LOC110531189 (pigt)



Basic Information


Item Value
gene id LOC110531189
gene name pigt
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 46644716 ~ 46656973 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>LOC110531189
TGAAAAACACAGCTACATTAATTTATCCTATTCTGTTACATCAACATATGATATGTTAAATTTATCAAACAATGAATCCGATGTAAATATTGCTGGTAACAAAGCAAGTTTAGATCAGTCACTATGCGCATCTTTTGCGCAGTGATGATTGTCCATAATAGACTCAATTATTTAATCCTATTGGTCAACATGACACGCCGTTAAGGAAGTAGGCGCAGTCATTCAGCAGTCGGGAAAATGAAAGCGCACAGGTGCAATGTATATATGCTGGCGTTCGTTCTTTGTGGATTAGTATACGTGTTTGTTACAGCAGACGTACAAGAAACAAATCAGGTGAAAGATGCCGAGGGCCAAACCCATGCCGTGGAAGAGGAGAGGCAATGGGAGGCTACCGAGGTCGAAACGAATCTATCGTTAACAGATACTCCAAGCGACAACGAAGCTGACCATGTTCAAACCTGTGACAGACCTCCACCACCTCCCGCAAAAGACGAAATCCAAGAGGCCGCGGAAGAGGTGAGGCGGGACTCCCTCGAAACGAACATAGTAGATGTTCCAAGCGACAAAGTTGACCATGTCTCCGACACCAAGAAAACCCTAGACGACCCTCCACCACCGCCCGAAAAAGACCGGTTTCAGGAAGAGTTGGTGATCAGACCATTGCATTCTGGGGATACTTACGCCAGCTTCCAGTTCCGAACCTTGTGGGATACGGACTTCTTCCGAGGAAATAAAGTGTTATACTACCAACTCTTCCCGAAGTCTCTGGGCCAGGTGATTTCGAAGTTCTCTGTGAGTGAGCTCCACATCTCCTTCACTCAGGGCTACTGGAGGACCATGCAGTGGGGCCAGCCTTTCCTACCGTCGCCCCCTGGTGCCGAACTGTGGGAATGGTGTCAGGACACTGTAactgaTGTGGACATTGCCTGGAAGGAGCTGACCAACGTCCTCTCAGGGATCGTCTGTGCCTCGCTGAATTTCATTGACTCCACCAACACGGTGCAGCCCAGTGCCTCCTTCAAGCCTCTAGGCGTGGGCAATGTAACGGACCAGCGCTTTCTCCGCTAATGCTGTGTTGCCACGGGAGATCGTTTGTACTGAGAATCTGACGCCGTGGAAGAAACTCCTTCCCTGCGGCGCCAAGACTGGTCTGGCAGTCCTAATGAACTCTGAGAAAGTCTTCCACAGCAGCTTCTACTCCCAGGCTCTACACATCACACCTGTGTGTCAGGACTGGCAGTGCAAGTCCACAGCATGGGAGCTGAAACGGACACTGAACGTGGTGTTTGACCTGCACTCCTCTGGCCAGGGCAAACGAGAGTGGTCCCTGTTCAAGATGTTCTCTCGTACCCTGACTGAAGCCTGCCCCCTGCGACATTGTGCTACATCAGGAAtagattgttgttgtttttcccctTAAAAGGGGGAGCAGTTTGAATTGAGTCCAGCCACACCCCTGTTGAGCCAGGCTGTGGTGCTGGGGGATCGGAGAACCTACTCGGTCTATGACCTCACCAACCAGGCAACGTTCGGACAGATGCGCTCCCTCAACATGCTGCTGCGCTAGAGAGCAGCCGAGAGTGGAGATATGCTGCGCCCTCTACTTCACGGAGAGCGCTACGTGGCGGGCTACGGGCTGCCGACGGGGGAGATCCACACCCTGGTGTACAATCACCACACATACCGGGCCTTCCCTGTGCTCCTGCTGGACACCGTGCCCTGGTACCTGCGCCTCTACATTCACACGCTCACCACACCAGCAAGTGTCGTGACAACAAACCCAtttacatccactaccAGCCGTCCAAAGACCGCCTTCAGCCCCACCTGCTGGAGATGTTGGTCCAGCTGCCTCCTAACTCTGTGACCGAGGTCACCGTGCAGTTTGAGAGGGCACTCCTGAAGTGGACAGAGTACACCCCCGACCCCAACCACGGCTTCTACGTCGGGTATAACTTTGACTTTATAGAAGTCTACAGAAACAGAAGATATGCATTTCTCTATGCTACGGGTCAAAATTGTCTAAAGAAATGCCAATTGGTTATTATAATTCATTTCTGTCTACCCAGTTTCCCGTGTAAAGAGGAGTCCAGTTACTTCATGCGGGTCTACACGGAGCCTCTGCTGGTGAACCTGCCCACTCCTGATTTCAGCATGCCCTACAACGTCATCTGCCTCACCTGCACCGTGATGGCCGTGGGTTACGGCTCCCTCTACAACCTCCTGACCCACACCTTCCAGGTGGAGGAGCCCGGGCCTGGCCAAACGGCTAGCCAAAATCATCCGCAGGCTCAGGTGTGTGCCACTGCTGTGATGGGCCAGAATGCTATCATGCTAAAGCTAACAACATTATCAAGCACATTTTTGCGGTGGGGCAATGAGGTCAGTGATTACACCACTTGGGAAACGTGAAGGTAAGTTTCAGTGAGATGCTACTTTAAACATGGGAAGCTTCTGCAATAAAAAACTAAACTCTCAGTTCTGTTTTGTGGAGGACATGAGTCTTTATGAAGTGTCATGGATTCGATGGACGCTTAAGGCATTTTCTCACCATGAGGAGCAGAAAGGGTGGCGTTTCTTCAGTGCACTACTACTGCTGGTGTAGTTGAACAGAGAATAAGGGGGGGGGGAGTTGGCTGCCAGACGCGGCAGCAGATCACAGCAAGCTGTGATATATCTGTAACTGGAAAAAGTAATGAGCCATTGCTCTAGAAAGATCTGATGCACCTCTTCAATCTAAACAGGAATAATATTTGTACTTTAAGTTGATGTTGAAAAGTTAAGTGCACTGACTTACAGAACTTTCATAACCAGTTAGTTGGATTTCTGTAAACGTTTCGTTAATTGCTCACAGAACCAGTCAACATGGTTGTACTTGAAGAAAACCCAACCATCTCTACAAGAAACGGCCATTGATTTGACCAGATTTGTCTTAGCTTTGTCTGTGTTTCTTATTGACGTTTTTGTGTTCTAAAAATGGTGGAAACTTTGGTAAGCCTTTCTAGCACAGATACCCACCACTCAAATTTAAGAAGTTTGCCATGCATTGTTTAAGAACTGATTTACCAAGACAAATATATTTTACTTTTTAA
>TU922491
GAGTCCAGCCACACCCCTGTTGAGCCAGGCTGTGGTGCTGGGGGATCGGAGAACCTACTCGGTCTATGACCTCACCAACCAGGCAACGTTCGGACAGATGCGCTCCCTCAACATGCTGCTGCGCTAGAGAGCAGCCGAGAGTGGAGATATGCTGCGCCCTCTACTTCACGGAGAGCGCTACGTGGCGGGCTACGGGCTGCCGACGGGGGAGATCCACACCCTGGTGTACAATCACCACACATACCGGGCCTTCCCTGTGCTCCTGCTGGACACCGTGCCCTGGTACCTGCGCCTCTACATTCACACGCTCACCACACCAGCAAGTGTCGTGACAACAAACCCAtttacatccactaccAGCCGTCCAAAGACCGCCTTCAGCCCCACCTGCTGGAGATGTTGGTCCAGCTGCCTCCTAACTCTGTGACCGAGGTCACCGTGCAGTTTGAGAGGGCACTCCTGAAGTGGACAGAGTACACCCCCGACCCCAACCACGGCTTCTACGTCGGGTATAACTTTGACTTTATAGAAGTCTACAGAAACAGAAGATATGCATTTCTCTATGCTACGGGTCAAAATTGTCTAAAGAAATGCCAATTGTAATGGGAACTTGGACAGTTAATGTACTCTTTGTCGTAACTTTGAAGTGTTGTTTGCCTGTAATTGCTGTCATAGCGTTTAGATTTGTGCTTCagaactgggttcaaatacaatTAGGAATCTTTCAAATTCCATTAGCAATTTGCAGTTTTTCCGCTATTGGTTCCGTTGTCCcaagcaagctcaatcaagctcaATTAAGTTATTTAAAATATTTGTCTTGACTTTGATTCTGAATGAAGATGGGGCCTTGGCTAAAATTGAGATACCACTTGCTTGTAGTCTGCAGATATTCAAGTTTCCAGTAGCAGATATTTGATGAAATGTTGTCCCTCGCTTCAGGTCTTCTGTTATCAGCGCTCTCGTGcccagTGTTGTCGCCATGGATACCAACAGCACCCATGCTATCATGCTAAAGCTAACAACATTATCAAGCACATTTTTGCGGTGGGGCAATGAGGTCAGTGATTACACCACTTGGGAAACGTGAAGGTAAGTTTCAGTGAGATGCTACTTTAAACATGGGAAGCTTCTGCAATAAAAAACTAAACTCTCAGTTCTGTTTTGTGGAGGACATGAGTCTTTATGAAGTGTCATGGATTCGATGGACGCTTAAGGCATTTTCTCACCATGAGGAGCAGAAAGGGTGGCGTTTCTTCAGTGCACTACTACTGCTGGTGTAGTTGAACAGAGAATAAGGGGGGGGGGAGTTGGCTGCCAGACGCGGCAGCAGATCACAGCAAGCTGTGATATATCTGTAACTGGAAAAAGTAATGAGCCATTGCTCTAGAAAGATCTGATGCACCTCTTCAATCTAAACAGGAATAATATTTGTACTTTAAGTTGATGTTGAAAAGTTAAGTGCACTGACTTACAGAACTTTCATAACCAGTTAGTTGGATTTCTGTAAACGTTTCGTTAATTGCTCACAGAACCAGTCAACATGGTTGTACTTGAAGAAAACCCAACCATCTCTACAAGAAACGGCCATTGATTTGACCAGATTTGTCTTAGCTTTGTCTGTGTTTCTTATTGACGTTTTTGTGTTCTAAAAATGGTGGAAACTTTGGTAAGCCTTTCTAGCACAGATACCCACCACTCAAATTTAAGAAGTTTGCCATGCATTGTTTAAGAACTGATTTACCAAGACAAATATATTTTACTTTTTAAGACTGCTCATTTTTTTGTGTACTAAAActgctgttgattcttcacattTTACCAAACAGCATGAGAATGTTTGA

