LOC110532217 (LOC106572155)


Basic Information

Item Value
gene id LOC110532217
gene name LOC106572155
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 46263207 ~ 46277905 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615923.2
AATAGCCCGGCCTCCCCACCTCTTAAAAAACGGGACACTTCCTAAACAGACCATGCCCTGCAAATAGCACGCAAATAGGTGTTGACACTAGCCTGTCTTGACTCTGTGCGGATTTGCACTGAGGAGATGCTAAAGAAACAACCGGAAAGTACCTGCAATGAATGTCCAGCAGGCTTTCACATTGAAAAAGGAACCTCCAAATGCATAAAATGTATTGCGGGCAAAGAATTCGCTGCAATACAAAATTATGATGTAGCTTGTAAACGCTGTAAAGCATGTGATGACAGAGCCTCTCAAATGGTGGTGAAGAGTTGTGAGCCCAAGAATGACACTGAATGTGGCTGCATGGAGAGTTACTACCCAAAGAAATCCAGAAATGGGTTGAATTGCTTCAAATGTCAAATTAAAGACTGTTCCAAATATACAGAATGTCGCTCCTTCTGCACCATTACTACGACTCAGAGACTCCCAACCTTGACACCCTTGACACCCTTGACATCCAACCCCAGCATCACTCAAACAGGTCCAGTCCATTATCCCCTTCTGACCATCGGGTATGTCTTTGTGGTTGTCCTGGTGACCATTCTGTTATTTGCCGGTCTCCTTGTCCTGACTAAGGTGCATGGCTGTTGTGCGACCCCTGAAAAGGACCTCCAGTTGCCTACAAGGGACACATCAGCCAACGGTCAGCCAAATGGCCCAACATCACTGACACTGAATATTACTCAAGGGATTCCCATGACGACATTCTCTCACAGTGCTGCCAAGACGGAGTATCGCACCCTTGTCACACCCCTGTTGCCAGGCAGAGAGCCCAGAATCCCTCGACAGGAGACCCAGGAGGAGCGCTGGCCCGCCAAGGTGTTGTACGCCATCATCAAGGAGGTGCCTCTGCGGCGCTGGAAGGAGTTCCTGCGCCTGCTCTCTGTGCCCGACCGACATCTGGAGCGTGTGGATCTGGAGCCGGGCCTAGGCTCCATGGAACGGCAGTACCAGATGCTGCGGCTGTGGAGCCAGGGCCCGGCTGCAGGCCTGGAGGatgtctactctgctctgctctacatgGACCTGGCCAGCTGTGCCCACCAGCTGCAGGACAGCCTGGAGCAGCTGCAAGCGCTCCAGTTGATAGCCCCAACCAATGACATCCCTGCAGAGAACCACAGAGTCTGTAGGCTTACTTAGCCCGTGTCACATCACCCCAGCACCACCACATAGGATTGTGGAGGCTGCTGGGACATCACTTATGACTTCACCACAGAATAAGATCATACCCAGATGTGAATATGACATCATGACAGCATCATAAGACCATGAAGGCTGttcttttcttcttcttttgaAATAGATTTGAgtctttttacattttatttacagTAATTCACAAAtgagaatgagagactgatggagagagCGAATTAGACATAGATCAAACCCCCACCACCAAGGACCTGTGACATCAGGAGTCGGCAGTTCTACCACTACTCTATTCACGGTGCTAGAAGCGTCCCTCACCCACCGAACTGTAAATATGATGT
>XM_021615922.2
ACTTAAATAGAACTGCTTGCTTACGTATGGTTGTACCAGCAATGGAAACCAGTATTTTATCTGACTGAGTTTCCTGTTGCCTTATCAGTTCTCTGAAGTCTTGAACGAGCTGACACTATAGACTTCCTTTGACCTAATTCTAACTCATCACAGCGTATTAAGAGCCATTTTAGCTTTTTTGTTCAAATTTCTACTAGGAAATTGGCAAATGGCTAGCTAGAATGCTGCAAACATTTTGTATTGACTCGCTATGTTTTTTTGGCTATAGTCTTTTTAATATTGATCTTAAGTTTTGTTTTATGATTGAGTTGAGTACATCCATTTATTTCAGATGAGAGAAGCAAACCACTGTCTACACTTTATCATTTTAAAGTATTTTCAAAATGTGGTTCTATGTGTTGGTGTTGACACTAGCCTGTCTTGACTCTGTGCGGATTTGCACTGAGGAGATGCTAAAGAAACAACCGGAAAGTACCTGCAATGAATGTCCAGCAGGCTTTCACATTGAAAAAGGAACCTCCAAATGCATAAAATGTATTGCGGGCAAAGAATTCGCTGCAATACAAAATTATGATGTAGCTTGTAAACGCTGTAAAGCATGTGATGACAGAGCCTCTCAAATGGTGGTGAAGAGTTGTGAGCCCAAGAATGACACTGAATGTGGCTGCATGGAGAGTTACTACCCAAAGAAATCCAGAAATGGGTTGAATTGCTTCAAATGTCAAATTAAAGACTGTTCCAAATATACAGAATGTCGCTCCTTCTGCACCATTACTACGACTCAGAGACTCCCAACCTTGACACCCTTGACACCCTTGACATCCAACCCCAGCATCACTCAAACAGGTCCAGTCCATTATCCCCTTCTGACCATCGGGTATGTCTTTGTGGTTGTCCTGGTGACCATTCTGTTATTTGCCGGTCTCCTTGTCCTGACTAAGGTGCATGGCTGTTGTGCGACCCCTGAAAAGGACCTCCAGTTGCCTACAAGGGACACATCAGCCAACGGTCAGCCAAATGGCCCAACATCACTGACACTGAATATTACTCAAGGGATTCCCATGACGACATTCTCTCACAGTGCTGCCAAGACGGAGTATCGCACCCTTGTCACACCCCTGTTGCCAGGCAGAGAGCCCAGAATCCCTCGACAGGAGACCCAGGAGGAGCGCTGGCCCGCCAAGGTGTTGTACGCCATCATCAAGGAGGTGCCTCTGCGGCGCTGGAAGGAGTTCCTGCGCCTGCTCTCTGTGCCCGACCGACATCTGGAGCGTGTGGATCTGGAGCCGGGCCTAGGCTCCATGGAACGGCAGTACCAGATGCTGCGGCTGTGGAGCCAGGGCCCGGCTGCAGGCCTGGAGGatgtctactctgctctgctctacatgGACCTGGCCAGCTGTGCCCACCAGCTGCAGGACAGCCTGGAGCAGCTGCAAGCGCTCCAGTTGATAGCCCCAACCAATGACATCCCTGCAGAGAACCACAGAGTCTGTAGGCTTACTTAGCCCGTGTCACATCACCCCAGCACCACCACATAGGATTGTGGAGGCTGCTGGGACATCACTTATGACTTCACCACAGAATAAGATCATACCCAGATGTGAATATGACATCATGACAGCATCATAAGACCATGAAGGCTGttcttttcttcttcttttgaAATAGATTTGAgtctttttacattttatttacagTAATTCACAAAtgagaatgagagactgatggagagagCGAATTAGACATAGATCAAACCCCCACCACCAAGGACCTGTGACATCAGGAGTCGGCAGTTCTACCACTACTCTATTCACGGTGCTAGAAGCGTCCCTCACCCACCGAACTGTAAATATGATGT

