LOC110532120 (LOC106572241)


Basic Information

Item Value
gene id LOC110532120
gene name LOC106572241
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 42155085 ~ 42160574 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615738.2
TTAATTATAAATGTAGGCAGTACTCACGTGGTTTCATCGAGCCGGAGACTGCAGATTCTTTTGTTCAAAAAAATCCATCAAAAAAAACGAGGAAGACGGACAGACACTAGAGAATCAGGAAATCCTTCTGCAGACGTTAATTAGTCACCGAATTAGAAGTCAAATAATCGGAACTCGAGAGGTTTAGCAACTTTTAGTTGGAGAAAGCGAAAGTTTTTCATCGgtgtattagctagctaacgttagttaacgTTACCCAAGATATTTTGACAAACATGCCACGCAAGAAGGTAACAGAAGTCTCAGGGAATGGTGGGATCAAGAGGAAGAGGGCAGGAGGCAAAAAGAAGGAACGGGAGTTCAGCAGTGATGATGAGTTTGACGATTATGAAGAGCAGGAGAACACAAAGAAACCTGGCAAGCCTGCTACAAAGTCAGGCCTTCAACCAGTCACTGTCGCAGACGATATCAAGGAAAAAATAAAACTTGACTTACCTAAAGTCAAAGGTCAACTACTCATTTTCGGCGCCACCAACTGGGATCTCATCGGAAGGAAAGAGGTGCCAAAAGCACAAGCGGCCTTCAGGAACCTAGGCCAGAACTTGTGGGGTCCTCACCGCTACGGCAGCATGAGTGACGTGCAGGTCAGCAGTGTGGTGTCTGGGCCCTGTGCTGCCCACAGCCTCCTAATCACTACTGAGGGCAAGCTCTGGAGCTGGGGTCGAAATGAAAAGGGTCAGCTGGGTCACGGGGACACCAAGCGCCTGGAGGCCCCAAAGCTGATTGAGGCCCTCGCAGACGAAGTGGTGGTGGCTGCAGCCTGTGGACGCAACCACACCCTGGCATTGACAGAGGGTGGCACCGCCTACTCGTTTGGAGAGAACAAACTGGGCCAGCTGGGCCAGGGCAACCAAACAGATGCAGTCCTCAGTCCAGCCCTGATCCAGTACAATGGGCAGCCCTTGGTCAAGGTGGCGTGTGGGGCAGAGTTCAGCATGGTGGTGGACTGCAAAGGAAACCTCTACTCGTTCGGGTGCCCAGAGTATGGCCAGCTAGGACACAACTCTGACGGCAAGTTCATTGCCCGCGCCCAGCGCATCGAGTTTGACTGTGAGACCATTGCACGCCGCGTGGCCATCTTCATCGAGAAGAGTAAGGACGGCCAGGTGACGCCTGTACCTAACGTGGTGGTCCGAGACGTCGCCTGCGGAGGCAATCACACGctgATATTGGACTCCCAGAAGCGGGTGTTTTCCTGGGGCTTTGGTGGTTATGGACGGCTGGGTCACACGGAGCAGAAGGACGAGATGGTTCCCAGATTGGTGAAGCTCTTCGACTTCCCCGGGCGCGGGGCATCCCAAATCTACACTGGCTATCAGTGCTCCTTCGCTATAAATGAGATGGGAGGGCTGTTTTTCTGGGGGGTCACCAATACCTCGCGGGAGTCTACCATGTACCCCAAGGCTGTGCAGGACCTGTGTGGCTGGAAGGTCCGCAGTCTGGCGTGCGGGAAAAGCAGTATAGTTATTGCTGCAGACGACAGCACCATCAGCTGGGGACCCTCCCCCACCTTTGGAGAACTGGGATACGGAGACAACAAGGCCAAGTCCTCCACTACTGCTCAGGAGGTGAAGACCCTGGATGGAGTTTACACTGAACAGGTGGTGATGGGATACGCACACTGCCTGGTCATCGCCAGACAGGATACTCCACAGGAACAAGACAAGCTCAAGAAGCTGCCAGAGTACAACCCACGCACGCTCTGATAGGGCACCATCCAGCTgcctcacttttttttttatttttttttactccagAGACAACTGATTCTCTCCAGAATGCACCCGCCCTTTAGGTCACCTTTGTAAGTCATGATGGATGGCTGGGGAGGGTGGGCTCTCATGAATATGTATGCATACACTTTGAAAAACAAGTCGGGTCTAGGCCATAGATTCAGAGGTTAAATGAACAAAAATGTGCCACAACTAAGACTGAAAGAAATCTACTCTGGACAGAATACATCCTGCTCACAACGCCTGTCAGATTTCTACAGCTGGATAGAGGAACTCTACCACTCAACTCTCCCAAGCACATTATTCCTCTCTGGGTTCTACTCCTACCCCAAAATCCATGCAACTCCACTGAAGCGTTCACTATATTTTCATGAAGTCTTTTTTGCTGTTGTTATTATCCTTCTGTTGAACTGATCAATGTCCTCTCCCTCACCATAACAGGTGCTACATCAGTCCTTCATTGGGCAGATTCATTTCCAAGTGAGGGATCACTTCAAGACCAACACTTCATGCCTTTTGAAATTGTTGTTTGGGGGTTTGGAGTAAATGTGTTTGTTCCCAAAGACCAATTGCTGAATTTAGTTTAATTTGTTCATGAAGTCCGTGGCAGTATTACTCTTTGTCAGGTCGATCTGTATGCATTGTCAAAACACAATGGGGATCTGAGACATGTGCCACCAAGTTGATGCTCTCCAGCCATTGACTTGTGTTTCATTCCTTGGTTTCTCTTCACTTGTATGATTAAATGTTGGCGTTGAGGATGCGCAACTGTCCCTCAAAGGCCAGTGTCTGCTTGTTGTCATTCCTGATGTTTTTTTTCTTAGTGACTCCTTTTTTTAGCCTGGGAAACCAGCTGTGGACACTGCAGTCTTGGGAATGAAAACCAGCATGAATGTGATTTTGGGAGGACTTGAGTTGTGTGCCTCTTTTAGTGTGAAACTACACTTTCTGCACTGTTAAAATGATTTTTCATAAAC

