LOC110532140 (LOC106566931)


Basic Information

Item Value
gene id LOC110532140
gene name LOC106566931
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 42690293 ~ 42695335 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615779.2
TTTAGGCAATCATTACTCACTGCTATCGGAAAGGAATTGTTCAGACAATGATGCCACCTCAACACGGAACTGACAAGACACTCACCAAGTGTCTGTCTTTGGAGAACAGAAAAACAATCAGTCTTTCTATAGGAGGAACTGTACTCCctgagaagatgagaggagacaaCTGCAGCTGGTTAGGAGCAGAGATCCCACTGTCATGGGAGTTGTTCAGGGtggtcAAGGATGAGCTCTGGTTGTTTATCATTCCTGCCGGATTTGCTGTGATCATTCTGGCCCTGTTCCTAGAAGAGGTGGGCTTCTTCCTGCGTCACGTGCCCTCTTCCAGACGTCGGTGCCTCTACCTGTGGATACTGGGCATGTACCCGGTCTTTGGATTAACCTCCATCATTGCACTGTATGTTCCTCGCTCCTCCTCACTTTGTAATTTCATAGCTTCTCTGTACCACTCAATCACTCTGCTAAAGTTCATGGGGCTCATCACAGACTTCTTTGGGGGAAAGGCCCGCATGCTGGAGATCTTAGCTGGAGAGCAGGGTTCTCCAGATCCATTcccatgttgctgctgctgttgcctcCCTATGATAGCGATCAACAGGACCAGCCTGGGGTGGATGATGGCTGCTGTGCTTCAACTGTCTGTGGTCAGAACCATCCTATTCTTTGTCACTCTGGTCCTCTGGACAGATGAGCAGTATGACTATGGACATGTGGATTCTGTCAATCCCAATGTGTACGTGAATGCCATCATAAGCGTGTCTACCTTCCTGTCTTTCTATGGCCACTTGCTGTTTTACAAGGCCACCAAAAAGGCTCTGCCTGGCTATGGGCTGAGGGCCAAGTTTGTCTGTATCATTGTAGTGTTGGTGCTGTGTGGCCTTCAGAATGGAATCCTGGAGACCATGGGGGCCCTGGAGGTGGTGCCCTgctcccctcccttctctgttCTCATGCGTTCCCAGCtaATTTACCACTACTCTGTGATTGTGGAGATGTTCTGCATATGCCTCTTTGCCCGCCACACGTTCCGTAAGGTGGAGCCCAGTCCGGAGGAGGCCTTTGGGTTGGAGGAGAGGCCCCACAGAGGCATGCTACTGGAGAAGGCAGTTCAGACTGAGGACGTGGTGCCACTCAGGGAGAACCCCTGGCCTGGCTGGTGCGGCGCTGGTGTCTCCAATCCCGACTATAACAGTGACAGCAGTGAGGACAGCCTCTGTAAGGTCGAACACGCCTCCCTGGATCGCTTCCCTTTCCCTCTTCAACCCAGACGTCAAAAGATGATGCCAGAGAAGGTAACTGATGAAAGTGCCACTTTGGAGCTGTCCAAACTGACTGTTACTGCGGACATCAACTTTGTGGAGTCTAGGAATGTTACTGTTGTATGACAAATGGAATGGATTGTCCTGGAATCTCCTAACAGGACAGCAACACGGGTCAACCTCCAGGAAATGGAAGAGAAACACCACACCGCTTGAGGTAGTACCTTgcccagtttttatttttatgtatattGACTGAGATCATGCATTTATTCATTCATCAGTTGAATGAAGATGGTAGCTAATGGATATTTTTGTTCTACCCATAATTTCTTGCCTACATTTTATATCGAGCATGCTCAGTACATTTTGTTTTGCAATGTTTCTCAAAAAGccagtacattttttaaaagccTATTGCACAATACTTTCAGAGGTATTTATCAGTTTCTCATGCCTTCTCTCAAAACTTACAATAAACCTTTGGAGTTTGAAATGAATTTGATGACCTTAATGGGTACATTTCATGTAATATTGAATACAAAGTAAACACTAATAGAATCTGTTCCTTGGAGTAGATGGTATTTGCTCCATGAGCTTCTCAAACCACACAAACAGTATGCCTCTGGCCTAGCCTTCCCTCTGAAGTGCATTGATACCAAAGATAGGTCTCATATTGTAAACTAcaacataaaaaatattttaagtaGTTAACTCTGGCTTGGTGCTTGACTTGGGCCGGAGCGCTGTACCGGCACTACTAATTTTTGGGGAATTGCATACCGGATCTGCATTGAATAGAAATAGaataccacagtatgagtcataatacccatatccacggggaagtaggggtgctgccTCCCCCCACACTTTGATAACATTTGCAGAACCCCTATCCTtcaaactaaactcagcaaaaaaagaaacatccc
