA non-coding downstream 94427 42000160 ~ 42003843 (-)
G805464 NA non-coding upstream 3140 42117505 ~ 42117752 (-)
G805467 LOC102779685 non-coding upstream 4150 42118515 ~ 42125165 (-)
G805481 NA non-coding upstream 30172 42144537 ~ 42144786 (-)
G805482 NA non-coding upstream 30713 42145078 ~ 42145395 (-)
G805483 NA non-coding upstream 31535 42145900 ~ 42146216 (-)
G804543 LOC106572259 other downstream 660299 41437030 ~ 41437971 (-)
G804255 NA other downstream 1113025 40984482 ~ 40985245 (-)
wdr6 wdr6 other downstream 1182296 40904738 ~ 40916073 (-)
G804307 NA other downstream 1185912 40862589 ~ 40912358 (-)
G804137 LOC106572278 other downstream 1524320 40571014 ~ 40573950 (-)
G806724 LOC106572208 other upstream 1217565 43331930 ~ 43339589 (-)
prdm16 prdm16 other upstream 1826201 43781726 ~ 44015554 (-)
tafa5l LOC106572193 other upstream 2134433 44247091 ~ 44292397 (-)
G807941 NA other upstream 2247051 44361416 ~ 44362166 (-)

Expression


Co-expression Network