LOC110532184 (LOC106572184)


Basic Information

Item Value
gene id LOC110532184
gene name LOC106572184
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 45076911 ~ 45085575 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615868.2
TCCTATGCAGACGGAGGTCCAGTGCCATAAGAGGTGGGAGAACGCCGAAGAAAAACCCCAGCTATAGGAAACTACAGAATTTTCTATATAATGCACTTGAAAGACCGCGGGGATGGGCGTTTATTTACCACGCTTATGTCTATGGCTTCCTCCAACAGTCTCCTGTCTGAAGAGCAGTTCCAGTGCTCTATCTGTCTAGATGTGTTCACTGACCCAGTCTCCATCCCGTGTGGACACAACTTCTGCATGGCCTGTATCGGAGTGTACTGGAACGCTAAGGGGCTATGCAAGTGTCCAATGTGTAAAAAGGCTTTTGAACAGAGACCAGATCTCAGTGTCAATACTTTTATTTCTGAAATGGCCGCCCACGTCCGGAAGCTAGCTCCAGCTGACAGCACACTCAAACAGCACCCCGCCAAGCCTGGAGAAGTGGCCTGTGATGTCTGCACTGGGAGGAAGTTCATGGCCTTGAAGTCGTGCCTGGTTTGTCTGGCTtcttactgtgagactcacctAGAGCCTCATCAGAGAGTTGCTTCCTTCAAGAAACACAAGCTAATTGACCCTGTGGAGAACCTGGATGACAGGGTGTGTGAGAAGCACCAACGACCCCTGGAGTTGTTCTGTAGGAGCGACCAGACCTGTGTGTGTCAGTTCTGCACTGAGACAGACCACAAGTTCCACAAGACTGTCCCcatagaggaagagagtggagtgAGGAAGAGTCTACTGTGGGAAACCAAGGGAAAAGTGCAGAGGATGATCAAGGACAGACTGCAGAAGGTGAAGCAGATGGAACACTCAATAGCACTCAGGAAGaggggtgcagagagagagatagaagatagCGTGCATGTCTTCACTACTCTGGTGCGCGCTATTGAGAATAGCCAGGCTGAGTTCATTGAGGTGATTGAGGTGAAACAGAAAGCAGCAGAGAGGCGTGCTGAAGGGCTCATCAAAGAGCTGGATCAGGAAATCACTGAACTACAAAGGAGACTCACTGATCTGCAGAAGCTGTCAAACACAGAGGACCACCTCCACGTCCTCCAGAGCTCTCCATCGCTTTGCACCCTTCCACGCACCAAGGACTGGTCTGAGATCAGGGTTCACAGCGGTTTGTGGGTCGGGACCCTTAGGAGAGCTGTGTCTCAACTGGAGGAGACGCTTTATGAAGAGATTGAGAAGTTGTGTGAGACCGAGCTGGAGAGAATGCAGCAGTCAGCTGTGGATGTGACTCTGGACTCTGATACGGCAAATCCCAAACTCATTTTGTCTGAGGATGGGAAACAGGTGAAGCTAGGAGACAGACAAAAGCTCTTCCTTGACAACCCAAAGAGGTTTGATCCTGTACCCTGTGTACTAGGAAATGAAGGCTTTGCCTCTGGGAGATTTTACTTTGAGGTGCAGGTGGAGGGGAAGACTAGGTGGGCTTTGGGAGTGGCCAGAGAGTCCATCAACAGGAAGGGGAATGTACAGCCCAGTCCTGTGAATGGATACTGGACTGTTGGGCTGATGAATGGGGATGAGTACATGGCTCACGCTGGGCccagtgtccctctctctctatcagaggAGCCTCAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGGGAGGTCTCCTTTTATGATGTGGAGGCCGGGTCTCATATCTACTCTTTCACCGTCTGCACCTTCACTGAGAGACTCTACCCATACCTCTTTACAGGCATAAATAAGGATGATAAAAACTCTGCCCCATTGATCATTTGTCCGATTATGTCCGTCAATCAGTATGAGATTTTATCTCTCGATGATACACCTTAGATTTCAGCAATTGATTCAGTCAAGTGATTGTTGATACTTCTATACAGCTTTTCGAAAATGGTCACAGCATTGGAATGACACAGTGAGAAAGTTAGGTGTCTAATCAGGCGTGCAActgacaatgtttttttttagcttttcatttagatTGAATGGACAAAGTCCCCCTCatacaaaaacatatattttaccTCCACAATCATGTAGGAATTCATTATTATTTTGCCTATTTTTCTCTGTGGCATATAtaagtaactgccaaaataaaggaaacgccaACATAGTGTCTAAATAGGGCGTTGGGctaccacgagccagaacagcttcaatgcacctcggCGTTGATTCTACAAGTGCCTGGAACTCAACTGGAGGGATGTAACACCATTCCATCATTTTgggttttgttgatggtggtggaaaatgctgtctcaggcgtcgctccagaatctcccgtaagtgttcaattgggttgagatctggtgactgagacagccatctcatatgatttacattgttttcatgctcatcaaaacattcagtgaccacttgtgccctgtggatgggggcataggCATggcagccaaaataatggcctgcccagcattttttaTCATTTCCCTAAGCATGATGGGGATGTTAATTTGCTTAACGTGAGAAATGACGTTGCCACGAGCATCGCCGCAGATATTCAGATGAGAGAGATGCAAGACtttgctctcacacagtcacagacagtATCTGTTCATGGGTTCACTTCACACAGTTCACAATGTAACAGCCACGGGACTAAAACAGCCGAGAAGTTGAGCCTCAcacttcaacgctcttagttgttgcaGAAATGTACTCACTATGCCGTTTACTTTGTGCATCTacatcatatcgctgagtctacctttaattagctcaggaaccacacctgtgtagaagcacctgctttcaatatgtTTCATATCCCTTATTTACTCAAGTATTTTGGTAGTTACCTTGATATTCATTTCCTTGAAATGCGTAACGATGATATGTGTATAATCAATGGGCTACTGGAGAGGGAGTACTGCTCTGTATATTTGGAGGGTACGTTTTGGGGTGAGGTGAAAGGTTTTGTTGGGCGTTTTtcttaaaatataaaaaataaatgccACAGTGCTTTATGACAGTTTACACAGGTGCATGAGTTGGACTCTTTTAAATATTCAAAAGTTTACAAAGTGGTTGGAGATGCTCTGCAGCCTGCAGAGTATTGATGTTTGAAATGATGTTAACCGTAATTACACCGTCCTTTAATGTTGGAATTTAGCAAAAAAGGTTTGAACGACAAATCAATGTCCTGTTATCAAATAAACATTCAGCACGTATTCTTATTTGGTGTTTATTCCAAGGGAGAAggactgccccctctcattgaagccacaAAGTTCAAGGCCGACCACAGTACTGCAGGCAGTTTGCAGAAAACAGTATCCCCCATTGTAGTGATTGGGAAGAAGGCAATATATTCATGGTCAATCTTTGTGTACAAAAATAAAaagataaatacatt
>XM_021615869.2
CTGAAGTGAAACTTAAGAGTATTTCCACGTAACTGTACCAAATCCCCAGTCACTGTTATCCTTTTTCTCTGATCCGAAGAGGAGAACGAACAGTCAACAACATACTGCACACTGAGCTATGGCTTCCTCCAACAGTCTCCTGTCTGAAGAGCAGTTCCAGTGCTCTATCTGTCTAGATGTGTTCACTGACCCAGTCTCCATCCCGTGTGGACACAACTTCTGCATGGCCTGTATCGGAGTGTACTGGAACGCTAAGGGGCTATGCAAGTGTCCAATGTGTAAAAAGGCTTTTGAACAGAGACCAGATCTCAGTGTCAATACTTTTATTTCTGAAATGGCCGCCCACGTCCGGAAGCTAGCTCCAGCTGACAGCACACTCAAACAGCACCCCGCCAAGCCTGGAGAAGTGGCCTGTGATGTCTGCACTGGGAGGAAGTTCATGGCCTTGAAGTCGTGCCTGGTTTGTCTGGCTtcttactgtgagactcacctAGAGCCTCATCAGAGAGTTGCTTCCTTCAAGAAACACAAGCTAATTGACCCTGTGGAGAACCTGGATGACAGGGTGTGTGAGAAGCACCAACGACCCCTGGAGTTGTTCTGTAGGAGCGACCAGACCTGTGTGTGTCAGTTCTGCACTGAGACAGACCACAAGTTCCACAAGACTGTCCCcatagaggaagagagtggagtgAGGAAGAGTCTACTGTGGGAAACCAAGGGAAAAGTGCAGAGGATGATCAAGGACAGACTGCAGAAGGTGAAGCAGATGGAACACTCAATAGCACTCAGGAAGaggggtgcagagagagagatagaagatagCGTGCATGTCTTCACTACTCTGGTGCGCGCTATTGAGAATAGCCAGGCTGAGTTCATTGAGGTGATTGAGGTGAAACAGAAAGCAGCAGAGAGGCGTGCTGAAGGGCTCATCAAAGAGCTGGATCAGGAAATCACTGAACTACAAAGGAGACTCACTGATCTGCAGAAGCTGTCAAACACAGAGGACCACCTCCACGTCCTCCAGAGCTCTCCATCGCTTTGCACCCTTCCACGCACCAAGGACTGGTCTGAGATCAGGGTTCACAGCGGTTTGTGGGTCGGGACCCTTAGGAGAGCTGTGTCTCAACTGGAGGAGACGCTTTATGAAGAGATTGAGAAGTTGTGTGAGACCGAGCTGGAGAGAATGCAGCAGTCAGCTGTGGATGTGACTCTGGACTCTGATACGGCAAATCCCAAACTCATTTTGTCTGAGGATGGGAAACAGGTGAAGCTAGGAGACAGACAAAAGCTCTTCCTTGACAACCCAAAGAGGTTTGATCCTGTACCCTGTGTACTAGGAAATGAAGGCTTTGCCTCTGGGAGATTTTACTTTGAGGTGCAGGTGGAGGGGAAGACTAGGTGGGCTTTGGGAGTGGCCAGAGAGTCCATCAACAGGAAGGGGAATGTACAGCCCAGTCCTGTGAATGGATACTGGACTGTTGGGCTGATGAATGGGGATGAGTACATGGCTCACGCTGGGCccagtgtccctctctctctatcagaggAGCCTCAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGGGAGGTCTCCTTTTATGATGTGGAGGCCGGGTCTCATATCTACTCTTTCACCGTCTGCACCTTCACTGAGAGACTCTACCCATACCTCTTTACAGGCATAAATAAGGATGATAAAAACTCTGCCCCATTGATCATTTGTCCGATTATGTCCGTCAATCAGTATGAGATTTTATCTCTCGATGATACACCTTAGATTTCAGCAATTGATTCAGTCAAGTGATTGTTGATACTTCTATACAGCTTTTCGAAAATGGTCACAGCATTGGAATGACACAGTGAGAAAGTTAGGTGTCTAATCAGGCGTGCAActgacaatgtttttttttagcttttcatttagatTGAATGGACAAAGTCCCCCTCatacaaaaacatatattttaccTCCACAATCATGTAGGAATTCATTATTATTTTGCCTATTTTTCTCTGTGGCATATAtaagtaactgccaaaataaaggaaacgccaACATAGTGTCTAAATAGGGCGTTGGGctaccacgagccagaacagcttcaatgcacctcggCGTTGATTCTACAAGTGCCTGGAACTCAACTGGAGGGATGTAACACCATTCCATCATTTTgggttttgttgatggtggtggaaaatgctgtctcaggcgtcgctccagaatctcccgtaagtgttcaattgggttgagatctggtgactgagacagccatctcatatgatttacattgttttcatgctcatcaaaacattcagtgaccacttgtgccctgtggatgggggcataggCATggcagccaaaataatggcctgcccagcattttttaTCATTTCCCTAAGCATGATGGGGATGTTAATTTGCTTAACGTGAGAAATGACGTTGCCACGAGCATCGCCGCAGATATTCAGATGAGAGAGATGCAAGACtttgctctcacacagtcacagacagtATCTGTTCATGGGTTCACTTCACACAGTTCACAATGTAACAGCCACGGGACTAAAACAGCCGAGAAGTTGAGCCTCAcacttcaacgctcttagttgttgcaGAAATGTACTCACTATGCCGTTTACTTTGTGCATCTacatcatatcgctgagtctacctttaattagctcaggaaccacacctgtgtagaagcacctgctttcaatatgtTTCATATCCCTTATTTACTCAAGTATTTTGGTAGTTACCTTGATATTCATTTCCTTGAAATGCGTAACGATGATATGTGTATAATCAATGGGCTACTGGAGAGGGAGTACTGCTCTGTATATTTGGAGGGTACGTTTTGGGGTGAGGTGAAAGGTTTTGTTGGGCGTTTTtcttaaaatataaaaaataaatgccACAGTGCTTTATGACAGTTTACACAGGTGCATGAGTTGGACTCTTTTAAATATTCAAAAGTTTACAAAGTGGTTGGAGATGCTCTGCAGCCTGCAGAGTATTGATGTTTGAAATGATGTTAACCGTAATTACACCGTCCTTTAATGTTGGAATTTAGCAAAAAAGGTTTGAACGACAAATCAATGTCCTGTTATCAAATAAACATTCAGCACGTATTCTTATTTGGTGTTTATTCCAAGGGAGAAggactgccccctctcattgaagccacaAAGTTCAAGGCCGACCACAGTACTGCAGGCAGTTTGCAGAAAACAGTATCCCCCATTGTAGTGATTGGGAAGAAGGCAATATATTCATGGTCAATCTTTGTGTACAAAAATAAAaagataaatacatt
>XM_036988125.1
CTCTgaaggttggaggacgtcctccgaaAGTCGTCATAAtttctgtCTATGGCTTCCTCCAACAGTCTCCTGTCTGAAGAGCAGTTCCAGTGCTCTATCTGTCTAGATGTGTTCACTGACCCAGTCTCCATCCCGTGTGGACACAACTTCTGCATGGCCTGTATCGGAGTGTACTGGAACGCTAAGGGGCTATGCAAGTGTCCAATGTGTAAAAAGGCTTTTGAACAGAGACCAGATCTCAGTGTCAATACTTTTATTTCTGAAATGGCCGCCCACGTCCGGAAGCTAGCTCCAGCTGACAGCACACTCAAACAGCACCCCGCCAAGCCTGGAGAAGTGGCCTGTGATGTCTGCACTGGGAGGAAGTTCATGGCCTTGAAGTCGTGCCTGGTTTGTCTGGCTtcttactgtgagactcacctAGAGCCTCATCAGAGAGTTGCTTCCTTCAAGAAACACAAGCTAATTGACCCTGTGGAGAACCTGGATGACAGGGTGTGTGAGAAGCACCAACGACCCCTGGAGTTGTTCTGTAGGAGCGACCAGACCTGTGTGTGTCAGTTCTGCACTGAGACAGACCACAAGTTCCACAAGACTGTCCCcatagaggaagagagtggagtgAGGAAGAGTCTACTGTGGGAAACCAAGGGAAAAGTGCAGAGGATGATCAAGGACAGACTGCAGAAGGTGAAGCAGATGGAACACTCAATAGCACTCAGGAAGaggggtgcagagagagagatagaagatagCGTGCATGTCTTCACTACTCTGGTGCGCGCTATTGAGAATAGCCAGGCTGAGTTCATTGAGGTGATTGAGGTGAAACAGAAAGCAGCAGAGAGGCGTGCTGAAGGGCTCATCAAAGAGCTGGATCAGGAAATCACTGAACTACAAAGGAGACTCACTGATCTGCAGAAGCTGTCAAACACAGAGGACCACCTCCACGTCCTCCAGAGCTCTCCATCGCTTTGCACCCTTCCACGCACCAAGGACTGGTCTGAGATCAGGGTTCACAGCGGTTTGTGGGTCGGGACCCTTAGGAGAGCTGTGTCTCAACTGGAGGAGACGCTTTATGAAGAGATTGAGAAGTTGTGTGAGACCGAGCTGGAGAGAATGCAGCAGTCAGCTGTGGATGTGACTCTGGACTCTGATACGGCAAATCCCAAACTCATTTTGTCTGAGGATGGGAAACAGGTGAAGCTAGGAGACAGACAAAAGCTCTTCCTTGACAACCCAAAGAGGTTTGATCCTGTACCCTGTGTACTAGGAAATGAAGGCTTTGCCTCTGGGAGATTTTACTTTGAGGTGCAGGTGGAGGGGAAGACTAGGTGGGCTTTGGGAGTGGCCAGAGAGTCCATCAACAGGAAGGGGAATGTACAGCCCAGTCCTGTGAATGGATACTGGACTGTTGGGCTGATGAATGGGGATGAGTACATGGCTCACGCTGGGCccagtgtccctctctctctatcagaggAGCCTCAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGGGAGGTCTCCTTTTATGATGTGGAGGCCGGGTCTCATATCTACTCTTTCACCGTCTGCACCTTCACTGAGAGACTCTACCCATACCTCTTTACAGGCATAAATAAGGATGATAAAAACTCTGCCCCATTGATCATTTGTCCGATTATGTCCGTCAATCAGTATGAGATTTTATCTCTCGATGATACACCTTAGATTTCAGCAATTGATTCAGTCAAGTGATTGTTGATACTTCTATACAGCTTTTCGAAAATGGTCACAGCATTGGAATGACACAGTGAGAAAGTTAGGTGTCTAATCAGGCGTGCAActgacaatgtttttttttagcttttcatttagatTGAATGGACAAAGTCCCCCTCatacaaaaacatatattttaccTCCACAATCATGTAGGAATTCATTATTATTTTGCCTATTTTTCTCTGTGGCATATAtaagtaactgccaaaataaaggaaacgccaACATAGTGTCTAAATAGGGCGTTGGGctaccacgagccagaacagcttcaatgcacctcggCGTTGATTCTACAAGTGCCTGGAACTCAACTGGAGGGATGTAACACCATTCCATCATTTTgggttttgttgatggtggtggaaaatgctgtctcaggcgtcgctccagaatctcccgtaagtgttcaattgggttgagatctggtgactgagacagccatctcatatgatttacattgttttcatgctcatcaaaacattcagtgaccacttgtgccctgtggatgggggcataggCATggcagccaaaataatggcctgcccagcattttttaTCATTTCCCTAAGCATGATGGGGATGTTAATTTGCTTAACGTGAGAAATGACGTTGCCACGAGCATCGCCGCAGATATTCAGATGAGAGAGATGCAAGACtttgctctcacacagtcacagacagtATCTGTTCATGGGTTCACTTCACACAGTTCACAATGTAACAGCCACGGGACTAAAACAGCCGAGAAGTTGAGCCTCAcacttcaacgctcttagttgttgcaGAAATGTACTCACTATGCCGTTTACTTTGTGCATCTacatcatatcgctgagtctacctttaattagctcaggaaccacacctgtgtagaagcacctgctttcaatatgtTTCATATCCCTTATTTACTCAAGTATTTTGGTAGTTACCTTGATATTCATTTCCTTGAAATGCGTAACGATGATATGTGTATAATCAATGGGCTACTGGAGAGGGAGTACTGCTCTGTATATTTGGAGGGTACGTTTTGGGGTGAGGTGAAAGGTTTTGTTGGGCGTTTTtcttaaaatataaaaaataaatgccACAGTGCTTTATGACAGTTTACACAGGTGCATGAGTTGGACTCTTTTAAATATTCAAAAGTTTACAAAGTGGTTGGAGATGCTCTGCAGCCTGCAGAGTATTGATGTTTGAAATGATGTTAACCGTAATTACACCGTCCTTTAATGTTGGAATTTAGCAAAAAAGGTTTGAACGACAAATCAATGTCCTGTTATCAAATAAACATTCAGCACGTATTCTTATTTGGTGTTTATTCCAAGGGAGAAggactgccccctctcattgaagccacaAAGTTCAAGGCCGACCACAGTACTGCAGGCAGTTTGCAGAAAACAGTATCCCCCATTGTAGTGATTGGGAAGAAGGCAATATATTCATGGTCAATCTTTGTGTACAAAAATAAAaagataaatacatt

Function

NR:

description
E3 ubiquitin-protein ligase TRIM39-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615868.2 False 3355 mRNA 0.46 2 45076911 45085575
XM_021615869.2 False 3332 mRNA 0.45 2 45080611 45085575
