LOC110533013 (LOC106566826)


Basic Information

Item Value
gene id LOC110533013
gene name LOC106566826
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 42652132 ~ 42689483 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110533013
AGGCTGCCCGTTCCCACAGTTCCAAGAACAGTCAGAAACGTCCAGCAAACCCTAAGCCAATGGAGCTCAAATCTGAACTTGGATCCGATGATATTTATTcgttttatttaatctttatataACTAgtgaagtcagttaagaacgaattcttatttacaatgacgacctaggaacagtgggttaactgccttgttcaggggcagaacgacagatttttaccttgtcactcggggattcgatctagcaacctttcggttactggcctaaccacaaggctaccttcGCCACTGTCGTTCTCCAACCAATCATGACGCTTCAtcaaaacaatacaacaataaATAATtttaataCCGACTGGGATGGGCAGATCTCTAATACCGACTGGGATGGGAAGATCAACAGGTGCAGCCAATGGACAGGTCTCTTGTCCTCTGTGAAAGACCTGGGCTCAGTGGCAGCGGGTCTATATGCCCTCTACCTGTTCTTTGAGCAGTCCATGGTGTGGGAGTTACTGCTCAGTCTGCTCTGCTACTCTGCCTTGTTCCTCAACCGCTACTTCAGCAGCCGAAGAATCTTCCTCTCCGCCACTATCCTCATCTATCTACTCATGGGGGAGCTGCATATGATTGACACAGTGACCTGGCATAAAATTAGAGGTTCTCAGATGGTGTTGGCCATGAAGGGCATTTCTCTGGCCTTTGACCTGGACAGAGGCACCGTGCCTGCTGTTCCCAATTCTCTGGAGTTCACAGGCTACATTCTCTTTGTGGGCACTGTCATCTTTGTGCCCTGGGTCAGCTACTCAAGCTACAAAGAGGCCATTGAGAGGCACAAGCTGACTTTGGCCTGGCTCCAGACGTTTTCAGTGAGCTGGGTAAAATGCCAGCTGTGCTTGGTGATATCCAACTGCATTGCCCCATACCTCTTCCCCTACTTCATTCCAATCCACGGGGGCGGAGGACTGAGCACGTGGCTCCACGCCTATGAGAATGCCATATCCTTCCACTTCAGGAACTACTTTGTTGGCCACCTTAGAGAAAGTACAACTGTGCTAGCAGGAGTAGGTTTTACTGAAGACAAGGACAATGTTAAATGGGATCTGAAAGTGGTTAAGCCTCTCAATGTGGAGTTGCCCAGGTCCATGGTGCTAGTGGTGACCTCCTGGAACATCCCATGTCTCGCTGGCTCAACATATATGTTTTAAAAAATGCGTTGAAACTTGGCACATTTCCTTACATCATTGTGACTTACACAGCCAGTGCCTTGCTACACGGCCTGAGTTTCCATCTTGGGGCCGTGCTGCTGTCTCTGGGCTTTATCACTTATGTGGAACATGTTCTGAGGGAGAGGCTGGCAGCCATTTTTAGCGCCTGTATCCTGTCCAAACAGTGTCCCACCAATTGCTGCCATCAGCACCAGAAGGAGCTATGGGTGTATGGGATTAACATGACCTTCAGTGCCATGGCCATCTTCCATCGGACATACCTGGACTCCCTGTTTGACACTGACATAGAAAACTTGGCTGCAGAGGAGggtTATGTGGCCAACCACAGCATTCAGAAGTGGTCAGAGTTGAGCTGGGCCAGCCACTGGCTGGTCTTCGCCTGCAGGGTATTCTACCGCCTCATTCAGTGATCTCATTTGACGGAAGGTCTGGACTGAACAGAAGACAATAGCCTGGTTCAAAAAGAACCCTTAGCTCACGGGTGGGCCATCTTACCTGGTATGGGCTGGTGTGGGTGAAGACTTAATGGACACAGAGTAGCTTAGTGTGGGGCCAGGATGATTGTCCCACTCCATCATGATTGGAAGAATGCTGCTTTGTTTACCGGGGTCTTGCTGTATTTGTTTGTTTGGTAAACACTTAATAACCAGTCACTCACTAGTTCAATGCCATGATGTATCAAACTATTGAGATTGAGAACCAGCAGTAGGCTGAAGATTCATCAGTGGTTTCTGTAAAGGCTACTGTTCTTTCAGGGCTTTGTAGTTTGATCACACACAATGCTATAGGAATATTGATGTATCTGTGTATATCAGTAGCACTatgatttctttttttttcttcattatgAT

Function

NR:

description
protein-serine O-palmitoleoyltransferase porcupine-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110533013 True 2076 mRNA 0.47 13 42652132 42689483

Neighbor

gene id symbol gene type direction distance location
LOC110532136 LOC106572228 coding upstream 55435 42571812 ~ 42596697 (+)
LOC110532135 LOC106566930 coding upstream 86798 42563408 ~ 42565334 (+)
tpx2 LOC106572230 coding upstream 95639 42546845 ~ 42556493 (+)
trappc6b trappc6b coding upstream 105601 42541021 ~ 42546531 (+)
glut1b LOC106572233 coding upstream 123084 42496861 ~ 42529048 (+)
LOC110532140 LOC106566931 coding downstream 810 42690293 ~ 42695335 (+)
foxp3-1 foxp3-1 coding downstream 9468 42698951 ~ 42747753 (+)
LOC110532144 LOC106572221 coding downstream 63793 42753276 ~ 42867302 (+)
LOC110532147 LOC106572219 coding downstream 213613 42903096 ~ 42911687 (+)
LOC110532148 LOC106572218 coding downstream 222900 42912383 ~ 42930990 (+)
G805749 NA non-coding upstream 36932 42614860 ~ 42615200 (+)
G805694 NA non-coding upstream 72633 42532382 ~ 42579499 (+)
G805673 NA non-coding upstream 194300 42457630 ~ 42457832 (+)
G805640 NA non-coding upstream 250501 42401314 ~ 42401631 (+)
G806141 NA non-coding downstream 195202 42884685 ~ 42885267 (+)
G806227 NA non-coding downstream 230049 42919532 ~ 42920390 (+)
G806243 NA non-coding downstream 280292 42969775 ~ 42970005 (+)
G806244 NA non-coding downstream 281030 42970513 ~ 42970739 (+)
G806245 NA non-coding downstream 281340 42970823 ~ 42971089 (+)
G805600 NA other upstream 303346 42346176 ~ 42348786 (+)
G805451 NA other upstream 319694 42332093 ~ 42332438 (+)
LOC110532114 LOC106572334 other upstream 627729 42021496 ~ 42027071 (+)
LOC110532096 LOC106572259 other upstream 1216709 41423598 ~ 41452922 (+)
G803728 NA other upstream 1630630 41020936 ~ 41021502 (+)
G807677 NA other downstream 1506232 44195715 ~ 44196041 (+)
G807841 NA other downstream 1753179 44442662 ~ 44453077 (+)
G809685 NA other downstream 3445248 46134731 ~ 46135732 (+)
G812143 NA other downstream 5292518 47982001 ~ 47982301 (+)
G812688 LOC106572106 other downstream 5855971 48545454 ~ 48570593 (+)

Expression


Co-expression Network