LOC110532129 (LOC106572329)


Basic Information

Item Value
gene id LOC110532129
gene name LOC106572329
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 42425082 ~ 42431053 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615752.2
CACCGACTAGGATTAAGTGTGGGTAGGTAGTAGCAGGTAGCAAGTGAATGATTGGGATCCATTGGTTACTGTACATGTATTGTATGTCTCTGTGAAAGAGTACTGAAGTAAATGGAGAGGTTGGATGGTGGGGTTTTGCTAGCATCCTACTGAAGATGAAACATCAGTGACGTGAGAAGTTTGGGTTTTGTGGAACTTCTCTCAGCTGGAAAAGTGAGCATACTGAGTGGTAAGTCGGTTGCACTGTATTTATACAGTCAACAGGATTCTATCTATGAAAGTACATATTATCGCATTAGCACTTGGCATTGACAGTGTTCTGGCTTGTATTGCTATAGGCTACAATAGGCTTGTATTGCTATAGGCTTGTATTGCTACAGGCTACTATAGGCTTGATGCAACAAGCTTCTGTTTCAATGTCATGTTTTCTTTTGGAAAGACATTAACTACTGTTGTGTTAATCAGACGTTTTTTTTTATCCCCTAACCAATTTATCCTCACATGCCAAAGAATACTTAATTAGGAAATCTATTTGATTGAGGACAATTAGGATTCCATTGATAAAGACTGTAAGAGGTGCAACTAACTTTCATGTCATTTCCAGCCTGTCCAACTTTGGGCAAGAACACCAGACCAGCAAGATGAAGGTGAAATGGACCAAGTTAGGCATGGTGGTCTTTTTGCTGATATCCTTGGTCATGACGGGATGCTTTATTTGGCAGTACAGGATGCCAAAATTAAAAATAGGCAATGTTGTGAACATTGAGGTGAAGGAGGAAAAGTTGTGCCCTCGTTTCCCTGAGCCAGTACTCCTGGAACATCCCATCCCTGCACTCAAGGAAGCATTAGAAAAGATAGATGTTGTCCTAAGGTTAAGTATTCATGACACTACACTACCAGCTCTGTCTGCCATCGTTGTCTTCAACGACTCTGTGTTGTGGAACGGAAACTTTGGCAGAAGGAACGGGAGTGATCCCTCCTCGCCCCCACCCAATGAATACACGGTGTACAGAATTGCAAGTCTCTCAAAGATCTTCCCGACACTGATGCTGTACAAGCTTtgggaggaggggaaggtggcCTCCTTGGATGACCCTTTGGAGAAGTATGCGGCAAACTTCACCATCAAGAACCCGCTGGGGAAGCGGCGGGGAGTAGTGGATGTCAAGGCTGGTTCTGACAGAGATACCCAGCCACGCTCTCCCTCTGTCACCCTGCGCAGGATGGCCGGTCAGCTCTCTGGGTTACCCAGACGGCTTCGGTCAACAAATCTACTCTGGGGTGGAGACACAGAGGCTGCTATAGATCTATTACAGGATGATGTCCTGGTGGCAGACCCAGGCACCAAATGTCACTACAGCAACGTGGCCTTCTCTTTATTGGCTAATGTCTTGGCCGAGAACTTTGCAAAATCCGACTACGAGAGCTGGGTGTCCGACAACATCCTGGAGCAGCTGGGGATGGAGGACACAGGCTTTGATATAACCCCAGCCATTCAGAGCCAGATGGCAGTGGGCGTGTACAGCAGCGGCCAATCGGCACCCCTCTACGACCTGGGCTGGTATCGGCCCGCTGGCCAGATGTACTCCACGGCGGCCGACATGGCCAAACTAGCCATGGTGCTTCTGGGGGCTTACAGCCGGCCCCTCCTCCAACATGACACCCTGAAGACCCTGCTGACCCCTCTGTTTCGCTGCCACCAGGGCTACTTCGCCAACTACACCGGCACACCCTGGGAGGTCAACGAGCAGCTGGGCTACGAGGTGGTTCGTAAGGACGGAGACCTGGACGGCTACGCCACCACCTTCTCCCTGGTTCCTCGACTGAAGCTGGGCCTGGTGGTGCTGATGGCCGGGGTGAGGCCGCCAATAATGGACGGGGATCTGGTCACTCAGGCCTACAGCCATCTCATCCCAGCCATGGAGAGCGCTTTCAGGAATGCACAGCGCAAGCTCTCGCCGCCGCCCGACCCCACGCCCTATGTGGGTCTCTTCACCTACCAGAACATGACCTTCTATGAGATAAAGGCGAGTTTGGGCGGGGTGCTGGtcatgcagcagtttgggccccAGGTGGACACCATGATGCTGGCCAAGTACAGGACTATCAGGCTGGACTTCCTGCAGGAGAGGGTGTTCAGGGTAGTGTTCGAGGGGGAGTACCCCTGCAAGCTGAAGGTCAACAGCATCTCAGTGTCTCTGGAGACCCAGGACAGGCAACTCTTTAACTTCTATTATTTCAACAAGAAGGGCGTGTCGCCTGGATTCGACTCTCCTGGGCTCAACACTTACAAAGTGCTCCGGATAGCTCGACGGCCAATCTTCAACAGTTAAACCCTGAACTGTTTTTATTGTATGGAATCACAGATGGAATTCTGGATTTTAAGTGGATCATTTCAGAGCCTGAACAGTATGCAGAGACTTTGGAATTTAAATTTTTCTACCCTTTCAAAtgcttatttttttttatgtgtatGACGTGAATGAGTAAATTGTTGTTTTTCCTACAGTGAATGTCAGAGGGCCTTGTTATTGTGTTCTGTAAAGTAGTGCAATTGTAAGTCGTTTTATAATTCTCTTATCTTCAATGTCAATTGTCTTCCATGCAAATATCATGCTGTCTCTTGCGTGAAGTTATTCTTATTGAATGATGCATCATTAAGGTTACATGAAGGTTAAATTAAATGGGTGCGTTATATTGTTTGTTATACTGTGGTGACACATTCTTTCTGTTACCTTGTTACTTCAATGAAAGAAGCTGTCGTCACGATGATAGGTATTTGTCTCACAACAAAATATGACTGTGGTGAAAATTCTGTAAGCTAATGTCCACTTTTCTCACTTTTAATTCATTTAAGTGCCTCAAATGACCTTGGGAAAGAAAATCCTGTTGTCTAAATGTTTTGTCTCCACATTTTAGATGGCAAGTGCAGAGCTCCCTGGCCTAAAGGAAAACTCCATCCAAAAACGATATTTGTGGATTTGTTTtgttagtccattgttgatatagtcccaaaatgttttgcatgtcaggaAAACAagtttcaagatatgtaactttcaaaatacaataATACTGCATTCATACAACGCAATTATACAAAATTGAGTAGAGTCCATATGCtgtcaacacaaataaactaaaagaataaaagaaacgtc

