LOC110532126 (LOC106572238)



Basic Information


Item Value
gene id LOC110532126
gene name LOC106572238
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 42313488 ~ 42341574 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021615746.2
TCACTCCTCCCCTTATTCCCTCAAAGCCAGCAGGCTGCTATTCGATACAGACGGCTTGCTACATGATCTCCTGGAAAACACTGTTCCGCATCTCTCTTGCCACTCGATGGCCAGGCCTTTGTAGATTATACACCAAGCGGAAGAGAGATGCCAGCGCCAGGACATTGACTCCTTTCCTCCTTCTGCTTCCCCCTCCCCTTCCTTAATCTCCCACCTCTTGATCTCTACCCACCCCCCGTGCCCTCTCCTGTCCTGTGCCCCCTTCCTCCCAACCTCCCCCTCCCCTACCCTACCTAAAGTCCTACTCTCCCTCTTACCCCCTTGACAATGTTACCATGCATTAACTGGCTTCAGCCTTTCCTTGCCTTGCTCTCTTCCACCTTGCTGACTCGGGGCCACAACTGTCCGTCCAGCTGCCTGTGTCCAGACCACCACACCGTGGACTGCCAGGGCCAAGGTCTCACCCGCCTCCCAAGCCCCATCCCCCTGGATGTCCGGCGCCTCCTGCTCTCTGACAACTGGATTCCCTTGATCCCCTCGGATTTCCTGGTTCTGTACAGTGACCTGGTCTACCTGGACCTGAGGAATAACTCCCTGTCTGGGCTGGAGCCTGGCACTCTCAGCACATCGTCCCGCCTGGTCTTCCTGGACCTGGGCAGCAACAACCTGACAGAGATCCAGTCAGAGACCTTTGGAGAGTCCAGGAGCCTGATTAAGTTGCGGCTGGGGAACAACCCCTATCTTAGCCAGGTGGAGGAGGACGCTTTCCTGGGTCTCACCTCGCTGCGGGTGCTGGAGCTGGAGCGAAACGGCCTGCAGGGGCTGGACGTGGGGGTGCTGGAGCCTTTAACCTCACTCCGGGTGCTGCGCCTGGAGGGCAACCCCTGGGTGTGCAACTGTCACTTTGCTAAACTCTTTGTGTGGCTGATGGAGAACCGCCACAAGCTTCCAACGGgtatGGAAGGGTTGGAGTGCTCCCTCCCCATGGACGGGAGTCTTATGTCCCTGAGTCTGCTCTCTGAGGCCAGTTTCCGGGAGTGCCGGGGCTACCTCTCCCTCACGGATATCCTCATAGTCATCTTCTCGGGGATCTCCGTCTCTGTGGTAGCCATCATAGCCAGTTTCTTTCTGGCCTCTATGGTCCACTGCTTCCAGCGCCTGGGCAAAGCCGGTCAGGCAGACGAGGAGGAGGGCaacgactgagagagagaaagagcgtgaTCTGGGACCAGATTCAGTGTCACTGCAGGCATTGCAGACCCTGACTACATACCTTGTAAGAGGGCCAGGAAGAAGGGCAGGAAAATGGAAGAGTAAGTCAAGGACAACAAGGGAGTATTTGGCCCAGGAATTGGGCTAAAAGGCTCTTACCATGTGAATTCCTGCTCGCCGCATTGGTGGCAGTCAGAGGCACACCAGGAGGGGTGCTAGGGCAGTGGGTTAAACTGTACGCTTGAATAATACAAATGTTTTCTTAGCACTGCCTTAGTGTACACAGCCTTACTACCTTACTTTGGAGAGATCCTCCAGCATTCCCTTGAAATCGTAGTACTATATTTGGGCTGTACTTTAAATCTAACATGAGGTAAAATTACTTGCACCACTCTTTCAAAGAGGACTATTCCTCTGCTGCAGGTTCTTTGAGATCTGGGTTGAGCTGAGAGGTAAAAGGGCAGAGAGGAGGACAAGGGACAGGCACACTGGAGTCTAATACATAACTATGTCCATTGCAGTGATTTGAGTAGCAACCTACTTAACCTCTGTTTACCAAAGAGCAGGCTGAATGAGAAGATTCTATTGTTACAATATAGAACACAGAAACTGGATAGCGTGAGCAATCAACATGGATGTTACACTAAACTGTGACACAAACTCTCAAATGCAAAATCAAGTAAATATGGAGGATGTTGTTACAATATCTGTTTTTGGAGCACAAATGTAGCCTGACTATGTTTGGCGAGACAACGCCctaaggagttggcaagagagcacaAACAGTCTGTTACTTAGGCTAGCACAAATGTAATATTGGTTAAAAAACAATCACACATtaggtacagtatactgtatagaACAATATGCTAAAATAACCTGCCATTTATGACCCACAAATGTAACTATGGAAATAATTAGATTATACAGCTTGTACTGTAAGTGGACCAATGTATTTTCCTGTTTCAGgcataattattttatttattttttacatttgaacaAAAGGTTTATAGTGATACTGAAGCTTTTGttgatgttttgtttttttttttttttttttttacaaattaagtCTTCTCTTGTTTGTATGGGGATTTCACATGGTAACAGTATTGTCACATCGGCAAAGACTCTAATTCCAAGCTAGGAGGGCTAAGGTAAAAATTAATTCAGTGTTTTGTCgtcttgatcatccttgatgtttggGCCTTCCAGCCATTTCCTGTGTCGGCCTTTATATCCTCAATAGACCAGCAGCTAGTAGCAGCCAGGTGAAATTGATGAATGAATGCTATAGGTCAATGATGTCACGTGTATTGTTTGGCGAAGAGAATAGTGAAACAACTGGTAGATCATAAATGAAAACCAGCATGGTCACAGATGCTTCAAGACCTGAGTTTTGAGCGGGTGTCCACCTGTCTCACTTACGTTGCTTCAGTCaaactgtatctgtctctggCGCTTGTAACCCaccaatgagatttgctggcgcTTGCAACCCaccaatgagatttgctggcgcTTGCAACCCaccaatgagatttgctggcgcTTGCAACCCACCGATGAGATTTGAGATCCCAAAAACAGATGAAAGGGCTTTTTTTTTCTGTCATGATGCACCATAACAAACACCTTGAAAAGATAATCAAGGGGTTGCAAAGTGCAATATAACAAAAATGTAAAGagataaaataaagtggtaaaaTGCACACACTAACTTTGCTTTAAAACTTTGATTTCACATACCTGTCTTGTTTCTTTGAATGAAGACATCGGTCAAATATATTAGTATTTTATTGATTTAACTCTTATATAACAAGGTGTCTTAATGGAGAACCAATTCTCATTTGCAATAATAACCTTTTGGAACGAGAAACACCCTGCTACGcatgtgtaatgtaatggtaTTTATCTCTGTCAAACAAAACTTTCACATGTCAACACGGAGCACCTCTTTCACATGCAACACAACCTATATATGGTTGAAAAAATCCCACTTCCGTTGTATTGTTTGAAATTGTGGCCTGTAGAAATGTCCTATTTCTCTAGTCCAGTCTCATGGATGTATACCCACAGACAGTGGCATCTTACAGAGAAGAGCAGATGTCCCTGTCCAACCAAAGGATCCCATATGTGGCCAATAGGGTTGACCTTTACTCTCAATGAAATCTGTTTGTTTCGGTCCAATAATCACAGCTCCCATAATGCTACAGCTGGCATCCATATCCCACGCCATAGAACAGAGAGGTGAGGATGGAAGGGCACCCTCATTGTTATTTGGCATGTGGTCATCAGATTTGTTTACCCTACGAATATAGAGTATATTCTTATTTGTGTTATAATACAGTAAAATTGGCAGACTATCTGAGATAATACGCAATAGAGATAACCACTGTCATACCAGCTACATCACTGTCTAGGTTCTGTTTGATAGGataacacaacactgtcctgttaTTGTTCTGATGGTAATATTTTTCTTTAAAACGTTTATTTATATCATGTATTTGTATGTCCTTGTGGACCTTAATGATGTTATACACGCTGAAATAGTGCCTCGTGCACTGGGAGTCAGCATGCTGTTAGAAAGTGTCGGGGAAGGGAGATGAACAATACTGTCTTGTGTGCTGTAAAACAACTGGATGGCATAGAGTTGAAGCCTGTGGGCACGGCACACACAAACAAAGGGAACGGATGAACAGCGGGGTGTTGAGTCAGAACAGAACTCCGACTCCAACACGCCACTGATGAAGATCAGAGTGGAGGGATGGTGAGCCATTCTGCCAGTGCCTCCCTCCTCATCCTTTATGCCGTGCAGTCAGCTGAGCCACCATACAGAGTGGACAGAAGTAGGATGAGAgcggaggaggggaaggaggattTTCGGGAATGAGGATTTTCCCTCCACTGAATTCCGGTTGTCGCCATGGTTACATGGCTGGAGGCCAGTTCGGGTTGGAAGCCGAAACTGCCACAGAGAGGAAGAGATTTCAAAATTGCTACGTCActgctcgctctttctctctcccccgtctaCTACATTGAGACGGAAATAACAAACAGCTGAATTATACAATAGCATTATAATTCTGATGCCAAACACTTGTGCAAGTGAGACACAACTTCACTCAATCGAATGCCTCAATGTTACACCCTCTGAGGATGGATGCATGTAAACCAATACCATCCCTGTCACGTGTCCAATGATCCACATCTACTTAATGTGGCTTACCCTGCAGAGATAACTGCGGTGGCCTGCAGGGTCAAAAATATGTAGAGAACATAGGAAGTAATACTACACCTTGCGTGAGTTGAACATTCTGAATAATTGAACAGCAGCTGAACAGTATGAATAATTTCTCTGTGGTCCACAAAAGGGATTAGAGTGACAGAGGTCCATGACCACGTTGACTGCCACAGCACCAATAAGGGACAAACGACTTGGAACCAGTTCAAATCTAGAAATCCAGCGATAAAGATAGTGGCATTATGGTGCCAATGACTGAAATCAGTGGTTAGAACTGGAAGAAACCAAAACACCGGAGTACCACACAACAATTGTATGTATGgggcacagagatgaggtagtaattTGAAAATCATGATAAGAActactattgcacacagagtccatacaacttattatgtgggttaacaaaggggttgactacttgttgactcaagacatttgagCATTACATTTTTTATGAATATGTAAAAATTCTGAAAa

