LOC110532122 (LOC106572240)


Basic Information

Item Value
gene id LOC110532122
gene name LOC106572240
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 42209835 ~ 42236639 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615741.2
TTTAATCCTCTGACCATTCAGGAGTTAATAACGGGAAGAGGGCATATTTTTCTCACTGCTCGCTTGATAGAAACAGAAAAGTAGGTCTGCGTTCCGGTGCAGAATGAAGCGTTCCGAAAGGGCACCCGACCCCGTGCCGCAGACACGGTGGATGACACATTATCGGTGATTTTTCGCCTAAAAGTAGATGGAATGTAAACTTGACCTCACACACTAACGGGGAAGATGAGTTGTGCTTTTTCTCAATGTCTCATCGTATATATTTTGGATTTGGCAGTTGGCTATTTAACGGTCACTCTTGAGTCCCTCCCTCCCATTGTCATTGGAGACACGGTGACACTCAAGTGCAATTTCAGGACAGATGGCAACCTGCGAGAGATTGTATGGTTTCGGGTGACAGAGGGTGGCAGTGCCAAGCAGAAGATCTTCACCTACGATGCCATGTACAACAGCAACTTCTCCCATATGGAGGACTTCCGCAGACGAGAAGACCTGGCCTACCAATCAACTGTCCGGCTTCCTGAGGTGCAGATGGAAGATGATGGACCATATGAGTGCCATGTGGGGATCTACGACAAGGCCTCTAGAGACAGGGTGGTCTTAGCCTCAGGCACCATTGTGCTCACTGTCATGGTGCCTCCTAAATCCATCTCTGTAGTGGCAGCAGACTGCCCGGCCCCCTTCAATCGCTACGAGGCCCAGAACTTCACTCTAATCTGCATCGTCATGGGAGGAAAGCCAGCCCCTATGGTGTACTTCAAGCGTGACAGCGAGCTGATCGACGTGTTCCCCTCTATTATGGAGGGTGGTGGGGGCCAGTCCCAGGGAAGGGGCCTGGCAGGTCTACGGGGCTCTAGGCCCCTGATCAGCAGAGATCTGGATGACACCAAGCTGAAGAAGTCCCTCTCCCTGCTGGACCAGGACCAGGGGGAGCCCCCCCATCTGGACCATGACACCCCTGGGACCAGAGGGACAGGGAAGACAGGAGGGGCCAGGGAGGGACCAGGGGCCCTGGGAGAGCCTGGCGGTGTGGAGGGGTCTGAGCCCAGCTCCACCACCACGGAGGTGATCCCAGAGACGGTGGTAAGCCGGGAGTTCCCCCGCTGGGTGCAGAGCACAGACCCACTCTACTACTTCCAGCACAGGCGGCAGGTCTCCAGCGATGGCACCATGGAGGTCAGAGCCATGCTCACCTGGAGCCTCAACCCCCAACTGGACAACGACGCCCTGTTCAGCTGCGAGGTCAAGCATCCAGCTCTGTCCATGCCCATGCAGGCTGAGGTCACTCTGTCTGCTCCCAGGGGCCCCAAACTCTCCATGTCGCCTGGTAAGGCTAAAGTAGGAGACACTGTCCGCATTAcagttcagggcctccagatCTCTTCCACAGGGAACATGGTGTTCCCCGAGCCACTGTTCACCTGGACCAGGGTGGGAGGTAATTTGCTGGACGGGAGAGAGGACCATAATGGGAGGGAGCTGGTGCTTGAGAGAGTACCAGCCGAGCTCAACGGCTCCATGTTCCGATGCACTGCCCAGAACCCTCTGGgatccactgacacacacacgcggctcatcgtgtttgAAAACCCAAGACTTAAGAAGGGGAGACATTTTGTTGATGCAGCCTATTGCAATGAGGCACTGGAGCTGACCACCATGCTGTTAATGTTAGCCGTGACATGGGAGATGACGTGAACAGCTAAATGGACCCCTGCCCTTCTCCAGTCTCACTAGTCTCTCGAGTTTCTCCTCTGTCGCTCACTTCCCCATCTGCAGTTCCAGCTACTGGAGCTGAGGCACTGTTCACTTTTCATAAAAGCAGCTTAGGAAAAGAAAAACGTTGTCAGAAAGAAGATGAGAACTACATACATTCTAACTCTCTAGGCTTTTATGTTGTCATTCTGCTTGCCTAACTGCTTCTTCCCTTTTGGTTTTTTCAACATCCAATGACCAACTATCACAGTGGTTATGTTTTATAGTAGACCCCAACCTGTGTTAGAGGTAATTTTAACCAAGTTTATGTGGGCTGGCCCACATTAGATGCTTTTTCCCCATCTTCCTGTTATTTGAAGGTCAGAACACATACAATATGACATGTTTTTTGACATATCTTGGTCAGCAAGTCCTTGgataaaataaatgtttggtTGGAAGAAA
