LOC110532213 (emp3)


Basic Information

Item Value
gene id LOC110532213
gene name emp3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 46202726 ~ 46206704 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615909.2
cctcctcctttcctcctcatgGAAACTTTGGAAATggagtgatttaaaaaaataaaggggGAGTGgcaagagaggaaaggagaggaccaCCAGAGGGGAAACTTTTACAGAGAGGCTGATTCAGAGGAGCGTGAAATACACAAACTAAGGGACCCTGCTCAGATGGCGTACTTGCTGATGTTTGTGACCCTGCTGCATCTAATCACCTTGGCCATGCTCTTCATTGCCACCATGGAGAAGTCCTGGTGGGTATGGGATGGGATGGAGAACTCAGATCTCTGGTATAACTGTAGATTTGACAATGACACTGGAACCTGGTTGTGTGCCTCCTCCAAGGAGACTGAGTGGCTCCAATCAGTCCAGGTGTTGATGGTGCTGTCTGTGGTCTTCTCTTCGGTTTCCTTTCTGGTTTTCCTTGGGCAGCTCTTCACAATGTCCAAAGGGGGGCTATTCTACTTCACCGGGTTATGTCAAGTCTTTGCAGGTCTCACTGCATTTGCGGCTGCTCTCATCTACACGTTGCACAACCAAGAGATCCTCCAGGACTCACGAAAGCTGACCGAGGGACATTTTGGCTACTGTTTTATACTGGCCTGGGTGTGTGTGCCGCTGCTACTCATCAGTGGAGTCATGTACATCCACCTACGTAAGAAAGAGTGACCATGGAAGAGAGGTGAATACTGAGCACAAACAGAAAAGCATAGTTGTTGACATTGAGCTATAATAATATCAGAGGTGATGGAGCTCAATCACATGAGTACAGATCTGGCTCTGTTACTTTGTTGGCATTTAGAAGCAGCTATTTCTGGTCAATCCAAATATTGATTGGATCTTGGATAAAAGCGAATCTGGTGAAGCTTTTAAATATAGCATGTTTAGTAGCCTATAGAGCATCGGTATACAGTGCTACAggcaattatatatatttttcctatTTCCAAAATATCTGTGTCTGAAAAAGTCTGAAAGCTCCAAGTCAGTATTTATTGTAAATCTGGGTGACTTAGGAAGCCAATGATGACAACTGCCAAATAAGTGTTGCTGATATATTGCAGAATCAAGCTTGTTTTGATTTGAAATGTATGTATATGAATAGGGAAATATATTTTTGTACTTGCAATATGTAGTCCTATCAGCTAGAGCTGCTCTAACTTTCCTAAATAAAACACATAGAATATG

Function

symbol description
emp3 Involved in bleb assembly and cell death. Located in plasma membrane.

NR:

description
Epithelial membrane protein 3 precursor

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615909.2 True 1179 mRNA 0.43 5 46202726 46206704

Neighbor

gene id symbol gene type direction distance location
zmynd12 zmynd12 coding downstream 2476 46187156 ~ 46200250 (-)
LOC110532208 LOC106572161 coding downstream 161461 45816274 ~ 46041265 (-)
tmem51a LOC106572162 coding downstream 396862 45793209 ~ 45805864 (-)
ela2 LOC106572326 coding downstream 438708 45760116 ~ 45764018 (-)
fhad1 LOC106572164 coding downstream 447154 45719588 ~ 45755572 (-)
LOC110532215 LOC106572154 coding upstream 51331 46256999 ~ 46263834 (-)
alas2 alas2 coding upstream 98755 46305459 ~ 46317525 (-)
LOC110532223 LOC100380856 coding upstream 186397 46393101 ~ 46525481 (-)
LOC110531189 pigt coding upstream 438086 46644716 ~ 46656973 (-)
LOC110532229 sycp2 coding upstream 512858 46719562 ~ 46781807 (-)
G809974 NA non-coding downstream 51825 46150656 ~ 46150901 (-)
G809971 NA non-coding downstream 54112 46148166 ~ 46148614 (-)
G809967 NA non-coding downstream 60230 46142297 ~ 46142496 (-)
G809966 NA non-coding downstream 62622 46139856 ~ 46140104 (-)
G809940 NA non-coding downstream 96140 46106362 ~ 46106586 (-)
G810560 NA non-coding upstream 43347 46250051 ~ 46252928 (-)
G810563 NA non-coding upstream 47888 46253514 ~ 46256922 (-)
G810595 NA non-coding upstream 96019 46302723 ~ 46302961 (-)
G810596 NA non-coding upstream 97433 46304137 ~ 46304413 (-)
pdyn pdyn other downstream 883960 45316564 ~ 45318766 (-)
G809071 LOC106572179 other downstream 904876 45295856 ~ 45298740 (-)
G808375 NA other downstream 1565880 44634559 ~ 44636846 (-)
G807941 NA other downstream 1840560 44361416 ~ 44362166 (-)
G811300 NA other upstream 972100 47178804 ~ 47181797 (-)
LOC110531190 clcn6 other upstream 1456361 47642136 ~ 47676649 (-)
LOC110532252 fkb1a other upstream 2071470 48278174 ~ 48286453 (-)
G812840 NA other upstream 2301941 48508645 ~ 48509094 (-)

Expression


Co-expression Network