Function

NR:

description
tumor necrosis factor receptor superfamily member 25-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615923.2 False 1538 mRNA 0.50 9 46263207 46277905
XM_021615922.2 True 1861 mRNA 0.47 9 46268997 46277905

Neighbor

gene id symbol gene type direction distance location
ccdc30 ccdc30 coding upstream 13264 46207396 ~ 46249943 (+)
LOC110532211 LOC106572158 coding upstream 77604 46158949 ~ 46185603 (+)
ela2l LOC106572163 coding upstream 488199 45771365 ~ 45775008 (+)
LOC110532198 dram2 coding upstream 716714 45541443 ~ 45546493 (+)
LOC110532197 cept1 coding upstream 721940 45518042 ~ 45541267 (+)
LOC118966055 NA coding downstream 23359 46301264 ~ 46304747 (+)
LOC118966056 NA coding downstream 31107 46309012 ~ 46310775 (+)
LOC110532219 LOC106572152 coding downstream 40251 46318156 ~ 46354342 (+)
LOC110532220 LOC106572151 coding downstream 83108 46361013 ~ 46371475 (+)
LOC110532221 LOC106572324 coding downstream 108928 46386833 ~ 46389138 (+)
G810057 NA non-coding upstream 1150 46261772 ~ 46262057 (+)
G810056 LOC105013805 non-coding upstream 1467 46261501 ~ 46261740 (+)
G810030 NA non-coding upstream 5125 46257728 ~ 46258082 (+)
G810024 NA non-coding upstream 5694 46256330 ~ 46257513 (+)
G810022 NA non-coding upstream 7094 46254592 ~ 46256113 (+)
G810076 NA non-coding downstream 17041 46294946 ~ 46295212 (+)
G810083 NA non-coding downstream 25059 46302964 ~ 46303164 (+)
G810017 alas2 non-coding downstream 27527 46305432 ~ 46316331 (+)
G810016 NA non-coding downstream 61088 46338993 ~ 46433129 (+)
G810112 NA non-coding downstream 115252 46393157 ~ 46394599 (+)
G809685 NA other upstream 127475 46134731 ~ 46135732 (+)
G807841 NA other upstream 1810130 44442662 ~ 44453077 (+)
G807677 NA other upstream 2067166 44195715 ~ 44196041 (+)
G805600 NA other upstream 3914421 42346176 ~ 42348786 (+)
G805451 NA other upstream 3930769 42332093 ~ 42332438 (+)
G812143 NA other downstream 1704096 47982001 ~ 47982301 (+)
G812688 LOC106572106 other downstream 2267549 48545454 ~ 48570593 (+)
G813071 NA other downstream 2681844 48959749 ~ 48959991 (+)
G813074 etbr2 other downstream 2725414 48962187 ~ 49006710 (+)
G813139 NA other downstream 2837232 49115137 ~ 49115618 (+)

Expression


Co-expression Network