>XM_021615740.2
TAATCCTCTGACCATTCAGGAGTTAATAACGGGAAGAGGGCATATTTTTCTCACTGCTCGCTTGATAGAAACAGAAAAGTAGGTCTGCGTTCCGGTGCAGAATGAAGCGTTCCGAAAGGGCACCCGACCCCGTGCCGCAGACACGGTGGATGACACATTATCGGTGATTTTTCGCCTAAAAGTAGATGGAATGTAAACTTGACCTCACACACTAACGGGGAAGATGAGTTGTGCTTTTTCTCAATGTCTCATCGTATATATTTTGGATTTGGCAGTTGGCTATTTAACGGTCACTCTTGAGTCCCTCCCTCCCATTGTCATTGGAGACACGGTGACACTCAAGTGCAATTTCAGGACAGATGGCAACCTGCGAGAGATTGTATGGTTTCGGGTGACAGAGGGTGGCAGTGCCAAGCAGAAGATCTTCACCTACGATGCCATGTACAACAGCAACTTCTCCCATATGGAGGACTTCCGCAGACGAGAAGACCTGGCCTACCAATCAACTGTCCGGCTTCCTGAGGTGCAGATGGAAGATGATGGACCATATGAGTGCCATGTGGGGATCTACGACAAGGCCTCTAGAGACAGGGTGGTCTTAGCCTCAGGCACCATTGTGCTCACTGTCATGGTGCCTCCTAAATCCATCTCTGTAGTGGCAGCAGACTGCCCGGCCCCCTTCAATCGCTACGAGGCCCAGAACTTCACTCTAATCTGCATCGTCATGGGAGGAAAGCCAGCCCCTATGGTGTACTTCAAGCGTGACAGCGAGCTGATCGACGTGTTCCCCTCTATTATGGAGGGTGGTGGGGGCCAGTCCCAGGGAAGGGGCCTGGCAGGTCTACGGGGCTCTAGGCCCCTGATCAGCAGAGATCTGGATGACACCAAGCTGAAGAAGTCCCTCTCCCTGCTGGACCAGGACCAGGGGGAGCCCCCCCATCTGGACCATGACACCCCTGGGACCAGAGGGACAGGGAAGACAGGAGGGGCCAGGGAGGGACCAGGGGCCCTGGGAGAGCCTGGCGGTGTGGAGGGGTCTGAGCCCAGCTCCACCACCACGGAGGTGATCCCAGAGACGGTGGTAAGCCGGGAGTTCCCCCGCTGGGTGCAGAGCACAGACCCACTCTACTACTTCCAGCACAGGCGGCAGGTCTCCAGCGATGGCACCATGGAGGTCAGAGCCATGCTCACCTGGAGCCTCAACCCCCAACTGGACAACGACGCCCTGTTCAGCTGCGAGGTCAAGCATCCAGCTCTGTCCATGCCCATGCAGGCTGAGGTCACTCTGTCTGCTCCCAGGGGCCCCAAACTCTCCATGTCGCCTGGTAAGGCTAAAGTAGGAGACACTGTCCGCATTAcagttcagggcctccagatCTCTTCCACAGGGAACATGGTGTTCCCCGAGCCACTGTTCACCTGGACCAGGGTGGGAGGTAATTTGCTGGACGGGAGAGAGGACCATAATGGGAGGGAGCTGGTGCTTGAGAGAGTACCAGCCGAGCTCAACGGCTCCATGTTCCGATGCACTGCCCAGAACCCTCTGGgatccactgacacacacacgcggctcatcgtgtttgAAAACCCAAGACTTAAGAAGGGGAGACATTTTGTTGCAGATGCAGCCTATTGCAATGAGGCACTGGAGCTGACCACCATGCTGTTAATGTTAGCCGTGACATGGGAGATGACGTGAACAGCTAAATGGACCCCTGCCCTTCTCCAGTCTCACTAGTCTCTCGAGTTTCTCCTCTGTCGCTCACTTCCCCATCTGCAGTTCCAGCTACTGGAGCTGAGGCACTGTTCACTTTTCATAAAAGCAGCTTAGGAAAAGAAAAACGTTGTCAGAAAGAAGATGAGAACTACATACATTCTAACTCTCTAGGCTTTTATGTTGTCATTCTGCTTGCCTAACTGCTTCTTCCCTTTTGGTTTTTTCAACATCCAATGACCAACTATCACAGTGGTTATGTTTTATAGTAGACCCCAACCTGTGTTAGAGGTAATTTTAACCAAGTTTATGTGGGCTGGCCCACATTAGATGCTTTTTCCCCATCTTCCTGTTATTTGAAGGTCAGAACACATACAATATGACATGTTTTTTGACATATCTTGGTCAGCAAGTCCTTGgataaaataaatgtttggtTGGAAGAAA

