LOC110532192 (LOC106572174)


Basic Information

Item Value
gene id LOC110532192
gene name LOC106572174
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 45485672 ~ 45494087 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615878.2
ATACAAATGTATTGACAAACACGTTCAGTGCCGCATTCAGGTTCTTGCGCAGCTGAGGCTAGAAGACTTCCCCTTATGACAGGCGCAGTATTCTGGCCATCATTGGTTCAGTTTGTACAGTACAAGGAAAGAACCTAAATGGAGCATATTTGAGTCATGGCGAAGGTTTTTCAAATTACTTGAAACCACATGAGGTGGCACCATGGCACATTTGAAATATTGAACCGACCGGAGCACCGAGGGCATGAAACTGGCatcttAAAAACAGCCAATCCTACAGTGATCTCCCAAGTGGCCAGGTCCACCCACAGTAGAGGGAGAGACGGCTAGAGGTAAAGAGACGCCGAAAGATGAGCGGATTGAAAGAGGGAAGAACGGACCCGGGTACCGTTCACCGTGGGAGGGTCACTCTGGTTGTGGACGGTAGCCATTTTGCGGTGGACCCCGCCACCTTCACTGCACACCCCAACACCATGCTAGGAAGAATGTTTGGCCCAGCGCGACATCACAACTTCACCAGGCCCAATGGGAAGGGCGAGTATGAACTGACAGAGGGCATCAGTGCCAGCATCTTTCAGGTCATACTGAACTTTTATCAGACAGGTGTTATGAGGTGTCCCGATGGCGTATCAGTGTCGGAGCTGAGAGAGGCTTGTGATTACCTCTGTATCAACTTCAGTGCCAGCACAGTCAAGTGTCGCGACCTCAGTGCCCTGCTTCATGAGCTGTCCAACGATGGGGCACGAAGGCAGTTTGAGGGATTCCTGGAGGAGCTGGTGGTGCCTACCATGGTGTCATGTgcccagggaggggagagggagtgcCACATCGTGGTTTTGGCCGACGATGACATTGTGGACTGGGATGAGGAACACCCTCCACCCATGGGAGAGGAGTATTCCCAAATTTTGTACAGCTCCAAACTCTACCGCTTCTTCAAGTACATCGAGAACAGAGACGTTGCTAAAACCCTGCTGAAGGAGAGAGGTTTGAAGAACATCCGGATAGGCATTGAGGGGTACCCAACCTATAAGGAGAAAGTGAAGCGGCGTCCGGGAGGAAGGTCAGAGGTCATCTACAACTACGTGCAGCGGCCCTTCATTCAGCTGTCCtgggagaaggaggaagggaagagCCGCCACGTTGACTTCCAGTGCGTCCGCAGCAAGAGCGTGCCCAACCTTGCGGTGCCAGGGGAGGGGGGCGGAGGTGGGGCGGCCTGGGGGGGCACCATGCCCTCCCCGCAGGTGGATGAGCTGGACAGGCTCAACGGGCCAGCGCCCTCTCAACTCCCCCAGACTGCAACCaatgaaagctgagactctcgGACCACACCCCCACCTCAAATCTGCTGCTACCCATCTCATCCCGAGGCTCTTGGACTATTCCCTTCAAACCAGTGGAAGTCGTTATTCCCTTGGAAGCAAGCATATTGGCAAGAGCACAGTGCTTGTCTTCAACAGGGGGCACATTAAAAGTTAAGGTATTGTTGGCCATGTTGGATATATTGCACCTCTGATAACTGCAAGACTGTCCTCCCATACAGAGGGCTATGTTACAGTTCTAACTAGGCACTTTTATTGTTTGGAATGCGAAATCGTCATTTTGGTGGATAGCTTTGAATGTCATATGACTATTTCAGAGATAGCTTTTATACACATACATGTGCAATATATGCACATTTTATGACGTTATGTGTCGTCTGTGATGGTATGCATTTAAAATACCTGCTGTTTTAGTCTCTGTTGTAGGCATGCAAATGAGATGTAGGCCTATGAATGAAGCCAATTTGTTTTACATTCCATTCCAAATGACATGTTCCCATGGCAACATGACCTTATGAATGTGTGCCACGTTCAACATGTTGATGCGTCTGCCATGTTACACTGTCTCCCTGAGCCTGTAGATCCTATAATCAGTTGTAGGCTAGATGAATGTGTGCCTTGAGTAATTAAAGAGCATTATACATATTTTTCATGACAAATGTGATGTGACATGGGAAGTAGCTATGCTGCAGTTCTTTCTTTAGCCCCTTTTATACCTTGTGCTAACatgtgtcctgatcttgtccacatgtTTAAACAGGTGGTGTAGATCTGAATGTGATCAGAGCTTCATGACCATCACCAGAGGTAGTCTGGGATTAATTGATTTGTTGCATGAAAGCTCAGTGGGCAGAGCTTAGTGACAGGTTAGTGGG

Function

NR:

description
BTB/POZ domain-containing protein KCTD20-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615878.2 True 2200 mRNA 0.49 7 45485672 45494087

Neighbor

gene id symbol gene type direction distance location
LOC110532193 LOC106572175 coding upstream 871 45462628 ~ 45484801 (+)
LOC110532191 stk35 coding upstream 61155 45406122 ~ 45424517 (+)
LOC118966054 NA coding upstream 167874 45315766 ~ 45318483 (+)
LOC110532189 gmeb2 coding upstream 174398 45303366 ~ 45311274 (+)
LOC110532188 LOC106572179 coding upstream 186920 45285980 ~ 45298752 (+)
LOC110532197 cept1 coding downstream 23955 45518042 ~ 45541267 (+)
LOC110532198 dram2 coding downstream 47356 45541443 ~ 45546493 (+)
ela2l LOC106572163 coding downstream 277278 45771365 ~ 45775008 (+)
LOC110532211 LOC106572158 coding downstream 664862 46158949 ~ 46185603 (+)
ccdc30 ccdc30 coding downstream 713309 46207396 ~ 46249943 (+)
G808874 NA non-coding upstream 111441 45373898 ~ 45374231 (+)
G808869 NA non-coding upstream 118778 45366519 ~ 45366894 (+)
G808863 NA non-coding upstream 127257 45358192 ~ 45358415 (+)
G808823 NA non-coding upstream 157730 45283986 ~ 45327942 (+)
G809234 NA non-coding downstream 105252 45599339 ~ 45604558 (+)
G809248 LOC106572168 non-coding downstream 122057 45616144 ~ 45616483 (+)
G809249 NA non-coding downstream 122791 45616878 ~ 45617212 (+)
G809256 efhd2 non-coding downstream 137685 45631772 ~ 45715145 (+)
G809267 lrif1 non-coding downstream 146277 45640364 ~ 45643150 (+)
G807841 NA other upstream 1032595 44442662 ~ 44453077 (+)
G807677 NA other upstream 1289631 44195715 ~ 44196041 (+)
G805600 NA other upstream 3136886 42346176 ~ 42348786 (+)
G805451 NA other upstream 3153234 42332093 ~ 42332438 (+)
LOC110532114 LOC106572334 other upstream 3461269 42021496 ~ 42027071 (+)
G809685 NA other downstream 640644 46134731 ~ 46135732 (+)
G812143 NA other downstream 2487914 47982001 ~ 47982301 (+)
G812688 LOC106572106 other downstream 3051367 48545454 ~ 48570593 (+)
G813071 NA other downstream 3465662 48959749 ~ 48959991 (+)
G813074 etbr2 other downstream 3509232 48962187 ~ 49006710 (+)

Expression


Co-expression Network