Gene
RNA
| Item | Value |
|---|---|
| gene id | ybx1 |
| gene name | LOC106572208 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048573.1 |
| NCBI id | CM023227.2 |
| chromosome length | 79455637 |
| location | 43329368 ~ 43335690 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| nuclease-sensitive element-binding protein 1-like isoform X2 |
| id | description |
|---|---|
| K09276 | YBX1, NSEP1; Y-box-binding protein 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021615817.1 | False | 1517 | mRNA | 0.55 | 8 | 43329368 | 43335690 |
| XM_021615818.1 | True | 1454 | mRNA | 0.54 | 8 | 43329368 | 43335690 |
43,326,000
43,327,000
43,328,000
43,329,000
43,330,000
43,331,000
43,332,000
43,333,000
43,334,000
43,335,000
43,336,000
43,337,000
43,338,000
43,339,000
43,340,000
43,341,000
43,342,000
NC_048573.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| ppih | ppih | coding | upstream | 5559 | 43288149 ~ 43323809 (+) |
| taf10 | LOC106572212 | coding | upstream | 41389 | 43285841 ~ 43287979 (+) |
| LOC110531181 | LOC106572211 | coding | upstream | 54362 | 43265517 ~ 43275006 (+) |
| LOC110532149 | LOC106572217 | coding | upstream | 366340 | 42935264 ~ 42963028 (+) |
| LOC110532148 | LOC106572218 | coding | upstream | 398378 | 42912383 ~ 42930990 (+) |
| acot7 | acot7 | coding | downstream | 173288 | 43508978 ~ 43579823 (+) |
| LOC110531183 | gpr153 | coding | downstream | 255815 | 43591505 ~ 43647450 (+) |
| LOC118966053 | NA | coding | downstream | 331122 | 43666812 ~ 43690641 (+) |
| wrap73 | wrap73 | coding | downstream | 407778 | 43743468 ~ 43764862 (+) |
| LOC110533015 | NA | coding | downstream | 698626 | 44034316 ~ 44034840 (+) |
| G806458 | LOC100846954 | non-coding | upstream | 6690 | 43320051 ~ 43322678 (+) |
| G806407 | NA | non-coding | upstream | 88745 | 43240263 ~ 43240623 (+) |
| G806406 | NA | non-coding | upstream | 89544 | 43239616 ~ 43239824 (+) |
| G806405 | NA | non-coding | upstream | 90449 | 43238702 ~ 43238919 (+) |
| G806404 | NA | non-coding | upstream | 90682 | 43237853 ~ 43238686 (+) |
| G806470 | NA | non-coding | downstream | 27974 | 43363664 ~ 43364473 (+) |
| G806510 | NA | non-coding | downstream | 99970 | 43435660 ~ 43435872 (+) |
| G806513 | NA | non-coding | downstream | 105468 | 43441158 ~ 43441383 (+) |
| G806884 | NA | non-coding | downstream | 153187 | 43488877 ~ 43489132 (+) |
| G806890 | NA | non-coding | downstream | 157627 | 43493317 ~ 43493848 (+) |
| G805600 | NA | other | upstream | 980582 | 42346176 ~ 42348786 (+) |
| G805451 | NA | other | upstream | 996930 | 42332093 ~ 42332438 (+) |
| LOC110532114 | LOC106572334 | other | upstream | 1304965 | 42021496 ~ 42027071 (+) |
| LOC110532096 | LOC106572259 | other | upstream | 1893945 | 41423598 ~ 41452922 (+) |
| G803728 | NA | other | upstream | 2307866 | 41020936 ~ 41021502 (+) |
| G807677 | NA | other | downstream | 860025 | 44195715 ~ 44196041 (+) |
| G807841 | NA | other | downstream | 1106972 | 44442662 ~ 44453077 (+) |
| G809685 | NA | other | downstream | 2799041 | 46134731 ~ 46135732 (+) |
| G812143 | NA | other | downstream | 4646311 | 47982001 ~ 47982301 (+) |
| G812688 | LOC106572106 | other | downstream | 5209764 | 48545454 ~ 48570593 (+) |
