LOC118966050


Basic Information

Item Value
gene id LOC118966050
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 42160412 ~ 42179321 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053251.1
TTGACTTCTAATTCGGTGACTAATTAACGTCTGCAGAAGGATTTCCTGATTCTCTAGTGTCTGTCCGTCTTCCTCGTTTTTTTTGATGGATTTTTTTGAACAAAAGAATCTGCAGTCTCCGGCTCGATGAAACCACGAAACCTCCCCCACGCTTGATGTAGGAGGTCCAGGTGATGCAGCAAGTTCTGAAAATGAAAACGTGTCTAGTCCGGAGGGCCTGCAAAGTCCAGATGGTATGGCCTGCACAGACAGCCCACCTGGCCCCGATGACGTCATCACAACCAATCCGACCAGCCGCTATGACATCCTGAATAGCCCGACCTGCCCTACATGATCAGTCCAGACGTCATTTTCAGGACCAGTCGTCCAGAGGTCAACTATGATGACGTGCCCTGTGAGAGCCTCCTCTCTCCTGTGGAAGTTGTGTGTCAGATTGCATCTATGAGAACGTTCAGAGGCAAGTGGACCATCATGGCACCAACAACAGCTGGAGCGGCAGTGAGTTTGAGAGCTATGATGAGCAGTCAGACAGCGGGACCAAAGTCAAGACCCTGCATGGCCCACAGCAGTAGTAAGATAGGGAGGGCTCTTATTTTGTATACTCAGCTGCTTTTGCAATCtctatatttttttgtatgtGTTATTCAGACCTTGATACTATACATAACTTGGTGCTACAATTATTTAATGACACCCAAGGATGTCTGTTGCGTCAATGTAAGCATTGTTGTTTTTTGAATGGAGATGTATTGAGGACTCTAGTGCCCaaaagcctgttttagcatgggctAAATTGAGAACTTTCATTGAGaactttcaccattttgaagtagtcaactgggtagaacttcctatgggttaaggaaggatcacataattccatccggGTCATCAGGATGGATCAACCAATGAATTATACtcgtgagcaaacattccataactgcaggtggcagtaaatcgccaatcttggctttatacctgttcaaacaacacactacAGGTGGCAGTACGTACCCTTTCAGCTAACTACTTCAAAATGGTACTGCTTGTGCGCTCGCACACAACATAATGGGACAGTTACAATATTGCAATCTCTGTACATctctgtcagtggaggctgctgaggggaggacggctcataataatggctggaatggagtgtttgataccgttccattctCTCCATTCCGGACaatattatgagtcgtcctccctctcagcagcctccactggtctctatggtatgttgctatgtctttttCAAAATATAGCAGTACTATGTAGGCTCAAATATCATATGAAAAGCATATTATGAAGTCAAATGCACATCACTTTTCAATCCCAAATTGTAACCAATAAAGGTTTTCGTTGTAGTA
>XR_005053252.1
GCTGTGACATCAATTACTGCTCAAATGACTTTTTATGTTGGTCTGATGCTGTATTCTCTCCTTAATGAACCATCCATGGAAGCAATGTCACTCCCAGATGTTTTGATTCCCATATTTGGTGTCAATGTTTCAGCCGCTCTGAGCTGGGAGTGTCAGGACAGACCGAGAGCTCCGGGAGAAGAAATAACATTTATGAAAGAAACCTCCCCCACGCTTGATGTAGGAGGTCCAGGTGATGCAGCAAGTTCTGAAAATGAAAACGTGTCTAGTCCGGAGGGCCTGCAAAGTCCAGATGGTATGGCCTGCACAGACAGCCCACCTGGCCCCGATGACGTCATCACAACCAATCCGACCAGCCGCTATGACATCCTGAATAGCCCGACCTGCCCTACATGATCAGTCCAGACGTCATTTTCAGGACCAGTCGTCCAGAGGTCAACTATGATGACGTGCCCTGTGAGAGCCTCCTCTCTCCTGTGGAAGTTGTGTGTCAGATTGCATCTATGAGAACGTTCAGAGGCAAGTGGACCATCATGGCACCAACAACAGCTGGAGCGGCAGTGAGTTTGAGAGCTATGATGAGCAGTCAGACAGCGGGACCAAAGTCAAGACCCTGCATGGCCCACAGCAGTAGTAAGATAGGGAGGGCTCTTATTTTGTATACTCAGCTGCTTTTGCAATCtctatatttttttgtatgtGTTATTCAGACCTTGATACTATACATAACTTGGTGCTACAATTATTTAATGACACCCAAGGATGTCTGTTGCGTCAATGTAAGCATTGTTGTTTTTTGAATGGAGATGTATTGAGGACTCTAGTGCCCaaaagcctgttttagcatgggctAAATTGAGAACTTTCATTGAGaactttcaccattttgaagtagtcaactgggtagaacttcctatgggttaaggaaggatcacataattccatccggGTCATCAGGATGGATCAACCAATGAATTATACtcgtgagcaaacattccataactgcaggtggcagtaaatcgccaatcttggctttatacctgttcaaacaacacactacAGGTGGCAGTACGTACCCTTTCAGCTAACTACTTCAAAATGGTACTGCTTGTGCGCTCGCACACAACATAATGGGACAGTTACAATATTGCAATCTCTGTACATctctgtcagtggaggctgctgaggggaggacggctcataataatggctggaatggagtgtttgataccgttccattctCTCCATTCCGGACaatattatgagtcgtcctccctctcagcagcctccactggtctctatggtatgttgctatgtctttttCAAAATATAGCAGTACTATGTAGGCTCAAATATCATATGAAAAGCATATTATGAAGTCAAATGCACATCACTTTTCAATCCCAAATTGTAACCAATAAAGGTTTTCGTTGTAGTA