Function


NR:

description
leucine-rich repeat-containing protein 38-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021615746.2 True 4948 mRNA 0.45 2 42313488 42341574

Neighbor


gene id symbol gene type direction distance location
LOC118966051 NA coding downstream 13526 42297951 ~ 42299962 (-)
LOC110532125 vps13d coding downstream 23670 42263238 ~ 42289818 (-)
LOC110532120 LOC106572241 coding downstream 152914 42155085 ~ 42160574 (-)
LOC110532119 LOC106572245 coding downstream 171875 42125255 ~ 42141613 (-)
rnf207b LOC106572244 coding downstream 199123 42098270 ~ 42114365 (-)
LOC110532127 LOC106572237 coding upstream 4308 42345882 ~ 42404462 (-)
LOC110532130 LOC106572235 coding upstream 95193 42436767 ~ 42484817 (-)
LOC110532134 LOC106572229 coding upstream 223825 42565399 ~ 42570961 (-)
LOC110532137 LOC106572227 coding upstream 257711 42599285 ~ 42612476 (-)
myt1a LOC106572224 coding upstream 276574 42618148 ~ 42654062 (-)
G805571 NA non-coding downstream 19909 42292952 ~ 42293579 (-)
G805553 NA non-coding downstream 23335 42289826 ~ 42290153 (-)
G805569 NA non-coding downstream 25652 42287568 ~ 42287836 (-)
G805550 NA non-coding downstream 44436 42257552 ~ 42269052 (-)
G805538 NA non-coding downstream 76258 42236890 ~ 42237230 (-)
G805848 NA non-coding upstream 57217 42398791 ~ 42399144 (-)
G805871 NA non-coding upstream 92827 42434401 ~ 42436590 (-)
G805878 NA non-coding upstream 116090 42457664 ~ 42457965 (-)
G805910 NA non-coding upstream 175519 42517093 ~ 42518787 (-)
G806006 NA non-coding upstream 332471 42674045 ~ 42674265 (-)
G804543 LOC106572259 other downstream 875517 41437030 ~ 41437971 (-)
G804255 NA other downstream 1328243 40984482 ~ 40985245 (-)
wdr6 wdr6 other downstream 1397514 40904738 ~ 40916073 (-)
G804307 NA other downstream 1401130 40862589 ~ 40912358 (-)
G806724 LOC106572208 other upstream 990356 43331930 ~ 43339589 (-)
prdm16 prdm16 other upstream 1598992 43781726 ~ 44015554 (-)
tafa5l LOC106572193 other upstream 1907224 44247091 ~ 44292397 (-)
G807941 NA other upstream 2019842 44361416 ~ 44362166 (-)
G808375 NA other upstream 2292985 44634559 ~ 44636846 (-)

Expression



Co-expression Network