Function

NR:

description
immunoglobulin superfamily member 21-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615741.2 False 2160 mRNA 0.52 10 42209835 42236639
XM_021615740.2 True 2161 mRNA 0.52 10 42209837 42236639

Neighbor

gene id symbol gene type direction distance location
LOC118966050 NA coding upstream 30514 42160412 ~ 42179321 (+)
LOC110532121 LOC106572248 coding upstream 84966 42118391 ~ 42124869 (+)
LOC110532118 LOC106566808 coding upstream 109886 42094188 ~ 42099949 (+)
LOC110531180 LOC106572301 coding upstream 135493 42065184 ~ 42074342 (+)
LOC110532112 LOC106572249 coding upstream 149240 42041718 ~ 42060595 (+)
LOC110532123 LOC106572239 coding downstream 705 42237344 ~ 42246426 (+)
LOC110532129 LOC106572329 coding downstream 188443 42425082 ~ 42431053 (+)
glut1b LOC106572233 coding downstream 280507 42496861 ~ 42529048 (+)
trappc6b trappc6b coding downstream 304382 42541021 ~ 42546531 (+)
tpx2 LOC106572230 coding downstream 310206 42546845 ~ 42556493 (+)
G805348 NA non-coding upstream 55336 42154291 ~ 42154499 (+)
G805344 NA non-coding upstream 58296 42151295 ~ 42151539 (+)
G805340 NA non-coding upstream 63160 42146468 ~ 42146675 (+)
G805339 NA non-coding upstream 63918 42145622 ~ 42145917 (+)
G805336 NA non-coding upstream 67962 42141437 ~ 42141873 (+)
G805422 NA non-coding downstream 52651 42289290 ~ 42289548 (+)
G805423 NA non-coding downstream 52915 42289554 ~ 42291000 (+)
G805601 NA non-coding downstream 108962 42345601 ~ 42345839 (+)
G805638 NA non-coding downstream 162006 42398645 ~ 42398855 (+)
G805640 NA non-coding downstream 164675 42401314 ~ 42401631 (+)
LOC110532114 LOC106572334 other upstream 185432 42021496 ~ 42027071 (+)
LOC110532096 LOC106572259 other upstream 774412 41423598 ~ 41452922 (+)
G803728 NA other upstream 1188333 41020936 ~ 41021502 (+)
G803457 NA other upstream 1741833 40467628 ~ 40468002 (+)
G803437 selenok other upstream 1759896 40442896 ~ 40449939 (+)
G805451 NA other downstream 95454 42332093 ~ 42332438 (+)
G805600 NA other downstream 109537 42346176 ~ 42348786 (+)
G807677 NA other downstream 1959076 44195715 ~ 44196041 (+)
G807841 NA other downstream 2206023 44442662 ~ 44453077 (+)
G809685 NA other downstream 3898092 46134731 ~ 46135732 (+)

Expression


Co-expression Network