LOC110532123 (LOC106572239)


Basic Information

Item Value
gene id LOC110532123
gene name LOC106572239
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 42237344 ~ 42246426 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615744.2
TAACTCACAGTTAAATCGGAGGGACTTTAATCTCCAACAACTGTCAATCAACATTAATGGGCTATATAAAGCCATATTGTCGTCATACCCGTAGTCAGACAGTGCTGGGATTGAAAAGGCTAAACATAGTCGAAGACGTAAAATCCAAATATTGTTGGTTGGTTGGCGCACGCACTGTTGGCATTGGCACTCAATGTCAGCTATTGTCACTGCATGTTCGTACTGTGCCTATTATAACAGAGACTTATGTGTCAACCTCAAACTGGAGTGATGATAATTCTGTCGTAGAGGGGTAGTGTTATGGAGAAGACTTAAAATTCCAACATCTGGCATCCACGCACTTTGGGAAGGTGTGCATTGCCTATGTGGATAGTCCAATTGTATTCTCAGAAAAAGGCATCTTTATACCTCAAAGTCGTAATGGAACTAAATAACTTGGGACACGCTTTGATTTTCCCGTTCAACATCCTCTTCTGCATATTAAAAGCATGCTTTGGGTTGTTGCTCCCGAGCAGACGGAAGGACCTACGTGGAGAGGTGGTGCTGATCACCGGCGGTGGACGGGGCATCGGTCGGCATTTGGGGAAAGAGTTCGCAAAACATGGAGCAAAAAAGGTGATCCTGTGGGGCCGCACTGAGAGGTGCCTGAAGGAGACCTGCGAGGAGATCTCTCTCACCACCGGCGTTGAGTGCCACTACTTCCTGTGTGACGTGGCCAATCGCGAGGAGGTGTACAAGCAGGCCAAGGTGGTCCGAGAGAAGGTAGGCGACGTCACCATTCTGGTGAATAATGCAGCAGTTGTTCATGGGAAGAGTCTGATGGACAGTGACGATGATGCCCTGATGAAGactcaacacatcaacacactggGCCAGTTCTGGaccACCAAAGCTTTCCTACCCCGCATTCTGGAACTTTGCCATGGCCACGTGGTGTGCATCAACTCCATCCTGTCCCTGTCCTCCATCCCGGGGGCCATAGATTATTGCACCTCCAAGGCATCATCACTGGCCTTCATGGAGAGCCTGACCCTGGGCCTGCTGGACTGCCCAGGGGTGGGCTGCACCACCGTGCTCCCCTTCCACACCAACACAGACATGTTTCAGGGCATGAAAGTCAGATTCCCTCAGCTCTTCCCACCGCTGAATCCTGAGCTGGTGGCCCAGCGGACGGTGGACGCCGTCCGGACCAACACGCCGTTCGTCTACTTACCATGGACCATGCACGCTCTCGTTATCCTCAAGAGCCTCCTGCCTCAGGCGGCCCTGGAGGAAATCCATCGCTTCTCAGGGTGCTACACCTGCATGGACACCTTCAAGGGACGGACATAGGAATGGAGGCCAGGCACGAGTACTGCCCTGGTCGTTCTTGAATTGCGGTGGCATTTGCGTCGCTTGCCTTTGCAACcatgaaaaacacatttaaaatgaCATAGTTACACATCATAAATGTTTTTGTATATATTGAACTGTTTATAAATGGTAGAACATAATGCAAGTCCTTTATCCTGCAGAACTGTGGGTTTAGGCATTGTTTAAAGTACTTTGGGTATGCAAATGGGCTTGTCCCACTAGTGATGTGTAGAATTGTAGTGTTTTAGAGATGCTGCATCTATCTATTACTATGAATGCTAGAAAGTGAACTAAACTATTTAATATATTGCATAGATCAATTAAAACAAAGGCTATTTAAATACCTATTTTCTTTACTCATATAATGTGTCACTCAGTTTCATGTCATTAGTGTTACCGCCTTGAAAATCACTCATTACAAAGATTAACAAGGACTCCAGTGGCGAACTGTTATCGGGGAAgggtctatattaaagggaacTCTTAGCTAATCACA

Function

NR:

description
short-chain dehydrogenase/reductase 3-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615744.2 True 1849 mRNA 0.47 6 42237344 42246426

Neighbor

gene id symbol gene type direction distance location
LOC110532122 LOC106572240 coding upstream 705 42209835 ~ 42236639 (+)
LOC118966050 NA coding upstream 58023 42160412 ~ 42179321 (+)
LOC110532121 LOC106572248 coding upstream 112475 42118391 ~ 42124869 (+)
LOC110532118 LOC106566808 coding upstream 137395 42094188 ~ 42099949 (+)
LOC110531180 LOC106572301 coding upstream 163002 42065184 ~ 42074342 (+)
LOC110532129 LOC106572329 coding downstream 178656 42425082 ~ 42431053 (+)
glut1b LOC106572233 coding downstream 270720 42496861 ~ 42529048 (+)
trappc6b trappc6b coding downstream 294595 42541021 ~ 42546531 (+)
tpx2 LOC106572230 coding downstream 300419 42546845 ~ 42556493 (+)
LOC110532135 LOC106566930 coding downstream 316982 42563408 ~ 42565334 (+)
G805323 rcc2 non-coding upstream 19277 42157527 ~ 42218067 (+)
G805348 NA non-coding upstream 82845 42154291 ~ 42154499 (+)
G805344 NA non-coding upstream 85805 42151295 ~ 42151539 (+)
G805340 NA non-coding upstream 90669 42146468 ~ 42146675 (+)
G805339 NA non-coding upstream 91427 42145622 ~ 42145917 (+)
G805422 NA non-coding downstream 42864 42289290 ~ 42289548 (+)
G805423 NA non-coding downstream 43128 42289554 ~ 42291000 (+)
G805601 NA non-coding downstream 99175 42345601 ~ 42345839 (+)
G805638 NA non-coding downstream 152219 42398645 ~ 42398855 (+)
G805640 NA non-coding downstream 154888 42401314 ~ 42401631 (+)
LOC110532114 LOC106572334 other upstream 212941 42021496 ~ 42027071 (+)
LOC110532096 LOC106572259 other upstream 801921 41423598 ~ 41452922 (+)
G803728 NA other upstream 1215842 41020936 ~ 41021502 (+)
G803457 NA other upstream 1769342 40467628 ~ 40468002 (+)
G803437 selenok other upstream 1787405 40442896 ~ 40449939 (+)
G805451 NA other downstream 85667 42332093 ~ 42332438 (+)
G805600 NA other downstream 99750 42346176 ~ 42348786 (+)
G807677 NA other downstream 1949289 44195715 ~ 44196041 (+)
G807841 NA other downstream 2196236 44442662 ~ 44453077 (+)
G809685 NA other downstream 3888305 46134731 ~ 46135732 (+)

Expression


Co-expression Network