Gene
RNA
| Item | Value |
|---|---|
| gene id | trappc6b |
| gene name | trappc6b |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048573.1 |
| NCBI id | CM023227.2 |
| chromosome length | 79455637 |
| location | 42541021 ~ 42546531 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| trappc6b | Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within Golgi vesicle transport; nervous system development; and regulation of GTPase activity. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Predicted to be part of TRAPP complex. Predicted to be active in cis-Golgi network and trans-Golgi network. Is expressed in central nervous system. Used to study syndromic intellectual disability. Orthologous to human TRAPPC6B (trafficking protein particle complex subunit 6B). |
| description |
|---|
| PREDICTED: trafficking protein particle complex subunit 6B |
| id | description |
|---|---|
| K20304 | TRAPPC6, TRS33; trafficking protein particle complex subunit 6 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021615761.2 | True | 1100 | mRNA | 0.38 | 6 | 42541021 | 42546531 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| glut1b | LOC106572233 | coding | upstream | 11973 | 42496861 ~ 42529048 (+) |
| LOC110532129 | LOC106572329 | coding | upstream | 109968 | 42425082 ~ 42431053 (+) |
| LOC110532123 | LOC106572239 | coding | upstream | 294595 | 42237344 ~ 42246426 (+) |
| LOC110532122 | LOC106572240 | coding | upstream | 304382 | 42209835 ~ 42236639 (+) |
| LOC118966050 | NA | coding | upstream | 361700 | 42160412 ~ 42179321 (+) |
| tpx2 | LOC106572230 | coding | downstream | 314 | 42546845 ~ 42556493 (+) |
| LOC110532135 | LOC106566930 | coding | downstream | 16877 | 42563408 ~ 42565334 (+) |
| LOC110532136 | LOC106572228 | coding | downstream | 25281 | 42571812 ~ 42596697 (+) |
| LOC110533013 | LOC106566826 | coding | downstream | 105601 | 42652132 ~ 42689483 (+) |
| LOC110532140 | LOC106566931 | coding | downstream | 143762 | 42690293 ~ 42695335 (+) |
| G805673 | NA | non-coding | upstream | 83189 | 42457630 ~ 42457832 (+) |
| G805640 | NA | non-coding | upstream | 139390 | 42401314 ~ 42401631 (+) |
| G805638 | NA | non-coding | upstream | 142166 | 42398645 ~ 42398855 (+) |
| G805601 | NA | non-coding | upstream | 195182 | 42345601 ~ 42345839 (+) |
| G805749 | NA | non-coding | downstream | 68329 | 42614860 ~ 42615200 (+) |
| G805779 | NA | non-coding | downstream | 115284 | 42661815 ~ 42664451 (+) |
| G805781 | NA | non-coding | downstream | 119238 | 42665769 ~ 42665983 (+) |
| G805786 | NA | non-coding | downstream | 131005 | 42677536 ~ 42677836 (+) |
| G805788 | NA | non-coding | downstream | 132613 | 42679144 ~ 42679349 (+) |
| G805600 | NA | other | upstream | 192235 | 42346176 ~ 42348786 (+) |
| G805451 | NA | other | upstream | 208583 | 42332093 ~ 42332438 (+) |
| LOC110532114 | LOC106572334 | other | upstream | 516618 | 42021496 ~ 42027071 (+) |
| LOC110532096 | LOC106572259 | other | upstream | 1105598 | 41423598 ~ 41452922 (+) |
| G803728 | NA | other | upstream | 1519519 | 41020936 ~ 41021502 (+) |
| G807677 | NA | other | downstream | 1649184 | 44195715 ~ 44196041 (+) |
| G807841 | NA | other | downstream | 1896131 | 44442662 ~ 44453077 (+) |
| G809685 | NA | other | downstream | 3588200 | 46134731 ~ 46135732 (+) |
| G812143 | NA | other | downstream | 5435470 | 47982001 ~ 47982301 (+) |
| G812688 | LOC106572106 | other | downstream | 5998923 | 48545454 ~ 48570593 (+) |
