chrna4b (LOC106572182)


Basic Information

Item Value
gene id chrna4b
gene name LOC106572182
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 45176863 ~ 45191840 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615870.2
ATGCTTTCCGTGCTGCCCACCGCTGAGGAGAGGCTTCTCAAGAACCTGTTTGCCCGCTACAACAAGCTGTCCCGGCCTGTGGCCAACACCTCCGATGTGGTGCTGGTCCACTTTGGCCTCTCCATCGCCCAGCTCATCGACGTGGATGAGAAGAACCAGATGATGACGACCAACGTCTGGGTGAAACAAGAGTGGAATGATTATAAACTCCGCTGGAACCCAGAGGAGTACGAGAATGTCACCTCCATCCGCATCCCGTCGGAAATCATCTGGAGGCCTGATATTGTGCTTTATAACAACGCTGATGGTGACTTCGCGGTGACCCACCTGACCAAGGCCCACCTGTTCTACGACGGACGCATCAAGTGGATGCCGCCGGCCATCTACAAGTCCTCCTGCAGCATTGACGTCACCTTCTTCCCCTTCGACCAGCAGAACTGCAAGATGAAGTTTGGTTCGTGGACTTACGACCGTGCCAAGATCGACTTGATCAGCATAGCCAGTGATGTGGACCAGATGGACTACTGGGAGAGCGGGGAGTGGGTGATCATCAACGCTGTGGGCAAGTACAACACCAAGAAGTACGAGTGCTGCACCGAGATCTACCCCGACATCACCTATTACTTCATCATCCGCAGGCTGCCGCTCTTCTACACTATCAACCTGATTATACCATGTCTGTTGATCTCCTGTCTGACTGTCTTGGTCTTCTATCTGCCCTCCCAGTGTGGCGAGAAGATCaccctgtgtatctctgtgttgctgtctctcACCGTCTTCCTCTTGCTCATTACCGAGATCATCCCGTCCACCTCGCTGGTCATCCCGCTCATCGGCGAGTACCTCCTCTTCACAATGATCTTTGTCACCCTATCTATCATCATCACCGTCTTTGTGCTCAACGTCCACCACCGCTCGCCGCGCACCCACGGCATGCCGCACTGGGTGCGCCGGGTCTTCCTGGACCTGGTGCCTCGTGTGCTTTTCATGAAGCGGCCACCGGCCACCGCCAAGCAGAACTGCCGGAAGCTGATTGAGATGATGCACCGGACCAGCTCCTCGACAGCAGCCAGTCAGTCGCAGTCTTTCTGGGCCGGGGTGGAAACGGGGCTAGGACAGCTTGGACAGCTGGGACACACAATGCCTGCCACCCCCTCTGACAGCTCCAACATCCTGGCCCTTtccccttcaccatctccctctcctacccAGGGCCTGCCCTTGGAGGAGCACCCCATCAAGGCCCCCCAGCTCTTCTGCCGCTCCCCTTCCAGCCAGTACTCCATCCTCCTTGAGGAGCCTGGCAAGCTCGGGAACACCGCCTCCCCTTTGTCCTGCTCAACCCACTCCTCCACTCCATGCTCTTCCCCCCCGTCTCTGCCGCTGGGTCCCCTGGGTCCAGTCCACTCTCTTCCCCGGGACGAGCCACAAATACTGTCCCCCAACGGGCGGAGCCACAGTGTAGAGCACgtgtttgaccaccagagggagtCTAACTGGGAGCCCCCCCAAAGGGTCGGGCACCGCTGCCGCTCCCACAGCTTCCAGTACTGCTGCCTGCACGAGGAAGGGGGTGGGGTTGCTGGTGGTGGCAAGGGCCGAGAGGCTGTAGGTGAAGGAAGGCTAAAGAGACAGGTCCTGCTAGACCAACTAGCTAGAGCCTCCTCCACAGAGCCCACTGTTGACCTAGTGATCCGGGAAACCATGGTCCACAGAATATCCCCGTCGATGAGAAGGGCCATAGAGGGTGTGCAGTACATCGCTGACCACCTCAGGGCAGAGGACGCCGACTTCTCAGTAAAGGAGGACTGGAAGTATGTGGCCATGGTCATTGACAGGATATTTCTGTGGATGTTTGTACTAGTGTGTATACTGGGAACACTGGGACTATTCCTTCCTCCTTGGCTGGCTGGAATGATCTAGAAACCTAGATTCCAGACACAGTGAAACTGTGTGGAAGTCCGATTCCGAGAAAGATTAAAGACAAGCGACACAGAGTTACAATGCAAAGTTACCTGTGAGTCTCTCTAGGCCAATATATTTCTAGGTTTTCTAATAGTGGTTGATTTATGGTATTTTAtgcattttttgttgatttttaGATTGAACGTGTAAGCCACTGTCTTTATTTGTGGATGCCATTGCGCACAGGTTATCATGAGGTTATTCACTAAGACATGGAGGGGGTGTGTCTTTCATTGACTCCACAGAGCATATGAATTCTTTATGAGGCCAAAAGGCTGACAGTGAAAACATCCTTCAAAATTCCATTTTGACATTGAGCTGCGTAGCCCAAGTCCTCACCAATGTATTACGaattactgcacacacacacacacacacacacacacatacctacctCAGTGTCAGAGGTGACATGGAAGGTTTCTGATTCATTAGCTTGAAATGCTGAGACTTAAATTAATCCGTTTCAATTAAATTGAgggtaatgtaaaaaaaaaaaaggaatttgTGGTTCATCAGGAAAAATCACACCCTATCACAGTTTGTTTATCTGATATTTAGTT
>TU920196
GCAGTATGTCCTTCACGAAGACTCCAAGACTGATTTGAGCTCTACTTTGTCTCCAACCAAAGACTGTAGGAGATCTTAACCATCTATCTACAACCTTTCTGTTTTGTTGGCGACTTGACGGGTTGGACAAGCCATCCCACATCCAGCTGGTAGAACATTTATGCAAGTTGATTAAAGGGGATTTGACACCCTTTAAAAGACCGAAGCGCACCGAATATAGGAGAGAGTTGACTACTGGAAACTGCCCATTGGCGTATGCACTATGAATCTTTCCAGGTGCTTACGCGTGTTGAGCGCACTTTTCTTCGTGCATCCTTCTCAAGTTTGTCCTCTTGGTGGACCCCGGGTCCATGCTTTCCGTGCTGCCCATGCCGCTGAGGAGAGGCTTCTCAAGAACCTGTTTGCCCG

