LOC110532177 (LOC106572192)


Basic Information

Item Value
gene id LOC110532177
gene name LOC106572192
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 44442368 ~ 44444009 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615847.2
CATTGCCATGGGTTGACAACATACCTTGTCTTGGACACAGACTGAATAGATACTTCACTGAGAACTCACCACAGAAGACATGAAGTATTGTGTTCTCCTGATAATGATCCATCTACTGTTGGTGGAACTGCCTCAATTTCCAGAAGCACTACAAGGAAACGTGTATGCAGCAGCTCCAGTTGTTGCCGCAACCGATTTAAGACTGAGGATCAGGTCTAGTTACATTGGCAGAAGCTGTAAGGAAATAAGGGACCGATATAATCAACATGAAGATGGGCTGTACTACCTGTCCACAGCCAGCGGGACAGTCTACCAGACCTTCTGCGACATGACCACCGCTGGCGGCGGCTGGACACTTGTGGCGAGCGTGCACGAGAACAACGTGTATGGGAAGTGCACAATGGGTGACCGTTGGTCCAGCCAGCAAGGCAGCAACCCCAACTGGCCAGACGGAGATGGGAACTGGGCCAACAGGGCCACTTTTGGAACCGCAGAGGGTGCCACCTCAGACGACTTCAAGAATCCTGGGTATTATGACATTGTGGCAGAAGACATTTCGGTGTGGCACGTTCCCAACAACTCCCCGATGGAACACTGGAACCTAGGCGCCATCCTCCGTTACCACACAGAGAGAAGCTTTCTCTCCATTCAAGGGGGAAATCTGCATCAACTCTTTAAGCTCTACCCAGTGAGATATAATGCTGAGGCAAGTGGGAACACAGGACCTGTCATTCCAATTGTGTACGACTTTGGGGACAAAGAAACCACAAGAAAACTTTACGGACCCAACACAAGAAACCAGTTTGAACCTGGCTTCATCACTTTCAGGCCAATAAATAATGAACTGGCGGCCATGGCTATCTGCTCTGGGGTCAAACCAACAACTGGCGGCGACACTGAACATTACTGTATTGGTGGTGGTGGACATTTCCCTGAGGGAGCCCCTCGTCAGTGTGGCGACTTCCCAGCCTTTGACTGGAATGGCTATGGGACCAACACAGAATGGAGTGCATCAAAGCAGTTAACTGAAGCAGCTGTGTTACTCTTCTACCGTTAAAATTCTTCCTGTTGATTATCAATGTGTAATAGTACCgcaatgttttaaacaaatgTATCCATTGTTATCAAATGTATGTGAAGATTCATTTTGTTTATACTGTTTGTATATAATGTACATAACAGAACTAggattttcatttgtttaatctATAAATGCCTTCTCCCTGCAGTAAAATGGAATACTTGTATCATAGTTTCCTTGTAGAAGTAGTAGGAGCAATGAGTATTATCACTGTGTGAATATGAATGACTGAAATAAAAACTACTCTAAAGGAGAAATTGACCGCAGTTGGTCTTTCGTTATGTTTCAATATGCTTTGTCTTATAGGCATGAAAGACATGCCACCGTTTTGAGTTTGTTACATTTACTGTGCATTGTTCAGTGAACTGCAGTACATTGTCCAATCACAACACTTCCCTGTGTAACATCAATATAAACATAACATGTCAagaaacaaaaaaacaagaaaaggtGGCCTGTATTTTTCTAATGCATTTTTTATTTAAGTGGCTACAAACAAATACAGGCACTGTACCTTCACAAAAGGATGGTTTGTTTCTCTCAGTGGCCTGAAAATAATTC

Function

NR:

description
intelectin

GO: NA

KEGG:

id description
K17527 ITLN; intelectin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615847.2 True 1642 mRNA 0.44 1 44442368 44444009
Loading

Neighbor

gene id symbol gene type direction distance location
tafa5l LOC106572193 coding downstream 149971 44247091 ~ 44292397 (-)
mapk13 mk13 coding downstream 235903 44196588 ~ 44249763 (-)
brpf3b brpf3 coding downstream 249027 44178463 ~ 44193341 (-)
plod1a plod1 coding downstream 275380 44151220 ~ 44166988 (-)
mfn2 mfn2 coding downstream 291882 44121830 ~ 44150486 (-)
LOC110532180 LOC106572190 coding upstream 419022 44863031 ~ 44870291 (-)
LOC100136637 LOC100329213 coding upstream 778670 45222679 ~ 45224379 (-)
rtel1 rtel1 coding upstream 781196 45225205 ~ 45281464 (-)
pdyn pdyn coding upstream 872555 45316564 ~ 45318766 (-)
LOC110532194 LOC106572173 coding upstream 1053882 45497891 ~ 45513979 (-)
mtor mtor non-coding downstream 59586 44333485 ~ 44456959 (-)
G807893 NA non-coding downstream 135092 44244744 ~ 44307276 (-)
G807675 NA non-coding downstream 247820 44194341 ~ 44194548 (-)
G807992 NA non-coding upstream 31808 44475817 ~ 44476053 (-)
G808013 NA non-coding upstream 50451 44494460 ~ 44494779 (-)
G808016 NA non-coding upstream 53043 44497052 ~ 44497280 (-)
G808031 NA non-coding upstream 62322 44506331 ~ 44506564 (-)
G808033 NA non-coding upstream 63303 44507312 ~ 44507553 (-)
G807941 NA other downstream 80202 44361416 ~ 44362166 (-)
prdm16 prdm16 other downstream 426912 43781726 ~ 44015554 (-)
G806724 LOC106572208 other downstream 1109665 43331930 ~ 43339589 (-)
LOC110532119 LOC106572245 other downstream 2303042 42125255 ~ 42141613 (-)
G808375 NA other upstream 190550 44634559 ~ 44636846 (-)
G809071 LOC106572179 other upstream 851847 45295856 ~ 45298740 (-)
zmynd12 zmynd12 other upstream 1743255 46187156 ~ 46200250 (-)
G810563 NA other upstream 1809505 46253514 ~ 46256922 (-)

Expression

LOC110532177(LOC106572192) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.25.
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LOC110532177(LOC106572192) Expression in each Bioproject

Bar chart with 18 bars.
LOC110532177(LOC106572192) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
End of interactive chart.

Co-expression Network