Function

NR:

description
protein RCC2 homolog

GO:

id name namespace
GO:0005730 nucleolus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615738.2 True 2770 mRNA 0.49 11 42155085 42160574

Neighbor

gene id symbol gene type direction distance location
LOC110532119 LOC106572245 coding downstream 13472 42125255 ~ 42141613 (-)
rnf207b LOC106572244 coding downstream 40720 42098270 ~ 42114365 (-)
LOC110533012 LOC106572332 coding downstream 67783 42085331 ~ 42087302 (-)
LOC110532116 LOC106572333 coding downstream 78236 42075577 ~ 42076849 (-)
LOC110532109 NA coding downstream 160574 41992351 ~ 41994511 (-)
LOC110532125 vps13d coding upstream 102664 42263238 ~ 42289818 (-)
LOC118966051 NA coding upstream 137377 42297951 ~ 42299962 (-)
LOC110532126 LOC106572238 coding upstream 152914 42313488 ~ 42341574 (-)
LOC110532127 LOC106572237 coding upstream 185308 42345882 ~ 42404462 (-)
LOC110532130 LOC106572235 coding upstream 276193 42436767 ~ 42484817 (-)
G805487 NA non-coding downstream 5083 42149803 ~ 42150002 (-)
G805483 NA non-coding downstream 8869 42145900 ~ 42146216 (-)
G805482 NA non-coding downstream 9690 42145078 ~ 42145395 (-)
G805481 NA non-coding downstream 10299 42144537 ~ 42144786 (-)
G805467 LOC102779685 non-coding downstream 29920 42118515 ~ 42125165 (-)
G805538 NA non-coding upstream 76316 42236890 ~ 42237230 (-)
G805550 NA non-coding upstream 96978 42257552 ~ 42269052 (-)
G805569 NA non-coding upstream 126994 42287568 ~ 42287836 (-)
G805553 NA non-coding upstream 129252 42289826 ~ 42290153 (-)
G805571 NA non-coding upstream 132378 42292952 ~ 42293579 (-)
G804543 LOC106572259 other downstream 717114 41437030 ~ 41437971 (-)
G804255 NA other downstream 1169840 40984482 ~ 40985245 (-)
wdr6 wdr6 other downstream 1239111 40904738 ~ 40916073 (-)
G804307 NA other downstream 1242727 40862589 ~ 40912358 (-)
G806724 LOC106572208 other upstream 1171356 43331930 ~ 43339589 (-)
prdm16 prdm16 other upstream 1779992 43781726 ~ 44015554 (-)
tafa5l LOC106572193 other upstream 2088224 44247091 ~ 44292397 (-)
G807941 NA other upstream 2200842 44361416 ~ 44362166 (-)
G808375 NA other upstream 2473985 44634559 ~ 44636846 (-)

Expression


Co-expression Network