XLOC_026707 (kdm8)


Basic Information

Item Value
gene id XLOC_026707
gene name kdm8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 44081620 ~ 44094451 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052006
GTATTTTTAACCTCTTGTAGATGATGCATGTCGCTGTAATACtttcattttaacttattttacagATTATCACGACGTCTACGCTATTCGTGCACACgATCACACATCAGAAATATGAGAATATAAGTGGTCTTGAATACTTCTCATGGCTTCGGTTTGGACAGATATTCGGGCTGTTTTGCCCTCGACTGTGTCTGAATTTCCTCTTGACTTTAGTGAAAAGATTGAACTCAGTGTGCTGAAGTGTCTCGAGCTGTCCAGAGATCAGCTGTACAGTGAAGCAGATTGTCCAGTTTCTGCCGAAAGAGCCCAGATCATTATAGATTACTCCTGGGAGAAGCTCAACATTGGCACATGGAGAGATGTGGACAAAGAGTGGAGGAGAGTTTACTCTTATGGCTGCTTGTTCAAAGTATTAAGTTTATGTCATGGAAATCCACCTCAAAACATCATTCAGGAGGCCATTAGGACGTGTGACATGAGTTTGTTGATGGGAGCAGCCATCATGGACAACATTCTGCAAAGACTGGTTGGCATCTTGAGGAATAAAATTAAAACGACGAGTCCAAACAAAGCAGAGTGGAGCGAAGAGCCATGTTCAAAGAAAAGGAAACATGACTGTAAATCCGAGCCTGTATTAAACCCCACTAAGGAAGTTCCCAGGATTCACTGTCCATCTCTGGAGCGCTTCAGATCAGATTTCCTCGATTCTAAGAAGCCTGTGATCATAGAGGGAATAACTGACCACTGGCCAGCTTTCACTCAGCATCCATGGAGCATAGACTATTTAAGGACTGTCGCCGGCTGCCGGACGGTACCGATTGAAGTGGGATCCAAGTACACAGACGAAGAGTGGTCACAAAAGCTCATTACAGTGAATGACTTTATAGACCGCTACATTACAGGAACCGAGGAAGATGGAGTGGGATATTTGGCTCAGCATCAGCTGTTTGATCAGGTTCCAGAGCTGAAAGAAGACATTCGTATCCCAGACTATTGTTGTCTTGGAGAGGGAGATGAGGATGACATTACAATCAATGCCTGGTTTGGGCCTGGAGGGACTGTCTCTCCTCTTCATCAGGATCCTCAACAGAATTTTTTGGCACAGGTGGTTGGACGAAAATACATCCGGCTTTACAGCCCAGAGGAAACAAAAAGTCTGTATCCACACGAGTCGCAGCTACTCCATAACACCAGTCAGGTGGAGGTGGAGAATCCAGACCTGGTGAAGTTTCCAGATTTCAGTAGAGCCTCTTATGAGGAGTGTGTTCTCTGTCCTGGGGACGTCCTCTTCATCCCACTACAGCACTGGCATTATGTGCGATCCCTAGAGCTCAGCTTTTCTGTCAGCTTTTGGTGGTCCTGATTTGTACTGAATAAACCAGCATTCTCAGTT
>TCONS_00052007
GATGCATGTCGCTGTAATACtttcattttaacttattttacagATTATCACGACGTCTACGCTATTCGTGCACACggtatttttattgtttaccaTGTATCATGACGAATATGAAATGTAATGCACGACATTTCGTATCTTAATACAATGAGCAGCCTCTCCTTAGCAACTTATTTACACCTATGATAACTTTTCACCAGATCACACATCAGAAATATGAGAATATAAGTGGTCTTGAATACTTCTCATGGCTTCGGTTTGGACAGATATTCGGGCTGTTTTGCCCTCGACTGTGTCTGAATTTCCTCTTGACTTTAGTGAAAAGATTGAACTCAGTGTGCTGAAGTGTCTCGAGCTGTCCAGAGATCAGCTGTACAGTGAAGCAGATTGTCCAGTTTCTGCCGAAAGAGCCCAGATCATTATAGATTACTCCTGGGAGAAGCTCAACATTGGCACATGGAGAGATGTGGACAAAGAGTGGAGGAGAGTTTACTCTTATGGCTGCTTGTTCAAAGTATTAAGTTTATGTCATGGAAATCCACCTCAAAACATCATTCAGGAGGCCATTAGGACGTGTGACATGAGTTTGTTGATGGGAGCAGCCATCATGGACAACATTCTGCAAAGACTGGTTGGCATCTTGAGGAATAAAATTAAAACGACGAGTCCAAACAAAGCAGAGTGGAGCGAAGAGCCATGTTCAAAGAAAAGGAAACATGACTGTAAATCCGAGCCTGTATTAAACCCCACTAAGGAAGTTCCCAGGATTCACTGTCCATCTCTGGAGCGCTTCAGATCAGATTTCCTCGATTCTAAGAAGCCTGTGATCATAGAGGGAATAACTGACCACTGGCCAGCTTTCACTCAGCATCCATGGAGCATAGACTATTTAAGGACTGTCGCCGGCTGCCGGACGGTACCGATTGAAGTGGGATCCAAGTACACAGACGAAGAGTGGTCACAAAAGCTCATTACAGTGAATGACTTTATAGACCGCTACATTACAGGAACCGTAAGcaactgaaatactgtatttttgtatatctAAAGTGGCTGTTTTGTCTGTAAAAGCTATTTTAGGTTATTTGCTTTTAGGAGGAAGATGGAGTGGGATATTTGGCTCAGCATCAGCTGTTTGATCAGattttgCCTTTCATTTTGTGCATAATTTAGATGATTGTGAATGTAAAGGGTCTGCAAAGATCAAAGTGCAGGATTAATGGAGTAATTGGTccctaaaagaaagaaaagatctGTTCCAGAGCTGAAAGAAGACATTCGTATCCCAGACTATTGTTGTCTTGGAGAGGGAGATGAGGATGACATTACAATCAATGCCTGGTTTGGGCCTGGAGGGACTGTCTCTCCTCTTCATCAGGATCCTCAACAGAATTTTTTGGCACAGGTGGTTGGACGAAAATACATCCGGCTTTACAGCCCAGAGGAAACAAAAAGTCTGTATCCACACGAGTCGCAGCTACTCCATAACACCAGTCAGGTGGAGGTGGAGAATCCAGACCTGGTGAAGTTTCCAGATTTCAGTAGAGCCTCTTATGAGGAGTGTGTTCTCTGTCCTGGGGACGTCCTCTTCATCCCACTACAGCACTGGCATTATGTGCGATCCCTAGAGCTCAGCTTTTCTGTCAGCTTTTGGTGGTCCTGATTTGTACTGAATAAACCAGCATTCTCA
>TCONS_00052009
ATTTTTTACCCTATTCAAAAGAAATATCCTGTCTTACTTCAAcaaaatggtgttaaaaagaAGATTATTTTTACCCTATTCACAAGTATCCTGTCCTACTTATTAATATCATGGTAATTTCATGGTAAGTGTTTCTCGGAATGAATTTCAGAGCGGAACCTTGTATGTTTTCTGTGTTTCTAGCCGGACATGAAAACCAGGCGGTATTTTTAACCTCTTGTAGATGATGCATGTCGCTGTAATACtttcattttaacttattttacagATTATCACGACGTCTACGCTATTCGTGCACACggtatttttattgtttaccaTGTATCATGACGAATATGAAATGTAATGCACGACATTTCGTATCTTAATACAATGAGCAGCCTCTCCTTAGCAACTTATTTACACCTATGATAACTTTTCACCAGATCACACATCAGAAATATGAGAATATAAGTGGTCTTGAATACTTCTCATGGCTTCGGTTTGGACAGATATTCGGGCTGTTTTGCCCTCGACTGTGTCTGAATTTCCTCTTGACTTTAGTGAAAAGATTGAACTCAGTGTGCTGAAGTGTCTCGAGCTGTCCAGAGATCAGCTGTACAGTGAAGCAGATTGTCCAGTTTCTGCCGAAAGAGCCCAGATCATTATAGATTACTCCTGGGAGAAGCTCAACATTGGCACATGGAGAGATGTGGACAAAGAGTGGAGGAGAGTTTACTCTTATGGCTGCTTGTTCAAAGTATTAAGTTTATGTCATGGAAATCCACCTCAAAACATCATTCAGGAGGCCATTAGGACGTGTGACATGAGTTTGTTGATGGGAGCAGCCATCATGGACAACATTCTGCAAAGACTGGTTGGCATCTTGAGGAATAAAATTAAAACGACGAGTCCAAACAAAGCAGAGTGGAGCGAAGAGCCATGTTCAAAGAAAAGGAAACATGACTGTAAATCCGAGCCTGTATTAAACCCCACTAAGGAAGTTCCCAGGATTCACTGTCCATCTCTGGAGCGCTTCAGATCAGATTTCCTCGATTCTAAGAAGCCTGTGATCATAGAGGGAATAACTGACCACTGGCCAGCTTTCACTCAGCATCCATGGAGCATAGACTATTTAAGGACTGTCGCCGGCTGCCGGACGGTACCGATTGAAGTGGGATCCAAGTACACAGACGAAGAGTGGTCACAAAAGCTCATTACAGTGAATGACTTTATAGACCGCTACATTACAGGAACCGTTCCAGAGCTGAAAGAAGACATTCGTATCCCAGACTATTGTTGTCTTGGAGAGGGAGATGAGGATGACATTACAATCAATGCCTGGTTTGGGCCTGGAGGGACTGTCTCTCCTCTTCATCAGGATCCTCAACAGAATTTTTTGGCACAGGTGGTTGGACGAAAATACATCCGGCTTTACAGCCCAGAGGAAACAAAAAGTCTGTATCCACACGAGTCGCAGCTACTCCATAACACCAGTCAGGTGGAGGTGGAGAATCCAGACCTGGTGAAGTTTCCAGATTTCAGTAGAGCCTCTTATGAGGAGTGTGTTCTCTGTCCTGGGGACGTCCTCTTCATCCCACTACAGCACTGGCATTATGTGCGATCCCTAGAGCTCAGCTTTTCTGTCAGCTTTTGGTGGTCCTGA
>TCONS_00052008
ATTTTTTACCCTATTCAAAAGAAATATCCTGTCTTACTTCAAcaaaatggtgttaaaaagaAGATTATTTTTACCCTATTCACAAGTATCCTGTCCTACTTATTAATATCATGGTAATTTCATGGTAAGTGTTTCTCGGAATGAATTTCAGAGCGGAACCTTGTATGTTTTCTGTGTTTCTAGCCGGACATGAAAACCAGGCGGTATTTTTAACCTCTTGTAGATGATGCATGTCGCTGTAATACtttcattttaacttattttacagATTATCACGACGTCTACGCTATTCGTGCACACggtatttttattgtttaccaTGTATCATGACGAATATGAAATGTAATGCACGACATTTCGTATCTTAATACAATGAGCAGCCTCTCCTTAGCAACTTATTTACACCTATGATAACTTTTCACCAGATCACACATCAGAAATATGAGAATATAAGTGGTCTTGAATACTTCTCATGGCTTCGGTTTGGACAGATATTCGGGCTGTTTTGCCCTCGACTGTGTCTGAATTTCCTCTTGACTTTAGTGAAAAGATTGAACTCAGTGTGCTGAAGTGTCTCGAGCTGTCCAGAGATCAGCTGTACAGTGAAGCAGATTGTCCAGTTTCTGCCGAAAGAGCCCAGATCATTATAGATTACTCCTGGGAGAAGCTCAACATTGGCACATGGAGAGATGTGGACAAAGAGTGGAGGAGAGTTTACTCTTATGGCTGCTTGTTCAAAGTATTAAGTTTATGTCATGGAAATCCACCTCAAAACATCATTCAGGAGGCCATTAGGACGTGTGACATGAGTTTGTTGATGGGAGCAGCCATCATGGACAACATTCTGCAAAGACTGGTTGGCATCTTGAGGAATAAAATTAAAACGACGAGTCCAAACAAAGCAGAGTGGAGCGAAGAGCCATGTTCAAAGAAAAGGAAACATGACTGTAAATCCGAGCCTGTATTAAACCCCACTAAGGAAGTTCCCAGGATTCACTGTCCATCTCTGGAGCGCTTCAGATCAGATTTCCTCGATTCTAAGAAGCCTGTGATCATAGAGGGAATAACTGACCACTGGCCAGCTTTCACTCAGCATCCATGGAGCATAGACTATTTAAGGACTGTCGCCGGCTGCCGGACGGTACCGATTGAAGTGGGATCCAAGTACACAGACGAAGAGTGGTCACAAAAGCTCATTACAGTGAATGACTTTATAGACCGCTACATTACAGGAACCGAGGAAGATGGAGTGGGATATTTGGCTCAGCATCAGCTGTTTGATCAGGTTCCAGAGCTGAAAGAAGACATTCGTATCCCAGACTATTGTTGTCTTGGAGAGGGAGATGAGGATGACATTACAATCAATGCCTGGTTTGGGCCTGGAGGGACTGTCTCTCCTCTTCATCAGGATCCTCAACAGAATTTTTTGGCACAGGTGGTTGGACGAAAATACATCCGGCTTTACAGCCCAGAGGAAACAAAAAGTCTGTATCCACACGAGTCGCAGCTACTCCATAACACCAGTCAGGTGGAGGTGGAGAATCCAGACCTGGTGAAGTTTCCAGATTTCAGTAGAGCCTCTTATGAGGAGTGTGTTCTCTGTCCTGGGGACGTCCTCTTCATCCCACTACAGCACTGGCATTATGTGCGATCCCTAGAGCTCAGCTTTTCTGTCAGCTTTTGGTGGTCCTGA
>TCONS_00052010
ATTTTTTACCCTATTCAAAAGAAATATCCTGTCTTACTTCAAcaaaatggtgttaaaaagaAGATTATTTTTACCCTATTCACAAGTATCCTGTCCTACTTATTAATATCATGGTAATTTCATGGTAAGTGTTTCTCGGAATGAATTTCAGAGCGGAACCTTGTATGTTTTCTGTGTTTCTAGCCGGACATGAAAACCAGGCGGTATTTTTAACCTCTTGTAGATGATGCATGTCGCTGTAATACtttcattttaacttattttacagATTATCACGACGTCTACGCTATTCGTGCACACggtatttttattgtttaccaTGTATCATGACGAATATGAAATGTAATGCACGACATTTCGTATCTTAATACAATGAGCAGCCTCTCCTTAGCAACTTATTTACACCTATGATAACTTTTCACCAGATCACACATCAGAAATATGAGAATATAAGTGGTCTTGAATACTTCTCATGGCTTCGGTTTGGACAGATATTCGGGCTGTTTTGCCCTCGACTGTGTCTGAATTTCCTCTTGACTTTAGTGAAAAGATTGAACTCAGTGTGCTGAAGTGTCTCGAGCTGTCCAGAGATCAGCTGTACAGTGAAGCAGATTGTCCAGTTTCTGCCGAAAGAGCCCAGATCATTATAGATTACTCCTGGGAGAAGCTCAACATTGGCACATGGAGAGATGTGGACAAAGAGTGGAGGAGAGTTTACTCTTATGGCTGCTTGTTCAAAGTATTAAGTTTATGTCATGGAAATCCACCTCAAAACATCATTCAGGAGGCCATTAGGACGTGTGACATGAGTTTGTTGATGGGAGCAGCCATCATGGACAACATTCTGCAAAGACTGGTTGGCATCTTGAGGAATAAAATTAAAACGACGAGTCCAAACAAAGCAGAGTGGAGCGAAGAGCCATGTTCAAAGAAAAGGAAACATGACTGTAAATCCGAGCCTGTATTAAACCCCACTAAGGAAGTTCCCAGGATTCACTGTCCATCTCTGGAGCGCTTCAGATCAGATTTCCTCGATTCTAAGAAGCCTGTGATCATAGAGGGAATAACTGACCACTGGCCAGCTTTCACTCAGCATCCATGGAGCATAGACTATTTAAGGACTGTCGCCGGCTGCCGGACGGTACCGATTGAAGTGGGATCCAAGTACACAGACGAAGAGTGGTCACAAAAGCTCATTACAGTGAATGACTTTATAGACCGCTACATTACAGGAACCGTTATTTGCTTTTAG

