LOC110532188 (LOC106572179)


Basic Information

Item Value
gene id LOC110532188
gene name LOC106572179
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 45285980 ~ 45298752 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615872.2
CATCCTAAAAGCCACCCATAtcctgtgtgcgtgcatgcgtgtgtgtcttCAAGCGCTCACTCCTCCGCCTTTCCTCAACCCCTCCTCTTGACAGACCGCAGCCCGTTAGATCTGACTAGAGTGCGTTGTTCATTGTCCATTAACGCAGCAGCGGACAGCTTCCACCCTCACACGGATACACAACCATTTCTTCTCCCTCGTCGCCTTTCCCGTCAGTTACCATGGCGAGCACAGTATCAGCCTACACAGAGAAGATCAAGGAAATGTCCATGATGTCTCTCATCTGCTCCTGCCTATACCCCCAGACATCATACCCCACCACCAACTATCAATTTGGAGACCTGGAGGTGAAGCCCATCAACAAGCGACTGTCGGGCCAGTCCTTTGAGGTGATCCTGAAGTCCCCCACCGACCTGTCCCCGGACAGGCCCAGTCCCCTTGCCTCTCCCCCCGCCCTGACCTCGCCCCCCAAGAGGGATATCTCCCTGGATGAGCTGCAGGGGAGGCTGGAGGccgctgaggagaggaggaagTCCCAGGAGGCTCAGGTGCTGAGGCATTTGGCTGAGCGGAGGGAGCATGAGAAGGAGGTGCTGCACAAGGCCATGGAAGAGAACAACAACTTCAGCAAGATGGCGGAAGAGAAGCTCAACTCCAAAATGGAGGCGAAGAAAGCGAACCGGGAGGCATACCTGAACTCACTGAAGCAGCGGCTCCGTGAGAAGGAGATGCATGCAGCCGAAGTGCGCCGGAACAAGGAGCTGCAAGCAGACCTTTCTGGATAAGAAGGCTTTACTGAAAGGAATTCCCATTTCCCAGCTTATGTGAAGTGTGTTTTTAGCGAGGAATTTTTGTGTCAAAAATCATAATTCTGCTCTACATCCTGCAATCTCATCTGTCATTCAATAGGGAACAAGTTTACCTGCAAGATATCACAACTGTCATAGCTCTTCATCTCTCTACACATCCCTACAGTATgacatttttttctctcactaaAACATCAACACCACCAGCATTTCAAACAGTAGATATTAACATTTCTAAATGGTTGGAATACATTCTAATGGCTGGAATTTCAAATGTGCTgcgcacgcccacacacacatgcacagacacaaacatacatacaattCACACACATATAAACTCAAACACTGACATGCATCGCTTTTTACATAAATGGCATGGATTGTTGAAAGGGAGTCTGTATTGATCTAATTGTGTATTAGACTAATAAAATGTGAGTGTACTGGATGTTGTCAATGTTCCTTTGGGTGTAAGACATAAGGTACTGAAAGGTAACTAGCCCTCTCCCCTAAGAACAATGTCTTATTGTTGGCACAAAAAAAGTTACGCCTGGAAAGAAATTGTTATGTGGATGAAGGACATGCTTAGGCAAATAAACTATAAAGGGAAATAAATGGCTACAgttta

Function

NR:

description
stathmin-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615872.2 True 1437 mRNA 0.48 5 45285980 45298752

Neighbor

gene id symbol gene type direction distance location
chrna4b LOC106572182 coding upstream 94140 45176863 ~ 45191840 (+)
LOC110532183 LOC106572183 coding upstream 166794 45076564 ~ 45119186 (+)
LOC110532184 LOC106572184 coding upstream 200405 45076911 ~ 45085575 (+)
prex1 LOC106572294 coding upstream 212921 44959576 ~ 45073059 (+)
LOC110532181 LOC106572185 coding upstream 326858 44912964 ~ 44959122 (+)
LOC110532189 gmeb2 coding downstream 4614 45303366 ~ 45311274 (+)
LOC118966054 NA coding downstream 17022 45315766 ~ 45318483 (+)
LOC110532191 stk35 coding downstream 107370 45406122 ~ 45424517 (+)
LOC110532193 LOC106572175 coding downstream 163876 45462628 ~ 45484801 (+)
LOC110532192 LOC106572174 coding downstream 186920 45485672 ~ 45494087 (+)
G808793 rtel1 non-coding upstream 32977 45241313 ~ 45253003 (+)
G808783 rtel1 non-coding upstream 48408 45227441 ~ 45237572 (+)
G808777 NA non-coding upstream 64608 45221092 ~ 45221372 (+)
G808724 NA non-coding upstream 124118 45161494 ~ 45161862 (+)
G808863 NA non-coding downstream 59440 45358192 ~ 45358415 (+)
G808869 NA non-coding downstream 67767 45366519 ~ 45366894 (+)
G808874 NA non-coding downstream 75146 45373898 ~ 45374231 (+)
G809234 NA non-coding downstream 300587 45599339 ~ 45604558 (+)
G807841 NA other upstream 832903 44442662 ~ 44453077 (+)
G807677 NA other upstream 1089939 44195715 ~ 44196041 (+)
G805600 NA other upstream 2937194 42346176 ~ 42348786 (+)
G805451 NA other upstream 2953542 42332093 ~ 42332438 (+)
LOC110532114 LOC106572334 other upstream 3261577 42021496 ~ 42027071 (+)
G809685 NA other downstream 835979 46134731 ~ 46135732 (+)
G812143 NA other downstream 2683249 47982001 ~ 47982301 (+)
G812688 LOC106572106 other downstream 3246702 48545454 ~ 48570593 (+)
G813071 NA other downstream 3660997 48959749 ~ 48959991 (+)
G813074 etbr2 other downstream 3704567 48962187 ~ 49006710 (+)

Expression


Co-expression Network