LOC110532119 (LOC106572245)


Basic Information

Item Value
gene id LOC110532119
gene name LOC106572245
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 42125255 ~ 42141613 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615737.2
atcctctgttgcaacactcacaactgagttccaaacagcctctggaagcaaagtcagcacaagaactgttcgtcgggagcttcgtgaaatgggtttccatggccgagcagccgctcacaagcctaagatcaccaagtCAGGCCTTCAAGCAGTGACTGTCGCTGACGATATCAAGGAAAAAGTAAAACTTGACTTACCTAAAGTCAAAGGTCAACTACTCATTTTCGGCGCCACCAACTGGGATCTCATCGGAAGGAAAGAGGTGCCAAAAGCACAAGCAGCCTTCAGGAACCTAGGCCAGAACTTGTGGGGTCCTCACCGCTACGGCAGCATGAGTGACGTGCAGGTCAGCAGTGTGGTGTCTGGGCCCTGTGCTGCCCACAGCCTCCTAATCACCACTGAGGGCAAGCTCTGGAGCTGGGGTCGAAATGAAAAGGGTCAGCTGGGTCACGGGGACACCAAACGCCTGGAGGCCCCAAAACTGATTGAGGCCCTCGCAGACGAAGTGGTGGTGGCTGCAGCCTGTGGTCGCAACCACACCCTGGCATTGACCGAGGGTGGCACCGCCTACTCGTTTGGAGAGAACAAACTGGGCCAGCTGGGCCAGGGCAACCAAACAGATGCAGTCCTCAGTCCAGCCCTGATCCAGTACAATGGGCAGCCCTTGGTCAAGGTGGCGTGTGGGGCAGAGTTCAGCATGGTGGTGGACTGCAAAGGAAACCTCTTCTCGTTCGGTTGCCCAGAGTATGGCCAGCTAGGACACAACTCTGACGGCAAGTTCATTGCCCGCGCCCAGCGCATCGAGTTTGACTGTGAGACCATTGCACGCCGCGTGGCCATCTTCATCGAGAAGAGTAAGGACAGCCAGGTGACGCCTGTACCTAACGTGGTGGTCCGAGACGTCGCCTGCGGAGGCAATCACACGCTGATATTGGACTCCCAGAAGCGGGTGTTTTCCTGGGGCTTTGGTGGTTATGGACGGCTGGGTCACACGGAGCAGAAGGACGAGATGGTGCCCAGACTGGTGAAGCTCTTCGACTTCCCCGGGCGCGGGGCTTCCCAAATCTACACTGGCTATCAGTGCTCCTTCGCTGTAAATGAGATGGGAGGGCTGTTTTTCTGGGGGGTCACCAATACCTCGCGTGAGTCTACCATGTACCCCAAGGCTGTTCAGGACCTGTGTGGCTGGAAGGTCCGCAGTCTGGCGTGCGGGAAAAGCAGTATAGTTATCGCTGCAGACGACAGCACCATCAGCTGGGGACCCTCCCCCACCTTTGGAGAACTGGGATACGGAGACAACAAGGCCAAGTCCTCCACTACTGCTCAGGAGGTGAAGACCCTGGATGGAGTTTACACTGAACAGGTGGTGATGGGATACGCACACTGCCTGGTCATCGCCAGACAGGATACTCCACAGGAACAAGAGATGCTCAAGAAGCTGCCAGAGTACAACCCACGCACGCTCTGATGGGGCACCATCCAGCCACCTTACCATTTGTCAACAGATTCTCTCCAGAATGCATCTCCCCTTTAGGTCACCTTTGTAAGGCTTGATGGATGGCTGGGGAGGGTGGGCTCTTGTATGTATGCGAACACAAACAAGTCAGTTCTTTTTGTGTTTGTTCCCAAAGACCAATTACATTTTCTTTGTTCATGAAGTCCATGGCAGTATTACTTTTTGTCAGGTCGATCTGTATGCATTGTCAGAACACAATCGGGATCTGAGACATTGTGCCATCAAGTTGATGCTCTCCGGCCATTGACTTCTGTTAACATTCTTTGGTTAATCTCTTCACTTGTACGATTAAATGTTGGTGCCAAGGATGTGCAACTGTCTCTCAGGCCAGTATCTGCTTGTCATTCCAGACTTTTTTCACCTCAGTGACTCCTTTTAGCCTGGGAATCCAGGTGTGGGCACTGCAATCTTGGCAATGAGAATGTGGTTTTGCGACTCTCTTTTAGTCCAAATGGTTAACAGGGTGTGGTTATCCTAGTTTTAAATCAAGACTGgttgtttttcttaatttgttttggtcAAAGGCCCGCATGTTTTTTACATTTCAAACGTGGAAATGGTAAAGGTTAATTAAATTGTTTGATTTTGTTCAGTCTGTTCTGACATTGCCTCTCTCCTGCCCCAAGAGGGGTTAAAAGCTTTTGTTGGCCAGTACATCTTGTCATCACTGCTGTAAACAGCCTGGTTTTGACCACTGTATGTAGCAGTTAGTATGCATCCATCTGCTGACCAATCATCCACCGTAATTTGGGTGAGCTAGGAGTAGATGACTGGGATCGTACAGATGGGCAAGTTTCTTGTACATACCGATGACGTGCACTCTATGGGTTGATTTCGGGCCACACTTCTAGCATCAATCTGATTTAACCAATTCTGACAAGCAAATTTCCCCATTTACCAATGAGCATATCACACCTTACACAGGTTCTGAGCTGCCAAATACTTGAGATTCATTTACAGATGGTTATGCTGGATTAACATTGTGGAAGGTTGACTGTTTTGTCTGCATTTTGGGAGTTATGGCTAGCTGAAtctagtgccttcagaaagtattcattcctgttcacagttgtttcagcctgaatgtaaaatgtactacattgttttttttacactTGTATacaaacaccccataatgtcagaaTTGTTTAAATTTGTACCAATTAaatagctgaaatgtcttga
>XM_036988034.1
catcctctgttgcaacactcacaactgagttccaaacagcctctggaagcaaagtcagcacaagaactgttcgtcgggagcttcgtgaaatgggtttccatggccgagcagccgctcacaagcctaagatcaccaagtCAGGCCTTCAAGCAGTGACTGTCGCTGACGATATCAAGGAAAAAGTAAAACTTGACTTACCTAAAGTCAAAGGTCAACTACTCATTTTCGGCGCCACCAACTGGGATCTCATCGGAAGGAAAGAGGTGCCAAAAGCACAAGCCTTCAGGAACCTAGGCCAGAACTTGTGGGGTCCTCACCGCTACGGCAGCATGAGTGACGTGCAGGTCAGCAGTGTGGTGTCTGGGCCCTGTGCTGCCCACAGCCTCCTAATCACCACTGAGGGCAAGCTCTGGAGCTGGGGTCGAAATGAAAAGGGTCAGCTGGGTCACGGGGACACCAAACGCCTGGAGGCCCCAAAACTGATTGAGGCCCTCGCAGACGAAGTGGTGGTGGCTGCAGCCTGTGGTCGCAACCACACCCTGGCATTGACCGAGGGTGGCACCGCCTACTCGTTTGGAGAGAACAAACTGGGCCAGCTGGGCCAGGGCAACCAAACAGATGCAGTCCTCAGTCCAGCCCTGATCCAGTACAATGGGCAGCCCTTGGTCAAGGTGGCGTGTGGGGCAGAGTTCAGCATGGTGGTGGACTGCAAAGGAAACCTCTTCTCGTTCGGTTGCCCAGAGTATGGCCAGCTAGGACACAACTCTGACGGCAAGTTCATTGCCCGCGCCCAGCGCATCGAGTTTGACTGTGAGACCATTGCACGCCGCGTGGCCATCTTCATCGAGAAGAGTAAGGACAGCCAGGTGACGCCTGTACCTAACGTGGTGGTCCGAGACGTCGCCTGCGGAGGCAATCACACGCTGATATTGGACTCCCAGAAGCGGGTGTTTTCCTGGGGCTTTGGTGGTTATGGACGGCTGGGTCACACGGAGCAGAAGGACGAGATGGTGCCCAGACTGGTGAAGCTCTTCGACTTCCCCGGGCGCGGGGCTTCCCAAATCTACACTGGCTATCAGTGCTCCTTCGCTGTAAATGAGATGGGAGGGCTGTTTTTCTGGGGGGTCACCAATACCTCGCGTGAGTCTACCATGTACCCCAAGGCTGTTCAGGACCTGTGTGGCTGGAAGGTCCGCAGTCTGGCGTGCGGGAAAAGCAGTATAGTTATCGCTGCAGACGACAGCACCATCAGCTGGGGACCCTCCCCCACCTTTGGAGAACTGGGATACGGAGACAACAAGGCCAAGTCCTCCACTACTGCTCAGGAGGTGAAGACCCTGGATGGAGTTTACACTGAACAGGTGGTGATGGGATACGCACACTGCCTGGTCATCGCCAGACAGGATACTCCACAGGAACAAGAGATGCTCAAGAAGCTGCCAGAGTACAACCCACGCACGCTCTGATGGGGCACCATCCAGCCACCTTACCATTTGTCAACAGATTCTCTCCAGAATGCATCTCCCCTTTAGGTCACCTTTGTAAGGCTTGATGGATGGCTGGGGAGGGTGGGCTCTTGTATGTATGCGAACACAAACAAGTCAGTTCTTTTTGTGTTTGTTCCCAAAGACCAATTACATTTTCTTTGTTCATGAAGTCCATGGCAGTATTACTTTTTGTCAGGTCGATCTGTATGCATTGTCAGAACACAATCGGGATCTGAGACATTGTGCCATCAAGTTGATGCTCTCCGGCCATTGACTTCTGTTAACATTCTTTGGTTAATCTCTTCACTTGTACGATTAAATGTTGGTGCCAAGGATGTGCAACTGTCTCTCAGGCCAGTATCTGCTTGTCATTCCAGACTTTTTTCACCTCAGTGACTCCTTTTAGCCTGGGAATCCAGGTGTGGGCACTGCAATCTTGGCAATGAGAATGTGGTTTTGCGACTCTCTTTTAGTCCAAATGGTTAACAGGGTGTGGTTATCCTAGTTTTAAATCAAGACTGgttgtttttcttaatttgttttggtcAAAGGCCCGCATGTTTTTTACATTTCAAACGTGGAAATGGTAAAGGTTAATTAAATTGTTTGATTTTGTTCAGTCTGTTCTGACATTGCCTCTCTCCTGCCCCAAGAGGGGTTAAAAGCTTTTGTTGGCCAGTACATCTTGTCATCACTGCTGTAAACAGCCTGGTTTTGACCACTGTATGTAGCAGTTAGTATGCATCCATCTGCTGACCAATCATCCACCGTAATTTGGGTGAGCTAGGAGTAGATGACTGGGATCGTACAGATGGGCAAGTTTCTTGTACATACCGATGACGTGCACTCTATGGGTTGATTTCGGGCCACACTTCTAGCATCAATCTGATTTAACCAATTCTGACAAGCAAATTTCCCCATTTACCAATGAGCATATCACACCTTACACAGGTTCTGAGCTGCCAAATACTTGAGATTCATTTACAGATGGTTATGCTGGATTAACATTGTGGAAGGTTGACTGTTTTGTCTGCATTTTGGGAGTTATGGCTAGCTGAAtctagtgccttcagaaagtattcattcctgttcacagttgtttcagcctgaatgtaaaatgtactacattgttttttttacactTGTATacaaacaccccataatgtcagaaTTGTTTAAATTTGTACCAATTAaatagctgaaatgtcttga
>TU916512
AGCTGGGTCACGGGGACACCAAACGCCTGGAGGCCCCAAAACTGATTGAGGCCCTCGCAGACGAAGTGGTGGTGGCTGCAGCCTGTGGTCGCAACCACACCCTGGCATTGACCGAGGGTGGCACCGCCTACTCGTTTGGAGAGAACAAACTGGGCCAGCTGGGCCAGGGCAACCAAACAGATGCAGTCCTCAGTCCAGCCCTGATCCAGTACAATGGGCAGCCCTTGGTCAAGGTGGCGTGTGGGGCAGAGTTCAGCATGGTGGTGGACTGCAAAGGAAACCTCTTCTCGTTCGGTTGCCCAGAGTATGGCCAGCTAGGACACAACTCTGACGGCAAGTTCATTGCCCGCGCCCAGCGCATCGAGTTTGACTGTGAGACCATTGCACGCCGCGTGGCCATCTTCATCGAGAAGAGTAAGGACAGCCAGGTGACGCCTGTACCTAACGTGGTGGTCCGAGACGTCGCCTGCGGAGGCAATCACACGCTGATATTGGACTCCCAGAAGCGGGTGTTTTCCTGGGGCTTTGGTGGTTATGGACGGCTGGGTCACACGGAGCAGAAGGACGAGATGGTGCCCAGACTGGTGAAGCTCTTCGACTTCCCCGGGCGCGGGGCTTCCCAAATCTACACTGGCTATCAGTGCTCCTTCGCTGTAAATGAGATGGGAGGGCTGTTTTTCTGGGGGGTCACCAATACCTCGCGTGAGTCTACCATGTACCCCAAGGCTGTT