Function

NR:

description
putative beta-lactamase-like 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615752.2 True 3161 mRNA 0.46 6 42425082 42431053

Neighbor

gene id symbol gene type direction distance location
LOC110532123 LOC106572239 coding upstream 178656 42237344 ~ 42246426 (+)
LOC110532122 LOC106572240 coding upstream 188443 42209835 ~ 42236639 (+)
LOC118966050 NA coding upstream 245761 42160412 ~ 42179321 (+)
LOC110532121 LOC106572248 coding upstream 300213 42118391 ~ 42124869 (+)
LOC110532118 LOC106566808 coding upstream 325133 42094188 ~ 42099949 (+)
glut1b LOC106572233 coding downstream 86093 42496861 ~ 42529048 (+)
trappc6b trappc6b coding downstream 109968 42541021 ~ 42546531 (+)
tpx2 LOC106572230 coding downstream 115792 42546845 ~ 42556493 (+)
LOC110532135 LOC106566930 coding downstream 132355 42563408 ~ 42565334 (+)
LOC110532136 LOC106572228 coding downstream 140759 42571812 ~ 42596697 (+)
G805640 NA non-coding upstream 23451 42401314 ~ 42401631 (+)
G805638 NA non-coding upstream 26227 42398645 ~ 42398855 (+)
G805601 NA non-coding upstream 79243 42345601 ~ 42345839 (+)
G805423 NA non-coding upstream 134082 42289554 ~ 42291000 (+)
G805422 NA non-coding upstream 135534 42289290 ~ 42289548 (+)
G805673 NA non-coding downstream 26577 42457630 ~ 42457832 (+)
G805694 NA non-coding downstream 101329 42532382 ~ 42579499 (+)
G805749 NA non-coding downstream 183807 42614860 ~ 42615200 (+)
G805779 NA non-coding downstream 230762 42661815 ~ 42664451 (+)
G805600 NA other upstream 76296 42346176 ~ 42348786 (+)
G805451 NA other upstream 92644 42332093 ~ 42332438 (+)
LOC110532114 LOC106572334 other upstream 400679 42021496 ~ 42027071 (+)
LOC110532096 LOC106572259 other upstream 989659 41423598 ~ 41452922 (+)
G803728 NA other upstream 1403580 41020936 ~ 41021502 (+)
G807677 NA other downstream 1764662 44195715 ~ 44196041 (+)
G807841 NA other downstream 2011609 44442662 ~ 44453077 (+)
G809685 NA other downstream 3703678 46134731 ~ 46135732 (+)
G812143 NA other downstream 5550948 47982001 ~ 47982301 (+)
G812688 LOC106572106 other downstream 6114401 48545454 ~ 48570593 (+)

Expression


Co-expression Network