Function

NR:

description
PREDICTED: rho guanine nucleotide exchange factor 10-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053251.1 False 1376 mRNA 0.44 3 42160412 42179321
XR_005053252.1 True 1438 mRNA 0.45 3 42174848 42179321

Neighbor

gene id symbol gene type direction distance location
LOC110532121 LOC106572248 coding upstream 35543 42118391 ~ 42124869 (+)
LOC110532118 LOC106566808 coding upstream 60463 42094188 ~ 42099949 (+)
LOC110531180 LOC106572301 coding upstream 86070 42065184 ~ 42074342 (+)
LOC110532112 LOC106572249 coding upstream 99817 42041718 ~ 42060595 (+)
LOC110532114 LOC106572334 coding upstream 133341 42021496 ~ 42027071 (+)
LOC110532122 LOC106572240 coding downstream 30514 42209835 ~ 42236639 (+)
LOC110532123 LOC106572239 coding downstream 58023 42237344 ~ 42246426 (+)
LOC110532129 LOC106572329 coding downstream 245761 42425082 ~ 42431053 (+)
glut1b LOC106572233 coding downstream 337825 42496861 ~ 42529048 (+)
trappc6b trappc6b coding downstream 361700 42541021 ~ 42546531 (+)
G805348 NA non-coding upstream 5913 42154291 ~ 42154499 (+)
G805344 NA non-coding upstream 8873 42151295 ~ 42151539 (+)
G805340 NA non-coding upstream 13737 42146468 ~ 42146675 (+)
G805339 NA non-coding upstream 14495 42145622 ~ 42145917 (+)
G805336 NA non-coding upstream 18539 42141437 ~ 42141873 (+)
G805422 NA non-coding downstream 109969 42289290 ~ 42289548 (+)
G805423 NA non-coding downstream 110233 42289554 ~ 42291000 (+)
G805601 NA non-coding downstream 166280 42345601 ~ 42345839 (+)
G805638 NA non-coding downstream 219324 42398645 ~ 42398855 (+)
G805640 NA non-coding downstream 221993 42401314 ~ 42401631 (+)
LOC110532096 LOC106572259 other upstream 724989 41423598 ~ 41452922 (+)
G803728 NA other upstream 1138910 41020936 ~ 41021502 (+)
G803457 NA other upstream 1692410 40467628 ~ 40468002 (+)
G803437 selenok other upstream 1710473 40442896 ~ 40449939 (+)
G805451 NA other downstream 152772 42332093 ~ 42332438 (+)
G805600 NA other downstream 166855 42346176 ~ 42348786 (+)
G807677 NA other downstream 2016394 44195715 ~ 44196041 (+)
G807841 NA other downstream 2263341 44442662 ~ 44453077 (+)
G809685 NA other downstream 3955410 46134731 ~ 46135732 (+)

Expression


Co-expression Network