Function

NR:

description
RCC2 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615737.2 False 2701 mRNA 0.49 10 42125255 42141612
XM_036988034.1 False 2699 mRNA 0.49 10 42125255 42141613
TU916512 True 731 TUCP 0.59 5 42127852 42139326

Neighbor

gene id symbol gene type direction distance location
rnf207b LOC106572244 coding downstream 10890 42098270 ~ 42114365 (-)
LOC110533012 LOC106572332 coding downstream 37953 42085331 ~ 42087302 (-)
LOC110532116 LOC106572333 coding downstream 48406 42075577 ~ 42076849 (-)
LOC110532109 NA coding downstream 130744 41992351 ~ 41994511 (-)
LOC110532110 NA coding downstream 156302 41955175 ~ 41968953 (-)
LOC110532120 LOC106572241 coding upstream 13472 42155085 ~ 42160574 (-)
LOC110532125 vps13d coding upstream 121625 42263238 ~ 42289818 (-)
LOC118966051 NA coding upstream 156338 42297951 ~ 42299962 (-)
LOC110532126 LOC106572238 coding upstream 171875 42313488 ~ 42341574 (-)
LOC110532127 LOC106572237 coding upstream 204269 42345882 ~ 42404462 (-)
G805467 LOC102779685 non-coding downstream 90 42118515 ~ 42125165 (-)
G805464 NA non-coding downstream 7503 42117505 ~ 42117752 (-)
G805256 NA non-coding downstream 85712 42039116 ~ 42039543 (-)
G805254 NA non-coding downstream 88244 42036802 ~ 42037011 (-)
G805481 NA non-coding upstream 2924 42144537 ~ 42144786 (-)
G805482 NA non-coding upstream 3465 42145078 ~ 42145395 (-)
G805483 NA non-coding upstream 4287 42145900 ~ 42146216 (-)
G805487 NA non-coding upstream 8190 42149803 ~ 42150002 (-)
G805538 NA non-coding upstream 95277 42236890 ~ 42237230 (-)
G804543 LOC106572259 other downstream 687284 41437030 ~ 41437971 (-)
G804255 NA other downstream 1140010 40984482 ~ 40985245 (-)
wdr6 wdr6 other downstream 1209281 40904738 ~ 40916073 (-)
G804307 NA other downstream 1212897 40862589 ~ 40912358 (-)
G804137 LOC106572278 other downstream 1551305 40571014 ~ 40573950 (-)
G806724 LOC106572208 other upstream 1190317 43331930 ~ 43339589 (-)
prdm16 prdm16 other upstream 1798953 43781726 ~ 44015554 (-)
tafa5l LOC106572193 other upstream 2107185 44247091 ~ 44292397 (-)
G807941 NA other upstream 2219803 44361416 ~ 44362166 (-)
G808375 NA other upstream 2492946 44634559 ~ 44636846 (-)

Expression


Co-expression Network