LOC118966054


Basic Information

Item Value
gene id LOC118966054
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 45315766 ~ 45318483 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053260.1
GTGCACTACGGCATATGAAGTCAGATGACATCAAACCTGGATAACAGTTGCTGGACTCAATGCTGACCGCTCAACAGTCGTTCGTTGGTGGTGGCCAAGGATGTGTCTGCGCTACAAGGCTTCTGTAGAACACATTTGGGAAAAATGGCAAGTTTGTCTGAAGACAATTCTCACTCGCTTCCACAATCCACGCGtgctc
>TU920321
GGCTTTGGGTGCACTACGGCATATGAAGTCAGATGACATCAAACCTGGATAACAGTTGCTGGACTCAATGCTGACCGCTCAACAGTCGTTCGTTGGTGGTGGCCAAGGATGTGTCTGCGCTACAAGGCTTCTGTAGAACACATTTGGGAAAAATGGCAAGTTTGTCTGAAGACAATTCTCACTCGCTTCCACAATCCACGCGtgctctccatggtgctgaaatgggcCACGAGCTTTTGCGCACCGCCACAACAAGCTCAACGCTCTACGATTTTTGATTAACAAAAATTACACCATCATAGATACATAAACACACATCAACGTAAAACAACACTTTCTGTTTGTTTCCATTGGATAAAAGCAAAGTTATCTTGTCATGATGTAAAGCAAATCTTACCAGACTGTTGACTGGGATTTCTGTATTGAGGATTTGTTGCGCGCATTGCAGACAATGGGAAGAGCAGTCTGCTTGGGTCGAAGATGGCAAGCTAAGTATCAACACCAGGACATACCACTCCATTTTGCCAAATCCCTGAAATGAAGGAGAAAACGCGAAGAAAACGTCATGTTCACTTGCCAGGGAAAATGTAACACTTGCCTATGAGATTTAGACTTatcacagatttttttttgttttttaaatatccCTCGACAATAAGCATGTATTTGTTTTGAACTTTGATTAGTCTTTGTTTCAATTCCATGTTAGTGGCACAACTTTTCTCTCTTTTGATTGATCAAGTACCATGCGTAATGGTGTGGCCACCACGCTATTCAATTAGTCTACGATGTTAACTGCCAACAGTTTACCAAATTGTAATAGGCTAGTATAATTCTTCACGGGAGCATTTCGATTAATAAACAGGACATTTGCAAGTCCATTACTGATTAT

Function

NR:

description
proenkephalin-B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053260.1 False 199 mRNA 0.49 3 45315774 45317798
TU920321 True 892 lncRNA 0.41 3 45315766 45318483

Neighbor

gene id symbol gene type direction distance location
LOC110532189 gmeb2 coding upstream 4500 45303366 ~ 45311274 (+)
LOC110532188 LOC106572179 coding upstream 17022 45285980 ~ 45298752 (+)
chrna4b LOC106572182 coding upstream 123934 45176863 ~ 45191840 (+)
LOC110532183 LOC106572183 coding upstream 196588 45076564 ~ 45119186 (+)
LOC110532184 LOC106572184 coding upstream 230199 45076911 ~ 45085575 (+)
LOC110532191 stk35 coding downstream 88324 45406122 ~ 45424517 (+)
LOC110532193 LOC106572175 coding downstream 144830 45462628 ~ 45484801 (+)
LOC110532192 LOC106572174 coding downstream 167874 45485672 ~ 45494087 (+)
LOC110532197 cept1 coding downstream 200244 45518042 ~ 45541267 (+)
LOC110532198 dram2 coding downstream 223645 45541443 ~ 45546493 (+)
G808793 rtel1 non-coding upstream 62771 45241313 ~ 45253003 (+)
G808783 rtel1 non-coding upstream 78202 45227441 ~ 45237572 (+)
G808777 NA non-coding upstream 94402 45221092 ~ 45221372 (+)
G808724 NA non-coding upstream 153912 45161494 ~ 45161862 (+)
G808863 NA non-coding downstream 40394 45358192 ~ 45358415 (+)
G808869 NA non-coding downstream 48721 45366519 ~ 45366894 (+)
G808874 NA non-coding downstream 56100 45373898 ~ 45374231 (+)
G809234 NA non-coding downstream 281541 45599339 ~ 45604558 (+)
G809248 LOC106572168 non-coding downstream 298346 45616144 ~ 45616483 (+)
G807841 NA other upstream 862697 44442662 ~ 44453077 (+)
G807677 NA other upstream 1119733 44195715 ~ 44196041 (+)
G805600 NA other upstream 2966988 42346176 ~ 42348786 (+)
G805451 NA other upstream 2983336 42332093 ~ 42332438 (+)
LOC110532114 LOC106572334 other upstream 3291371 42021496 ~ 42027071 (+)
G809685 NA other downstream 816933 46134731 ~ 46135732 (+)
G812143 NA other downstream 2664203 47982001 ~ 47982301 (+)
G812688 LOC106572106 other downstream 3227656 48545454 ~ 48570593 (+)
G813071 NA other downstream 3641951 48959749 ~ 48959991 (+)
G813074 etbr2 other downstream 3685521 48962187 ~ 49006710 (+)

Expression


Co-expression Network