LOC110532221 (LOC106572324)


Basic Information

Item Value
gene id LOC110532221
gene name LOC106572324
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 46386833 ~ 46389138 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615928.2
TTCCATCAGAAGTCATTACAGAGACTGTTTATAACTTTCACTCTCACTGCGACACACAACTGGAATGTTTCTCCTTACAAATACCAAGAGACTAAACAATTACAAGGACATACCATCTAAACTGTCAATTCTAAGCGCAGCTGTTAAAAGTGAAGGTTGAAAAGTTGATCAAAGTTTATTGACTGTATTTTAGCTTCTGGATAATCTACAATGGCAACTCCTGCTTCTGTCCACGAGCTGCTGCTGGACACTCTGGATAGCTTGGTCTCAAGCGAGCTGAAGAGATTTCAGTATCTACTGACTAAGAACATGTTAGATGGCTGGTTTCCTATTCCTAAGAGCCGTCTGGAGAACGCTGACAGGGAGGACACCGTGGAGAAGATGGTCAGTGCCTACAGCCATGAAGGAGCAGTGAAGATCTCACTGACGATCCTGAGGAAGATGGGCCAGAATGATCTTGCTATGAAGCTGGAAAGAGGCACTCTAGAAGAGGTACCAGCACTGAAAAAGACTGTGTCTCATCAAAAGGAAGAACTGAAATCCAATTTAGAGAGTCTTCGAAAGAATCAAGAAACGTACAAAAGCATGGAGGTCCACATTAAGAAGCAACGTGCGGACGCAGAGAGGCAGATGAGGGAGCAGTTTGAAAAGTTCCACCGGTTTCTGCGAGAGGAAGAAGAGGCCAGACTGGTTGCGctcagggaggaagaggagcagaaGGGCAGGGCTATTGCCAGCGAGATGGAGAGAATTCTCAAGCAGATCTCTTCTCTTGAACAGGACCTGCAGAAAGACGACCACACATTCCCTGTGAGCTACAAATACCAGAACAGCACATTGCCGGGTACACAGCAGGTCTCAGGGGTGCTTATCGACATGGCCAAACACCTGGGAAACCTGCAGTTCAGAGTGTGGGAGAAGATGAAGGAGATAGTCCAATTCACTCCTGTGATTCTGAACCCCAACACTGCAAACCGCTGGCTCTCTGTGTCTGATAATCTGACCAGTGTGAGATTTAATAACATAGGTCAGCAAATCATTGACAACCCAGAGAGGTTTGCACAGTATGCCAAGGTTCTGGGCTCAGAGGGCTTCAGCTCAGGGAAGCACAtctgggaggtggaggtgggggaccATCCTGAGTGGAACCTGGGAGTAGCTAAAGAAACCATTGATAGGAAGGGGGAGATTCTTGCTTCACCAGCTTATGGAATCTGGGCTATACTGAACAGGAATGGTGTGTATCAAAGTGGAAAGGGTGAGCCCCTTGCTTTTGAGAAGCTGAAGAGGATCCGAGTGCAGCTGGACTTCACCAGTGGGGAGGTGTCCTTCTACGACCCCAAAGATATGACACACATCTATACTCATAAAGACACGTTTGCTGAGAGACTGTACCCATACTTTCTTGTTGGACTGGCTGGTGGTGCCAACAACCCTGATATACATATCTGCCAATCAGAGGTGTCTCTGACAGTAATGGCATCTCAGTGAGGCATGTGATCACATCTTACAATTGAAACTTATCAAAATGAATTCAAAGGCTAGAATCTTGTGCTGAAAAAAAACCCATTTGGGATAATGATTTGAAATAATGCCTTGAACAGAACAGTAatttaagaaaataaataaataacataattTATGCTTAGCTAATCCCCGTCTGTGAGACTTGTGATGTTAATCGTAGGGGCTCGATTCAATCCATTTTGCTGAAGTTCAGTGCTATATGAAATCTAAAGGTAATTCCAACTGAGCCGGGATATGCAGcttttaccgtgaatgcagtctccgtgACCGCGGAAACATTGCCTTTCACATTTCAATCACTCTATAGAGCTGAACTtcagcgatacggattgaatcaaGCCCGAgttttgatgtaaaaaatgtgacCAGAATTCAGACTGCTTGATTGGTTAGTGGCTTTCAGTACGACATGATACACATGCATTCTTGTATATTTTTCCCATTGCTGAATTCTAACCTCAGTGTAATAGCATGTTCGATTTCAGGGCTGTGCTGCTAACCTCAAAACATTtgacctgggtcatgttcattcgATACCAAATGGAaggaaacagactgaaacaggaaggTGAGACCTGGACTTTTAGTTTTCTGTTGCAATAGGGGCCCTGGACATATACCCCAGCACACTTATCACATCCCTTCCAGCAGATGCCATTAGAGTATAACAAATGGAAGACCAATTCAAATGGAAAGGTCAAATCAGTTCACCCCAGGAAATAGTGAGCACCAATTTGCTTTTGTGTTTTCTTCTATTAGATTAAAGAGATCCTCttgta

