Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118966053 |
| gene name | NA |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048573.1 |
| NCBI id | CM023227.2 |
| chromosome length | 79455637 |
| location | 43666812 ~ 43690641 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005053255.1 | False | 427 | mRNA | 0.41 | 2 | 43666812 | 43690641 |
| TU918217 | True | 389 | lncRNA | 0.42 | 2 | 43666845 | 43690636 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110531183 | gpr153 | coding | upstream | 19362 | 43591505 ~ 43647450 (+) |
| acot7 | acot7 | coding | upstream | 86989 | 43508978 ~ 43579823 (+) |
| ybx1 | LOC106572208 | coding | upstream | 331122 | 43329368 ~ 43335690 (+) |
| ppih | ppih | coding | upstream | 343003 | 43288149 ~ 43323809 (+) |
| taf10 | LOC106572212 | coding | upstream | 378833 | 43285841 ~ 43287979 (+) |
| wrap73 | wrap73 | coding | downstream | 52827 | 43743468 ~ 43764862 (+) |
| LOC110533015 | NA | coding | downstream | 343675 | 44034316 ~ 44034840 (+) |
| LOC110532176 | LOC106572191 | coding | downstream | 734373 | 44425014 ~ 44429101 (+) |
| agrn | LOC106572186 | coding | downstream | 820412 | 44511053 ~ 44790843 (+) |
| LOC110532179 | LOC106572187 | coding | downstream | 1109369 | 44800010 ~ 44857914 (+) |
| G806959 | NA | non-coding | upstream | 14387 | 43650991 ~ 43652425 (+) |
| G806958 | NA | non-coding | upstream | 75533 | 43591035 ~ 43591279 (+) |
| G806953 | NA | non-coding | upstream | 80281 | 43586261 ~ 43586531 (+) |
| G806917 | NA | non-coding | upstream | 134853 | 43530089 ~ 43531959 (+) |
| G806890 | NA | non-coding | upstream | 172964 | 43493317 ~ 43493848 (+) |
| G807060 | NA | non-coding | downstream | 51185 | 43741826 ~ 43742063 (+) |
| G807061 | NA | non-coding | downstream | 51949 | 43742590 ~ 43742840 (+) |
| G807063 | NA | non-coding | downstream | 74803 | 43765444 ~ 43768155 (+) |
| G807137 | NA | non-coding | downstream | 167809 | 43858450 ~ 43858722 (+) |
| G807176 | NA | non-coding | downstream | 236310 | 43926951 ~ 43931306 (+) |
| G805600 | NA | other | upstream | 1318026 | 42346176 ~ 42348786 (+) |
| G805451 | NA | other | upstream | 1334374 | 42332093 ~ 42332438 (+) |
| LOC110532114 | LOC106572334 | other | upstream | 1642409 | 42021496 ~ 42027071 (+) |
| LOC110532096 | LOC106572259 | other | upstream | 2231389 | 41423598 ~ 41452922 (+) |
| G803728 | NA | other | upstream | 2645310 | 41020936 ~ 41021502 (+) |
| G807677 | NA | other | downstream | 505074 | 44195715 ~ 44196041 (+) |
| G807841 | NA | other | downstream | 752021 | 44442662 ~ 44453077 (+) |
| G809685 | NA | other | downstream | 2444090 | 46134731 ~ 46135732 (+) |
| G812143 | NA | other | downstream | 4291360 | 47982001 ~ 47982301 (+) |
| G812688 | LOC106572106 | other | downstream | 4854813 | 48545454 ~ 48570593 (+) |
