tpx2 (LOC106572230)


Basic Information

Item Value
gene id tpx2
gene name LOC106572230
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 42546845 ~ 42556493 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615760.2
AAAATGTGTAAACCCCGCTTAAACCCCGGGCCATCCAAAACGAACTCGTGCTGATAGGTTTTTGCTGATAGCTGTTTTTTGGGGGAATTTTAAATTATAATTACTCATGTGGGTTTCTTATCTAGATACATTAGTTGACTCtgggtaagagtgtctgctaaattagtAAAATGTAGTTACATGAAAATGTAAGAATGTGGGCATTCAGAATTGTTACAGAAAGTCCTCACGTGGCAGGAAATATAATTTGAGTATGCCGTAATCCAGGCACGTTGAGCCAATGGAAAACCAATTGCTCTGGAAGAGGCTGTTGATTGGCTGGTTCAAATGGGGAGGAAATTTAAACGGTAACGCCAAACCTTATTTTGTTATTTCAGCACTGAAGCTAACTGACGGCTCAAGGGATTGCCACTACGGCTTGGTTGTGTTTCTAAAACACGCGTTTAAAAGGAGAGCAGCTACAGACAGCTGCTGAAATGGCTGGTGAGATGGCGCAGGGTGAATCGGCAAGTCACTACGAATTTGATGCACCGTCACATGTAATTGATTTCAAAGCATTGGATACGGAGGACAACGCAGATATTTGGTTTGACCAATGTGCTGGCCAGGATGGTGGAATGTTTGGCCACCTTGCCACCCCAAACAGAAATGATATGCCATTTGGAATGACCCCTAAAACACACTTGCCCAGGGTGATTGTATCTCCCAGGGTGAAGGACAACTCTAACTCAGAGGCCCCAAGCACTTCCTCGGGACCCACCACAGCAGATTCCCCGAGCATGTCCTCAGCTACCCTCCCCAACATTGTCACCTCCTGGGGAAATAAGCCAGCTCCGGTAGCTGCCCTGCCAAAAAGGAAGGGACCCCCTGCCCAACCGCGCAGGGTGTCAAAGCGCAAAGAGGCAGCCTGCAATGAGGAAGGACGGCACACCGCCCCTCAAGTGCCACCACCTGTCAAGAAGCAGAGAAGGAGCTCATCTCTGCCCCCCAGGCGCAGTCTTAGTGGCCGCACCACCGTGCGACTCAACCCCAGAGCAGCCACGCAGGCCCGGCACGTTGCAGcagcccccaccaccacacaGCATAAGAGCTCTGAGCAGCAGGAGATGGAGCGCATCAAGACTCTTCAGAAGGAAGTGGCTGACCAGCGGAAGAGGAACGAGGCCAGTTACAGGGCTGCAATGGCAGGCAGTCAGCCCCCTAAGAAGCTGGCTCTGGCCACCACCGTACCCAAAGAGTTCAACTTCAGCACAGATGGACGTGTCAAGGTTGGCACCTTGCCACAGCACAAGGAGATGGACTTCACCGCTCAGCTCCGCAAGCACCCATCCTCCCCCGCCAAGGCACCAAATGGTACCACTGTGCCCAAGCCCTTTAACCTGTCTACTGGCAGCAAGAGGAAGCTGGAGGACCCTGCCCCCTACGTGCCCATGGCCCAGCAGATTGAGCAGTTTCAGAGACGGACTCCAACCCGCTACCACCTTCGCAGTCGACAGAGCCACGAGAGGGGCCCGTCACCTGTGAAGAGTGAGCAGCTGAAGATCACCCACCCTCACACCCCTCTGCTGATGACCCGGCAGAGGCGCCGACCCACGGCAGTCAAGAGCAGTGCTGAGCTTGAGGCTGAGGAACTCCAGAAACTCCAACAGTTTAAGTTCAAGGCCCTGGAGCTGAACAGGAAGATCCTAGAGGGGGCGCTGAATCCCAAGAAGCCCTTGGTGAAGGAGTCCACGCGGCCGGAGGGCTTCCATTTGCACATGGACAAGAGGCTGACGGATCGAAATGCCAGTAAGAAGCCGGAGGAGCCCGAGGAGCAGCACACCTTCCACTCCCGCCCGCTGCCCGTTAGGATcctagaggaggtggtgGGTGTCCCGGAGAAGAAGGTGCTATGtcccactgttccagagtccccTGCATGGGCCCTGAAGAAGAGGGTGCGCATAGACAGAAAGGTGGAGGAGGTAAAACCCCCGGCCCCGCTCAAGGCCCACGCGGCGCCCCACTTTGGCCTGCCCTTCCAGCCTAAGCTCCAGGACAAGACCCATATGGACGTGTGCCCCTTCTCCTTTGAAGAGCGGGAGTGTGAGAGAAGGCTGCTGAAAGAGAAGAGGCTGGAGGAGCTTAGGCATGAAGAGGTGCCAAAGTTCAAGGCCCAGCCGCTGCCGGACTTCCATGAGGTGGTCCTGCCAGAGAAGAAGGTGGCTGAGCCCACCAAGCCTGAGCCCTTCAAGCTGCTCATTGACGAGCGGGGAGCTGTCAAGCACGACCGCTGGGAGCAGATGGTGAAGGAGGAACAGAAGCACCAGGCGGAGGCAGCCACCTTCAAAGCTCGACCAAATATGGTCACTCACAAAGAGCCGTTCCTCCCCAAGAAAGAGAACCGCTCTGTCCTGGAAGACATGAATAATTCCGTAGTTCCAGAGGGCTTCCAGCTGTCTACAGAGCGCCGCGCCAAGGAGCGGCTGGAGTTTGACCGGGCGGTGAGTGAGAAGGAGGTGCTGAGGGCTCGCATGGAGGAGGAACAGCGCAGGGAGCAGGAGGAGCGTGAGAAGGAGGACATGGCCAGGCTACGCCTGGAACAGGTCCACAAAGCCCAACCTGTCAGACGTTACAAACAGCTGGAGCTGAAGAAGAGTGACGTCACACTCACTGTGCCCCAGTCTCCCAACTTTTCTGATCGCTTCCGCATGTGATGGATGAGAAGGGATTTAGTTGTGTATATTATATAAACACTTCATTTAGTTCTATGCCgcttctgtttttattttattggtTTGAACCTTCGGCTTTAAATTTCTCTGGAAAAACCTGACTACTCGTTCCCACTATGGCCTGTACATTACTTGCTTGTTCTGACTTGCTGTCGCTTTGCTTTCGATTATGTCTAATAAAGTCATGTTCTTAATGTCTTAACCTTTTAAAACACCAGGCTTTAAATTCATAATCTCTCTTTGAAGTCTTACCTGTATTTAATTTCCTGACATGAATGTAGTCTTGACTGTCTCTGCATTTTGCAGCAGCTTTCTGCCAATAAAAATCGACTACAATGTT
>XM_021615759.2
AAATGTGTAAACCCCGCTTAAACCCCGGGCCATCCAAAACGAACTCGTGCTGATAGGTTTTTGCTGATAGCTGTTTTTTGGGGGAATTTTAAATTATAATTACTCATGTGGGTTTCTTATCTAGATACATTAGTTGACTCtgggtaagagtgtctgctaaattagtAAAATGTAGTTACATGAAAATGTAAGAATGTGGGCATTCAGAATTGTTACAGAAAGTCCTCACGTGGCAGGAAATATAATTTGAGTATGCCGTAATCCAGGCACGTTGAGCCAATGGAAAACCAATTGCTCTGGAAGAGGCTGTTGATTGGCTGGTTCAAATGGGGAGGAAATTTAAACGGTAACGCCAAACCTTATTTTGTTATTTCAGCACTGAAGCTAACTGACGGCTCAAGGGATTGCCACTACGGCTTGGTTGTGTTTCTAAAACACGCGTTTAAAAGGAGAGCAGCTACAGACAGCTGCTGAAATGGCTGGTGAGATGGCGCAGGGTGAATCGGCAAGTCACTACGAATTTGATGCACCGTCACATGTAATTGATTTCAAAGCATTGGATACGGAGGACAACGCAGATATTTGGTTTGACCAATGTGCTGGCCAGGATGGTGGAATGTTTGGCCACCTTGCCACCCCAAACAGAAATGATATGCCATTTGGAATGACCCCTAAAACACACTTGCCCAGGGTGATTGTATCTCCCAGGGTGAAGGACAACTCTAACTCAGTAGAGGCCCCAAGCACTTCCTCGGGACCCACCACAGCAGATTCCCCGAGCATGTCCTCAGCTACCCTCCCCAACATTGTCACCTCCTGGGGAAATAAGCCAGCTCCGGTAGCTGCCCTGCCAAAAAGGAAGGGACCCCCTGCCCAACCGCGCAGGGTGTCAAAGCGCAAAGAGGCAGCCTGCAATGAGGAAGGACGGCACACCGCCCCTCAAGTGCCACCACCTGTCAAGAAGCAGAGAAGGAGCTCATCTCTGCCCCCCAGGCGCAGTCTTAGTGGCCGCACCACCGTGCGACTCAACCCCAGAGCAGCCACGCAGGCCCGGCACGTTGCAGcagcccccaccaccacacaGCATAAGAGCTCTGAGCAGCAGGAGATGGAGCGCATCAAGACTCTTCAGAAGGAAGTGGCTGACCAGCGGAAGAGGAACGAGGCCAGTTACAGGGCTGCAATGGCAGGCAGTCAGCCCCCTAAGAAGCTGGCTCTGGCCACCACCGTACCCAAAGAGTTCAACTTCAGCACAGATGGACGTGTCAAGGTTGGCACCTTGCCACAGCACAAGGAGATGGACTTCACCGCTCAGCTCCGCAAGCACCCATCCTCCCCCGCCAAGGCACCAAATGGTACCACTGTGCCCAAGCCCTTTAACCTGTCTACTGGCAGCAAGAGGAAGCTGGAGGACCCTGCCCCCTACGTGCCCATGGCCCAGCAGATTGAGCAGTTTCAGAGACGGACTCCAACCCGCTACCACCTTCGCAGTCGACAGAGCCACGAGAGGGGCCCGTCACCTGTGAAGAGTGAGCAGCTGAAGATCACCCACCCTCACACCCCTCTGCTGATGACCCGGCAGAGGCGCCGACCCACGGCAGTCAAGAGCAGTGCTGAGCTTGAGGCTGAGGAACTCCAGAAACTCCAACAGTTTAAGTTCAAGGCCCTGGAGCTGAACAGGAAGATCCTAGAGGGGGCGCTGAATCCCAAGAAGCCCTTGGTGAAGGAGTCCACGCGGCCGGAGGGCTTCCATTTGCACATGGACAAGAGGCTGACGGATCGAAATGCCAGTAAGAAGCCGGAGGAGCCCGAGGAGCAGCACACCTTCCACTCCCGCCCGCTGCCCGTTAGGATcctagaggaggtggtgGGTGTCCCGGAGAAGAAGGTGCTATGtcccactgttccagagtccccTGCATGGGCCCTGAAGAAGAGGGTGCGCATAGACAGAAAGGTGGAGGAGGTAAAACCCCCGGCCCCGCTCAAGGCCCACGCGGCGCCCCACTTTGGCCTGCCCTTCCAGCCTAAGCTCCAGGACAAGACCCATATGGACGTGTGCCCCTTCTCCTTTGAAGAGCGGGAGTGTGAGAGAAGGCTGCTGAAAGAGAAGAGGCTGGAGGAGCTTAGGCATGAAGAGGTGCCAAAGTTCAAGGCCCAGCCGCTGCCGGACTTCCATGAGGTGGTCCTGCCAGAGAAGAAGGTGGCTGAGCCCACCAAGCCTGAGCCCTTCAAGCTGCTCATTGACGAGCGGGGAGCTGTCAAGCACGACCGCTGGGAGCAGATGGTGAAGGAGGAACAGAAGCACCAGGCGGAGGCAGCCACCTTCAAAGCTCGACCAAATATGGTCACTCACAAAGAGCCGTTCCTCCCCAAGAAAGAGAACCGCTCTGTCCTGGAAGACATGAATAATTCCGTAGTTCCAGAGGGCTTCCAGCTGTCTACAGAGCGCCGCGCCAAGGAGCGGCTGGAGTTTGACCGGGCGGTGAGTGAGAAGGAGGTGCTGAGGGCTCGCATGGAGGAGGAACAGCGCAGGGAGCAGGAGGAGCGTGAGAAGGAGGACATGGCCAGGCTACGCCTGGAACAGGTCCACAAAGCCCAACCTGTCAGACGTTACAAACAGCTGGAGCTGAAGAAGAGTGACGTCACACTCACTGTGCCCCAGTCTCCCAACTTTTCTGATCGCTTCCGCATGTGATGGATGAGAAGGGATTTAGTTGTGTATATTATATAAACACTTCATTTAGTTCTATGCCgcttctgtttttattttattggtTTGAACCTTCGGCTTTAAATTTCTCTGGAAAAACCTGACTACTCGTTCCCACTATGGCCTGTACATTACTTGCTTGTTCTGACTTGCTGTCGCTTTGCTTTCGATTATGTCTAATAAAGTCATGTTCTTAATGTCTTAACCTTTTAAAACACCAGGCTTTAAATTCATAATCTCTCTTTGAAGTCTTACCTGTATTTAATTTCCTGACATGAATGTAGTCTTGACTGTCTCTGCATTTTGCAGCAGCTTTCTGCCAATAAAAATCGACTACAATGTT

Function

NR:

description
targeting protein for Xklp2-like isoform X1

GO:

id name namespace
GO:0005819 spindle cellular_component
GO:0005874 microtubule cellular_component

KEGG:

id description
K16812 TPX2; targeting protein for Xklp2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615760.2 False 3054 mRNA 0.53 16 42546845 42556493
XM_021615759.2 True 3056 mRNA 0.53 16 42546846 42556493

Neighbor

gene id symbol gene type direction distance location
trappc6b trappc6b coding upstream 314 42541021 ~ 42546531 (+)
glut1b LOC106572233 coding upstream 17797 42496861 ~ 42529048 (+)
LOC110532129 LOC106572329 coding upstream 115792 42425082 ~ 42431053 (+)
LOC110532123 LOC106572239 coding upstream 300419 42237344 ~ 42246426 (+)
LOC110532122 LOC106572240 coding upstream 310206 42209835 ~ 42236639 (+)
LOC110532135 LOC106566930 coding downstream 6915 42563408 ~ 42565334 (+)
LOC110532136 LOC106572228 coding downstream 15319 42571812 ~ 42596697 (+)
LOC110533013 LOC106566826 coding downstream 95639 42652132 ~ 42689483 (+)
LOC110532140 LOC106566931 coding downstream 133800 42690293 ~ 42695335 (+)
foxp3-1 foxp3-1 coding downstream 142458 42698951 ~ 42747753 (+)
G805673 NA non-coding upstream 89013 42457630 ~ 42457832 (+)
G805640 NA non-coding upstream 145214 42401314 ~ 42401631 (+)
G805638 NA non-coding upstream 147990 42398645 ~ 42398855 (+)
G805601 NA non-coding upstream 201006 42345601 ~ 42345839 (+)
G805749 NA non-coding downstream 58367 42614860 ~ 42615200 (+)
G805779 NA non-coding downstream 105322 42661815 ~ 42664451 (+)
G805781 NA non-coding downstream 109276 42665769 ~ 42665983 (+)
G805786 NA non-coding downstream 121043 42677536 ~ 42677836 (+)
G805788 NA non-coding downstream 122651 42679144 ~ 42679349 (+)
G805600 NA other upstream 198059 42346176 ~ 42348786 (+)
G805451 NA other upstream 214407 42332093 ~ 42332438 (+)
LOC110532114 LOC106572334 other upstream 522442 42021496 ~ 42027071 (+)
LOC110532096 LOC106572259 other upstream 1111422 41423598 ~ 41452922 (+)
G803728 NA other upstream 1525343 41020936 ~ 41021502 (+)
G807677 NA other downstream 1639222 44195715 ~ 44196041 (+)
G807841 NA other downstream 1886169 44442662 ~ 44453077 (+)
G809685 NA other downstream 3578238 46134731 ~ 46135732 (+)
G812143 NA other downstream 5425508 47982001 ~ 47982301 (+)
G812688 LOC106572106 other downstream 5988961 48545454 ~ 48570593 (+)

Expression


Co-expression Network