LOC118966055


Basic Information

Item Value
gene id LOC118966055
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 46301264 ~ 46304747 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988151.1
AAATAAGCGCCAACGCCATCACCAAAGACATCCTGTCGCTCAAAGACAAGACCAGGAAACTGGTCTGTGATTGGCTGCAGCAATACTGCAGGACCTATCTGACGGAGATCCTGGCGACTAAGGCCGCCACCTGCCAGGAAGAAGAGCTCCGAGAGGCCTGTCATGACGGGCCTTTTCGGGTCAGGTTACCGTGGATCATAATCCTACAGAGATATCTCTCACACCCACCAGCGAGAGGTATGGAATGGGGAGTTTTATGACAACTCCCGCTCATTGTAAATCTTAAGGCAGCAGACAAAATCCCTTTTGTCCTGTCAGTATGGAGGGAGGGAATGTATGATGGACCTATGGAGAACCTACCTCTGAACATTAACATGCAATAAATGGACTTTGGGACAATATGTTTCGTCAGCCAAAATGGTAGTagtgacgatagatggaatatgaaaatgaatgtcctttttgttatgttattaaaAGTTAAATGACGACGTTataacgaaaacattgtaacttgaaGAGTTTTCACAAGATATGCCTGATGTTTGCATATTGTACGTcgtgtggaaaatgtccagatcaaagatcatgtttttgtaaagatgaaatgttagaagttagttgtctaaattgGATCTGAGTAAAATCCAGACCTTGCCTCGTAACTAGTTACGCCCAGAGAACTTGCCCTAAAGACAGAAACGCCCatttctgacccaagggtataaaacatGTGAGTTAAGAAGTAACATCAGACTAAGTGACCACGAGCTGCAGCCAAGGTTCAAATTAGTTGTAACCCAAAATTCAACACGAGGTTGAAGAAGACAAAGGAACCTTTTCACAATCTATGCTAcagatgagtagctgtgtctaagaggGTGAATTCAAGCAGGACCACCCGGTTACCACTCTCCAAGGAATCAGGTGGCTACACTGCTTTCATTCCCACGCTGGAACCATGTACACGGCTGATTAGCCGTCCTCCGAAGAACCCTTTTCAGAGCAAAGGCGAGGAAACAGACCCCTAATAGAAAGGACACTGACATTGTGTAGACAAACAGAGAGTTACACCCGGTAACCGAAGACGTGCCGTCATCAGAGAAGTCGGAACCGAGTCCACGAAGAGAAACCCCATCGGAGACCTTcaacacGTGAGATGAAAGCAGCAAGAGCTCACCTGACCTAGGTGTTTAGCCAGGAACCCTGGGAGGCTGCAGCTCAGGCCAGGATAGACGTGGTGGAGTCCTGGCAACAGaagtaccgcagggcagctggcAGGCTGGCCGAAAAAGAACCCTCCACTTTCGACTTCCTGCTGAGCCTCATTCCCCCGAGTCACAGGAAACGCATGGCACAAGCAGCAGCCCAGGAAGCAGGGAGTGCCCTTGCTCTCATGACCGTGGCTGTGAGAGGGGCGGGCAAGCTCCAACCACAGTACCTGTGTCAAAGGGCCTCTTGCTTCACCCAGCTTGAATTGcatgaacaggccgtggctgaCCTGGATTGGGTCATCCAGAGCCATGGGGGCCCCTCCGACGCTGCTTGCCGAGCCTCAGAGGAGCCGCAAATCTGGATCGAGGACCTGTGCCAGCGAGGCCGCAGCCTGGTGCTGTGCTCCTGTGAGGGGCCTGCCCCTGATGACTTCACCCGGGCCCTGGCACTCCATCGTTGCAAGGCCCTGCAGTGTGTGGAGGCCGGGcttgtgactttcaatgtggcaccgtcatagaatgccacctttccaacaagtcagttcttcaaatttctgccctgctcgagctgccccggtcaactgtaagtgctgttattgtgaatttcGAAACGTCTAGGTGCAActacggctcagccgtgaaggccacacaagctcacagaatgtgaTCGCCAAGTATTGAGGCGCTTCTTCGGTTGCAACATTCAcaaccaagttccaaactgcctctggaagcaaagtcag

Function

NR:

description
tetratricopeptide repeat protein 34-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988151.1 True 1957 mRNA 0.50 3 46301264 46304747

Neighbor

gene id symbol gene type direction distance location
LOC110532217 LOC106572155 coding upstream 23359 46263207 ~ 46277905 (+)
ccdc30 ccdc30 coding upstream 51321 46207396 ~ 46249943 (+)
LOC110532211 LOC106572158 coding upstream 115661 46158949 ~ 46185603 (+)
ela2l LOC106572163 coding upstream 526256 45771365 ~ 45775008 (+)
LOC110532198 dram2 coding upstream 754771 45541443 ~ 45546493 (+)
LOC118966056 NA coding downstream 4265 46309012 ~ 46310775 (+)
LOC110532219 LOC106572152 coding downstream 13409 46318156 ~ 46354342 (+)
LOC110532220 LOC106572151 coding downstream 56266 46361013 ~ 46371475 (+)
LOC110532221 LOC106572324 coding downstream 82086 46386833 ~ 46389138 (+)
LOC110532224 LOC106572149 coding downstream 297067 46601814 ~ 46630668 (+)
G810076 NA non-coding upstream 6052 46294946 ~ 46295212 (+)
G810059 NA non-coding upstream 36362 46264410 ~ 46264902 (+)
G810057 NA non-coding upstream 39207 46261772 ~ 46262057 (+)
G810056 LOC105013805 non-coding upstream 39524 46261501 ~ 46261740 (+)
G810030 NA non-coding upstream 43182 46257728 ~ 46258082 (+)
G810017 alas2 non-coding downstream 685 46305432 ~ 46316331 (+)
G810016 NA non-coding downstream 34246 46338993 ~ 46433129 (+)
G810112 NA non-coding downstream 88410 46393157 ~ 46394599 (+)
G810243 NA non-coding downstream 262566 46567313 ~ 46567630 (+)
G810247 NA non-coding downstream 274954 46579701 ~ 46585007 (+)
G809685 NA other upstream 165532 46134731 ~ 46135732 (+)
G807841 NA other upstream 1848187 44442662 ~ 44453077 (+)
G807677 NA other upstream 2105223 44195715 ~ 44196041 (+)
G805600 NA other upstream 3952478 42346176 ~ 42348786 (+)
G805451 NA other upstream 3968826 42332093 ~ 42332438 (+)
G812143 NA other downstream 1677254 47982001 ~ 47982301 (+)
G812688 LOC106572106 other downstream 2240707 48545454 ~ 48570593 (+)
G813071 NA other downstream 2655002 48959749 ~ 48959991 (+)
G813074 etbr2 other downstream 2698572 48962187 ~ 49006710 (+)
G813139 NA other downstream 2810390 49115137 ~ 49115618 (+)

Expression


Co-expression Network