Function

NR:

description
tripartite motif-containing protein 35-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615928.2 True 2306 mRNA 0.44 1 46386833 46389138
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110532220 LOC106572151 coding upstream 15358 46361013 ~ 46371475 (+)
LOC110532219 LOC106572152 coding upstream 32491 46318156 ~ 46354342 (+)
LOC118966056 NA coding upstream 76058 46309012 ~ 46310775 (+)
LOC118966055 NA coding upstream 82086 46301264 ~ 46304747 (+)
LOC110532217 LOC106572155 coding upstream 108928 46263207 ~ 46277905 (+)
LOC110532224 LOC106572149 coding downstream 212676 46601814 ~ 46630668 (+)
LOC110532227 LOC106572146 coding downstream 250256 46639394 ~ 46642882 (+)
LOC110532228 LOC106572145 coding downstream 268849 46657987 ~ 46712041 (+)
LOC110532233 samd11 coding downstream 613004 47002142 ~ 47095401 (+)
LOC118966184 NA coding downstream 719213 47108351 ~ 47111306 (+)
G810017 alas2 non-coding upstream 70502 46305432 ~ 46316331 (+)
G810083 NA non-coding upstream 83669 46302964 ~ 46303164 (+)
G810076 NA non-coding upstream 91621 46294946 ~ 46295212 (+)
G810059 NA non-coding upstream 121931 46264410 ~ 46264902 (+)
G810057 NA non-coding upstream 124776 46261772 ~ 46262057 (+)
G810112 NA non-coding downstream 4019 46393157 ~ 46394599 (+)
G810243 NA non-coding downstream 178175 46567313 ~ 46567630 (+)
G810247 NA non-coding downstream 190563 46579701 ~ 46585007 (+)
G810265 NA non-coding downstream 217335 46606473 ~ 46617960 (+)
G810273 NA non-coding downstream 240340 46629478 ~ 46634021 (+)
G809685 NA other upstream 251101 46134731 ~ 46135732 (+)
G807841 NA other upstream 1933756 44442662 ~ 44453077 (+)
G807677 NA other upstream 2190792 44195715 ~ 44196041 (+)
G805600 NA other upstream 4038047 42346176 ~ 42348786 (+)
G805451 NA other upstream 4054395 42332093 ~ 42332438 (+)
G812143 NA other downstream 1592863 47982001 ~ 47982301 (+)
G812688 LOC106572106 other downstream 2156316 48545454 ~ 48570593 (+)
G813071 NA other downstream 2570611 48959749 ~ 48959991 (+)
G813074 etbr2 other downstream 2614181 48962187 ~ 49006710 (+)
G813139 NA other downstream 2725999 49115137 ~ 49115618 (+)

Expression

LOC110532221(LOC106572324) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
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LOC110532221(LOC106572324) Expression in each Bioproject

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LOC110532221(LOC106572324) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network