XM_036988125.1 True 3262 mRNA 0.46 2 45081974 45085575

Neighbor

gene id symbol gene type direction distance location
prex1 LOC106572294 coding upstream 3852 44959576 ~ 45073059 (+)
LOC110532181 LOC106572185 coding upstream 117789 44912964 ~ 44959122 (+)
LOC110532179 LOC106572187 coding upstream 218997 44800010 ~ 44857914 (+)
agrn LOC106572186 coding upstream 286068 44511053 ~ 44790843 (+)
LOC110532176 LOC106572191 coding upstream 647810 44425014 ~ 44429101 (+)
chrna4b LOC106572182 coding downstream 94830 45176863 ~ 45191840 (+)
LOC110532188 LOC106572179 coding downstream 200405 45285980 ~ 45298752 (+)
LOC110532189 gmeb2 coding downstream 217791 45303366 ~ 45311274 (+)
LOC118966054 NA coding downstream 230199 45315766 ~ 45318483 (+)
LOC110532191 stk35 coding downstream 320547 45406122 ~ 45424517 (+)
G808262 NA non-coding upstream 2590 45074073 ~ 45074321 (+)
G808244 NA non-coding upstream 81526 44993815 ~ 44995385 (+)
G808212 NA non-coding upstream 127489 44948837 ~ 44949422 (+)
G808199 NA non-coding upstream 171582 44905105 ~ 44905329 (+)
G808188 NA non-coding upstream 198529 44878183 ~ 44878382 (+)
G808702 NA non-coding downstream 62905 45148480 ~ 45148705 (+)
G808703 NA non-coding downstream 63209 45148784 ~ 45148984 (+)
G808712 NA non-coding downstream 67996 45153571 ~ 45153891 (+)
G808722 NA non-coding downstream 74700 45160275 ~ 45160483 (+)
G808724 NA non-coding downstream 75919 45161494 ~ 45161862 (+)
G807841 NA other upstream 623834 44442662 ~ 44453077 (+)
G807677 NA other upstream 880870 44195715 ~ 44196041 (+)
G805600 NA other upstream 2728125 42346176 ~ 42348786 (+)
G805451 NA other upstream 2744473 42332093 ~ 42332438 (+)
LOC110532114 LOC106572334 other upstream 3052508 42021496 ~ 42027071 (+)
G809685 NA other downstream 1049156 46134731 ~ 46135732 (+)
G812143 NA other downstream 2896426 47982001 ~ 47982301 (+)
G812688 LOC106572106 other downstream 3459879 48545454 ~ 48570593 (+)
G813071 NA other downstream 3874174 48959749 ~ 48959991 (+)
G813074 etbr2 other downstream 3917744 48962187 ~ 49006710 (+)

Expression


Co-expression Network