>XM_021615778.2
TTAGGCAATCATTACTCACTGCTATCGGAAAGGAATTGTTCAGACAATGATGCCACCTCAACACGGAACTGACAAGACACTCACCAAGTGTCTGTCTTTGGAGAACAGAAAAACAATCAGTCTTTCTATAGGAGTAGGAACTGTACTCCctgagaagatgagaggagacaaCTGCAGCTGGTTAGGAGCAGAGATCCCACTGTCATGGGAGTTGTTCAGGGtggtcAAGGATGAGCTCTGGTTGTTTATCATTCCTGCCGGATTTGCTGTGATCATTCTGGCCCTGTTCCTAGAAGAGGTGGGCTTCTTCCTGCGTCACGTGCCCTCTTCCAGACGTCGGTGCCTCTACCTGTGGATACTGGGCATGTACCCGGTCTTTGGATTAACCTCCATCATTGCACTGTATGTTCCTCGCTCCTCCTCACTTTGTAATTTCATAGCTTCTCTGTACCACTCAATCACTCTGCTAAAGTTCATGGGGCTCATCACAGACTTCTTTGGGGGAAAGGCCCGCATGCTGGAGATCTTAGCTGGAGAGCAGGGTTCTCCAGATCCATTcccatgttgctgctgctgttgcctcCCTATGATAGCGATCAACAGGACCAGCCTGGGGTGGATGATGGCTGCTGTGCTTCAACTGTCTGTGGTCAGAACCATCCTATTCTTTGTCACTCTGGTCCTCTGGACAGATGAGCAGTATGACTATGGACATGTGGATTCTGTCAATCCCAATGTGTACGTGAATGCCATCATAAGCGTGTCTACCTTCCTGTCTTTCTATGGCCACTTGCTGTTTTACAAGGCCACCAAAAAGGCTCTGCCTGGCTATGGGCTGAGGGCCAAGTTTGTCTGTATCATTGTAGTGTTGGTGCTGTGTGGCCTTCAGAATGGAATCCTGGAGACCATGGGGGCCCTGGAGGTGGTGCCCTgctcccctcccttctctgttCTCATGCGTTCCCAGCtaATTTACCACTACTCTGTGATTGTGGAGATGTTCTGCATATGCCTCTTTGCCCGCCACACGTTCCGTAAGGTGGAGCCCAGTCCGGAGGAGGCCTTTGGGTTGGAGGAGAGGCCCCACAGAGGCATGCTACTGGAGAAGGCAGTTCAGACTGAGGACGTGGTGCCACTCAGGGAGAACCCCTGGCCTGGCTGGTGCGGCGCTGGTGTCTCCAATCCCGACTATAACAGTGACAGCAGTGAGGACAGCCTCTGTAAGGTCGAACACGCCTCCCTGGATCGCTTCCCTTTCCCTCTTCAACCCAGACGTCAAAAGATGATGCCAGAGAAGGTAACTGATGAAAGTGCCACTTTGGAGCTGTCCAAACTGACTGTTACTGCGGACATCAACTTTGTGGAGTCTAGGAATGTTACTGTTGTATGACAAATGGAATGGATTGTCCTGGAATCTCCTAACAGGACAGCAACACGGGTCAACCTCCAGGAAATGGAAGAGAAACACCACACCGCTTGAGGTAGTACCTTgcccagtttttatttttatgtatattGACTGAGATCATGCATTTATTCATTCATCAGTTGAATGAAGATGGTAGCTAATGGATATTTTTGTTCTACCCATAATTTCTTGCCTACATTTTATATCGAGCATGCTCAGTACATTTTGTTTTGCAATGTTTCTCAAAAAGccagtacattttttaaaagccTATTGCACAATACTTTCAGAGGTATTTATCAGTTTCTCATGCCTTCTCTCAAAACTTACAATAAACCTTTGGAGTTTGAAATGAATTTGATGACCTTAATGGGTACATTTCATGTAATATTGAATACAAAGTAAACACTAATAGAATCTGTTCCTTGGAGTAGATGGTATTTGCTCCATGAGCTTCTCAAACCACACAAACAGTATGCCTCTGGCCTAGCCTTCCCTCTGAAGTGCATTGATACCAAAGATAGGTCTCATATTGTAAACTAcaacataaaaaatattttaagtaGTTAACTCTGGCTTGGTGCTTGACTTGGGCCGGAGCGCTGTACCGGCACTACTAATTTTTGGGGAATTGCATACCGGATCTGCATTGAATAGAAATAGaataccacagtatgagtcataatacccatatccacggggaagtaggggtgctgccTCCCCCCACACTTTGATAACATTTGCAGAACCCCTATCCTtcaaactaaactcagcaaaaaaagaaacatccc