Function

symbol description
kdm8 Predicted to enable chromatin binding activity and histone demethylase activity (H3-K36 specific). Predicted to be involved in G2/M transition of mitotic cell cycle; histone H3-K36 demethylation; and regulation of gene expression. Predicted to act upstream of or within chromatin organization and rhythmic process. Predicted to be active in nucleus. Orthologous to human KDM8 (lysine demethylase 8).

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0048511 rhythmic process biological_process
GO:0070544 histone H3-K36 demethylation biological_process
GO:0000086 G2/M transition of mitotic cell cycle biological_process
GO:0032922 circadian regulation of gene expression biological_process
GO:0007049 cell cycle biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005634 nucleus cellular_component
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0051213 dioxygenase activity molecular_function
GO:0003682 chromatin binding molecular_function
GO:0051864 histone demethylase activity (H3-K36 specific) molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-040718-411 Predicted to enable chromatin binding activity and histone demethylase activity (H3-K36 specific). Predicted to be involved in G2/M transition of mitotic cell cycle; histone H3-K36 demethylation; and regulation of gene expression. Predicted to act upstream of or within chromatin organization and rhythmic process. Predicted to be active in nucleus. Orthologous to human KDM8 (lysine demethylase 8).

Ensembl:

ensembl_id ENSDARG00000102512

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052006 False 1396 mRNA 0.45 8 44081620 44094248
TCONS_00052007 False 1690 nonsense_mediated_decay 0.43 7 44081623 44094226
TCONS_00052009 False 1645 mRNA 0.43 6 44081650 44094451
TCONS_00052008 False 1693 mRNA 0.43 7 44081650 44094451
TCONS_00052010 True 1252 mRNA 0.41 4 44089023 44094451

Neighbor

gene id symbol gene type direction distance location
XLOC_026706 il4r.1 coding downstream 21583 44048907 ~ 44060037 (-)
XLOC_026705 il4r.2 coding downstream 68816 44002300 ~ 44012804 (-)
XLOC_026704 ubfd1 coding downstream 121747 43942032 ~ 43959873 (-)
XLOC_026703 BX682557.1 coding downstream 192177 43878456 ~ 43889443 (-)
XLOC_026702 BX682557.2 coding downstream 206491 43866785 ~ 43875129 (-)
XLOC_026708 NA coding upstream 17094 44111545 ~ 44124370 (-)
XLOC_026709 NA coding upstream 238296 44332747 ~ 44335853 (-)
XLOC_026710 hs3st4 coding upstream 446871 44541322 ~ 44753325 (-)
XLOC_026711 usp31 coding upstream 1100768 45195219 ~ 45250924 (-)
XLOC_026712 kctd5a coding upstream 1166936 45261387 ~ 45281350 (-)
XLOC_026695 NA non-coding downstream 892535 43187194 ~ 43189085 (-)
XLOC_026694 NA non-coding downstream 1054885 43024821 ~ 43026735 (-)
XLOC_026691 CABZ01079183.1 non-coding downstream 1215420 42866083 ~ 42866200 (-)
XLOC_026716 NA non-coding upstream 1445335 45539786 ~ 45543451 (-)
XLOC_026719 NA non-coding upstream 1737626 45832077 ~ 45843700 (-)
XLOC_026722 NA non-coding upstream 2058676 46153127 ~ 46217473 (-)

Expression


Co-expression Network