LOC110532211 (LOC106572158)


Basic Information

Item Value
gene id LOC110532211
gene name LOC106572158
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 46158949 ~ 46185603 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615907.2
CCATAGAGCTAAAACGAAAGCACGTACTTCAGCGACCGTTGGTTTATAAACTGCGATTGGTCGATATTATGGCATAAACTCGATTATCATTGGCCATATATTGTCCGGGAACGAGGAAAATTTAGTTGTAAACGAGGCGCGTGCTTGAAGGACAACGCAGGACTGAAAACAAGCGTGCACCTTTTCAGCACCGATCCTCGTGGATAGCGGTACAGGGCCATTCCACCAATTAATCAGACCAGACAAGCGTGGGGATACGAGCTGCATCGGTTTCTTCGATAATCATAGAGCTACCACAATTGTGTTATTCAGCCAAGCGGCTGCCGTGTTCACTGGGTAGTAGCTGTTGAGTTCCATGAGCGGTGGATTCGAAGCAAAACGGCACAAGCTTTGTTTGCCCTAAGGGCTGCAAGTGCAAGGAGCCATAGCTAGTACTGCTACCAGTATTGTTTTTAGAAGGGAAGAAACTGTGGTGCTCATTGTGATTCAACGGGTTCTTGGATCGAAAGGGACCAGGAATAACGGCCTGCAAATGAAGGGAAGCAAGTGGAAATCGAGTAATTAATCGACCACTAAAAGAACAGCTGTAATCGTggtgttagatttttttttagccACATTGCTTGTTCGTGTAGCTGCACTCTATTGTATGAGCATCTTTGTATTATTCGCGTCAATCTCTGACTAGGATCCCGCGCTCTCGTTCGCCCGCCCGCCACCCTCTCGGCCACAGCTGTGTGTATTCTGTACTATTTTCAATCGGCACGACACAGTTTGATACAAATATGTGTTCTCGGGTTTGGTTTGTGACCGACCGGCGTATCCACCAGGAGTATCCGCAAGTCCAGATCCTTCGGGCTCTGAAACAGCGATGCGCCGAGGAGGATGTTGAATTCCGCTCACTTCTCATGGACCAAATCGTGCTCACCATCAGTGAGGGACAATTAGGTCTGCGGGTGGAGCAGGAGGTGGTGACGTCCTACCCTCAGGTGGCGGTGGTGCGGGTGCCCACCCCCTGGGTGCAGTCGGACAGCGACATCACGGTTCTGCGCCACCTGGAGAAGATGGGCTGCAGGCTGGTCAACCGGCCCCAGGCTATCCTCAACTGCGTCAACAAGTTCTGGACCTTCCAGGAGCTGGCCGGCCACGGGGTCCCCCTCCCAGACACCTTCTCTTACGGAGGACACGAGAACTTCCGCAAGATGATCGACGAGGCGGAACCGCTGGGCTACCCCGTGGTGGTGAAGAACACTCGTGGCCACAGAGGAAAGGCAGTGTTCCTGGCCAGGGACAAGCACCACCTGGCTGACCTGAGCCACCTGATTCGCCACGACGCTCCCTACCTCTTCCAGGAGTACGTGAAAGAGTCGCACGGTCGCGACGTCCGGGTGGTGCTGGTGGGCGGCCGTGTCATTGGCTCCATGCTGCGCTGCTCCACCGACGGACGCATGCAGAGCAACTGCTCCCTGGGCGGCGTGGGGATGATGTGCCCGCTGAGCGAGCAGGGCAAGCAGCTGGCGGTGCAGGTGTCCAACATCCTGGGCATGGACGTGTGCGGCATCGACCTGCTGCAGCTCAACGACGGCTCGTTCGTGGTGTGCGAGGCCAACGCCAACGTGGGCTTCATCGCCTTCGACCAGGCGTGTGGCATGGACGTGGCGGGCATCGTGGCCGACCATGCCCTCTCGCTGCTGCCCAGCCGCCTCACGCGCAAGATGTCGCTGCTCTCGGTGGTGTCCAGCGCCAGCGAGACGAGCAGCGAGCCCGAGGTGTGCCCGGCAGTCAGCAGCGTGCTGCCCGAGGCCGTGTGCAACATGAGCGTGGGCTCTACTTCTAGCGAGAGCGACCCCGAGCTGGCCGATACCACCCCTCAGCCCCCGAGCCGTCAAGCTGGCCCCAGCCCGGTGCTACCCAACCTCCCCGACCCGGCCTACAACTTCAACACCCTCCTTGCCAACGAGATAAAATTATTGACTGAGTGAGCTGGACACAGCcaaggcacgcacgcacactcacacacactcaaagacacacacacacacacacacagacacacacacttacaaacacacacctgaacaTTTGGCGGTGGACATTCCTGTTGCAGAGCACAAACACAAACTCCAATACACGTTACACAGGCAGGATGTTACATGCAAAAGCATGAGctgaacaaacaaaaatgtaatgaaaaatgCTATGACCACATAAACTGACATGACGAACAGATGTAGACGCACGCGCCTTCTCATACTAACTCCCCCCATAAACACATAGAGATCTAAGGCTGCTCCCCtgactcttctcctcttctcccccactGCAAACAACCCAGTTAGTTTACAACTGCAGTTGGTGGCAGAAGTGGGATCCAGAAGGTTAGCTGAATTACGGAATCTTTTTGTTTTCAATTGCTTTGTGAGGGTGAGTTGAGCAAGAGTGTTTTTTTTTGGGAGAACCCTAAAGAGCGTTACATACACCAGCACATAGTCAACGGAAATCTGTCCATCTTATTGAGCGAGCACACACTACAAAACTGTATGTTGGAGAATGAGATTGATGCGTGGTCGTCGTTGTAGATCAACCACTGAGGACGTAGCCAGGCTTGATTTACTGTTGGTGAAATGAATTGTTTTGCATGGGATTTTCTCCATGACCGGGAGAGGGGTACACACAGAGGACTAGATAGACTGCCCACCAGCTCCATGTAGCAGAGGACAGACAGGTTACACTGTCACGGGGACTATTAAGTGCAGATTGGGGCCAATTCCATCTTCTACCTCAGTTAATTCTGGAAATGGGATGATTGAAAATCATAAAATACAAATCGACATCACATTTCATTTGCATTCAATTCATGAATTGTCTGGAATCAAAATGgaatttcaccccccccccccccccccccctaacgcTGACGAGGAGCTCCTAAACACTGGATCTATGGTCTGACTTCCCTTCCCCTAACTCTTAATTGAAGATATCAGAACATCTTAAAGCTCATTAGAATAACAAAACTGACATAGGGACATTGCTTAGGGGCACCTtgtagagtaacaacactacactaTTTCCTGTTAAGAGAATGCATCTAGAAACACATAAACATAGGTCAAGCACAATTGACCCAAAATCGAGCCTGCAGTCACTCTGTTTTCAATGTCATGTTTTTAGGGGCTTGTTTTTATtcgctttaaaaaataaataaaaaaataagcttTTTACAGGAACAATAGTCAAACGAAGACACGGTTTATTTTTCTTCATTTTATAGTTCTCGGGAAGAAAGTTGGATCcgtctaggaacagtgagttacaGTGCGGAAGCTGTCACTACACCTACAAGAATAATATACCTCAAAACAGAACTTCTCACTGCCATAGAATAAACTACTTTGAGTCATACATATCTGCCAGCATCCTTGTGGTTTCAAGTGAGCCTTGACTTTGCAAGCTTTGATCCATCCATAGGATGTAAATATAGTCAAGTAAATtgtttgtaaataataattttagaAGCGTTTATGCTTACTAGTATCGGGCTGAAATGAAAATCCTAGGGGCTGAAATAACTGTAAACTTTCTAAACTTAAACATTTTGGTAAGCTATTGTGTACAACAGATTGGTTTGTACGGAACATGCAATGTCAAAAATAAAGTTTTAACAAAGAACATGCGTGCTAACATTTCTGTGGATTTGGCTAAATGCGGTTAATCAGCCTAATGTTTTGGCCGATGACAAATTACTGTTTATTCTTCTCAAGTGAGCTAAACTTCATAAACTTGTTGTACAAATAAAATGCAAAACAATACTATCTTTTTTTACAGTGTGTTTGATAGAATGTTACCGTTTCATTCCTCAAAAGGAACACTTCTCCAGGGATACCTGTGGCCTAGAGCTTCTCTCTTGAGCTGTTGGTTAATTGCGGTAAATCTTCTACCACTCAGCCTTAAAAAAATACCTATCCACTACGTATCAACTCTGGGGCATCCGCCATCAACCAAAAAGCATTCGCAGCAATCATCCAAAGCACAAGCCACCCTACTTTGTGCCACTTAGTGACTAGCCATTATTGTTGAGGTCCATAACCCATATGTAGAAGgcttctatgtcaaacagttgaTTCTCAAACATAACTCAGGGAAGCAGCCTTGATCTCATCCCCACTCCTAAGGCATGTGACATATCCATCCTAGCTACAGATCTGCCTAAAATGTGTATTGatgacaaacaaaaaaataaatgttaaactATTAAAAAATGTGGTGTACCATGAAGGTTAACGTGCACTTTTTTTCCCCTTGCTTGTTTTATGATGTTCAGTGTTTTTTCCGCTAATCTATGGTATTTTTTAAGGAAAAAAGTGGTTTGTGTGCACTAATCTTGTCTCAAATAAAGTGAGGCCGCTGTGAAGCTTGA

Function

NR:

description
PREDICTED: beta-citrylglutamate synthase B-like

GO: NA

KEGG:

id description
K18311 RIMKLA, NAAGS-II; N-acetylaspartylglutamate/N-acetylaspartylglutamylglutamate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615907.2 True 4420 mRNA 0.48 5 46158949 46185603

Neighbor

gene id symbol gene type direction distance location
ela2l LOC106572163 coding upstream 383941 45771365 ~ 45775008 (+)
LOC110532198 dram2 coding upstream 612456 45541443 ~ 45546493 (+)
LOC110532197 cept1 coding upstream 617682 45518042 ~ 45541267 (+)
LOC110532192 LOC106572174 coding upstream 664862 45485672 ~ 45494087 (+)
LOC110532193 LOC106572175 coding upstream 674148 45462628 ~ 45484801 (+)
ccdc30 ccdc30 coding downstream 21793 46207396 ~ 46249943 (+)
LOC110532217 LOC106572155 coding downstream 77604 46263207 ~ 46277905 (+)
LOC118966055 NA coding downstream 115661 46301264 ~ 46304747 (+)
LOC118966056 NA coding downstream 123409 46309012 ~ 46310775 (+)
LOC110532219 LOC106572152 coding downstream 132553 46318156 ~ 46354342 (+)
G809691 NA non-coding upstream 14270 46144463 ~ 46144679 (+)
G809687 NA non-coding upstream 17749 46141000 ~ 46141200 (+)
G809666 NA non-coding upstream 52357 46106392 ~ 46106592 (+)
G809617 NA non-coding upstream 117694 46040645 ~ 46041255 (+)
G809439 NA non-coding upstream 317645 45788180 ~ 45841304 (+)
G809979 NA non-coding downstream 17125 46202728 ~ 46203412 (+)
G809980 emp3 non-coding downstream 19005 46204608 ~ 46205463 (+)
G810023 NA non-coding downstream 64709 46250312 ~ 46252923 (+)
G810027 NA non-coding downstream 67937 46253540 ~ 46254132 (+)
G810022 NA non-coding downstream 68989 46254592 ~ 46256113 (+)
G809685 NA other upstream 23217 46134731 ~ 46135732 (+)
G807841 NA other upstream 1705872 44442662 ~ 44453077 (+)
G807677 NA other upstream 1962908 44195715 ~ 44196041 (+)
G805600 NA other upstream 3810163 42346176 ~ 42348786 (+)
G805451 NA other upstream 3826511 42332093 ~ 42332438 (+)
G812143 NA other downstream 1796398 47982001 ~ 47982301 (+)
G812688 LOC106572106 other downstream 2359851 48545454 ~ 48570593 (+)
G813071 NA other downstream 2774146 48959749 ~ 48959991 (+)
G813074 etbr2 other downstream 2817716 48962187 ~ 49006710 (+)
G813139 NA other downstream 2929534 49115137 ~ 49115618 (+)

Expression


Co-expression Network