Function

NR:

description
neuronal acetylcholine receptor subunit alpha-2-like

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615870.2 False 2528 mRNA 0.53 6 45180405 45191840
TU920196 True 408 lncRNA 0.49 2 45176863 45180462

Neighbor

gene id symbol gene type direction distance location
LOC110532183 LOC106572183 coding upstream 61219 45076564 ~ 45119186 (+)
LOC110532184 LOC106572184 coding upstream 94830 45076911 ~ 45085575 (+)
prex1 LOC106572294 coding upstream 107346 44959576 ~ 45073059 (+)
LOC110532181 LOC106572185 coding upstream 221283 44912964 ~ 44959122 (+)
LOC110532179 LOC106572187 coding upstream 322491 44800010 ~ 44857914 (+)
LOC110532188 LOC106572179 coding downstream 94140 45285980 ~ 45298752 (+)
LOC110532189 gmeb2 coding downstream 111526 45303366 ~ 45311274 (+)
LOC118966054 NA coding downstream 123934 45315766 ~ 45318483 (+)
LOC110532191 stk35 coding downstream 214282 45406122 ~ 45424517 (+)
LOC110532193 LOC106572175 coding downstream 270788 45462628 ~ 45484801 (+)
G808724 NA non-coding upstream 18543 45161494 ~ 45161862 (+)
G808722 NA non-coding upstream 19922 45160275 ~ 45160483 (+)
G808712 NA non-coding upstream 26514 45153571 ~ 45153891 (+)
G808703 NA non-coding upstream 31421 45148784 ~ 45148984 (+)
G808702 NA non-coding upstream 31700 45148480 ~ 45148705 (+)
G808777 NA non-coding downstream 29252 45221092 ~ 45221372 (+)
G808783 rtel1 non-coding downstream 35601 45227441 ~ 45237572 (+)
G808793 rtel1 non-coding downstream 49473 45241313 ~ 45253003 (+)
G808823 NA non-coding downstream 92146 45283986 ~ 45327942 (+)
G807841 NA other upstream 727328 44442662 ~ 44453077 (+)
G807677 NA other upstream 984364 44195715 ~ 44196041 (+)
G805600 NA other upstream 2831619 42346176 ~ 42348786 (+)
G805451 NA other upstream 2847967 42332093 ~ 42332438 (+)
LOC110532114 LOC106572334 other upstream 3156002 42021496 ~ 42027071 (+)
G809685 NA other downstream 942891 46134731 ~ 46135732 (+)
G812143 NA other downstream 2790161 47982001 ~ 47982301 (+)
G812688 LOC106572106 other downstream 3353614 48545454 ~ 48570593 (+)
G813071 NA other downstream 3767909 48959749 ~ 48959991 (+)
G813074 etbr2 other downstream 3811479 48962187 ~ 49006710 (+)

Expression


Co-expression Network