Function

NR:

description
organic solute transporter subunit alpha-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615779.2 False 2197 mRNA 0.47 8 42690293 42695335
XM_021615778.2 True 2199 mRNA 0.47 8 42690294 42695335

Neighbor

gene id symbol gene type direction distance location
LOC110533013 LOC106566826 coding upstream 810 42652132 ~ 42689483 (+)
LOC110532136 LOC106572228 coding upstream 93596 42571812 ~ 42596697 (+)
LOC110532135 LOC106566930 coding upstream 124959 42563408 ~ 42565334 (+)
tpx2 LOC106572230 coding upstream 133800 42546845 ~ 42556493 (+)
trappc6b trappc6b coding upstream 143762 42541021 ~ 42546531 (+)
foxp3-1 foxp3-1 coding downstream 3616 42698951 ~ 42747753 (+)
LOC110532144 LOC106572221 coding downstream 57941 42753276 ~ 42867302 (+)
LOC110532147 LOC106572219 coding downstream 207761 42903096 ~ 42911687 (+)
LOC110532148 LOC106572218 coding downstream 217048 42912383 ~ 42930990 (+)
LOC110532149 LOC106572217 coding downstream 239929 42935264 ~ 42963028 (+)
G805788 NA non-coding upstream 10944 42679144 ~ 42679349 (+)
G805786 NA non-coding upstream 12457 42677536 ~ 42677836 (+)
G805781 NA non-coding upstream 24310 42665769 ~ 42665983 (+)
G805779 NA non-coding upstream 25842 42661815 ~ 42664451 (+)
G805749 NA non-coding upstream 75093 42614860 ~ 42615200 (+)
G806141 NA non-coding downstream 189350 42884685 ~ 42885267 (+)
G806227 NA non-coding downstream 224197 42919532 ~ 42920390 (+)
G806243 NA non-coding downstream 274440 42969775 ~ 42970005 (+)
G806244 NA non-coding downstream 275178 42970513 ~ 42970739 (+)
G806245 NA non-coding downstream 275488 42970823 ~ 42971089 (+)
G805600 NA other upstream 341507 42346176 ~ 42348786 (+)
G805451 NA other upstream 357855 42332093 ~ 42332438 (+)
LOC110532114 LOC106572334 other upstream 665890 42021496 ~ 42027071 (+)
LOC110532096 LOC106572259 other upstream 1254870 41423598 ~ 41452922 (+)
G803728 NA other upstream 1668791 41020936 ~ 41021502 (+)
G807677 NA other downstream 1500380 44195715 ~ 44196041 (+)
G807841 NA other downstream 1747327 44442662 ~ 44453077 (+)
G809685 NA other downstream 3439396 46134731 ~ 46135732 (+)
G812143 NA other downstream 5286666 47982001 ~ 47982301 (+)
G812688 LOC106572106 other downstream 5850119 48545454 ~ 48570593 (+)

Expression


Co-expression Network