Function


symbol description
pigt Acts upstream of or within gastrulation. Predicted to be part of GPI-anchor transamidase complex. Human ortholog(s) of this gene implicated in multiple congenital anomalies-hypotonia-seizures syndrome 3 and paroxysmal nocturnal hemoglobinuria. Orthologous to human PIGT (phosphatidylinositol glycan anchor biosynthesis class T).

NR:

description
GPI transamidase component PIG-T

GO:

id name namespace
GO:0016255 attachment of GPI anchor to protein biological_process
GO:0042765 GPI-anchor transamidase complex cellular_component

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
LOC110531189 False 3092 mRNA 0.49 11 46644790 46656973
TU922491 True 1844 lncRNA 0.45 5 46644716 46648450

Neighbor


gene id symbol gene type direction distance location
LOC110532223 LOC100380856 coding downstream 119309 46393101 ~ 46525481 (-)
alas2 alas2 coding downstream 327265 46305459 ~ 46317525 (-)
LOC110532215 LOC106572154 coding downstream 380956 46256999 ~ 46263834 (-)
LOC110532213 emp3 coding downstream 438086 46202726 ~ 46206704 (-)
zmynd12 zmynd12 coding downstream 444540 46187156 ~ 46200250 (-)
LOC110532229 sycp2 coding upstream 62589 46719562 ~ 46781807 (-)
LOC110533016 sycp2 coding upstream 124835 46781808 ~ 46783939 (-)
prdm2a LOC106572143 coding upstream 144615 46801588 ~ 46819009 (-)
LOC110532231 LOC106572142 coding upstream 172711 46829684 ~ 46847702 (-)
LOC110532232 LOC106572141 coding upstream 199550 46856523 ~ 46956481 (-)
G810814 NA non-coding downstream 328 46643496 ~ 46644462 (-)
G810800 NA non-coding downstream 14123 46621241 ~ 46630667 (-)
G810788 NA non-coding downstream 36997 46604938 ~ 46607793 (-)
G810789 NA non-coding downstream 38124 46605132 ~ 46606666 (-)
G810762 NA non-coding downstream 72799 46571792 ~ 46571991 (-)
G810870 NA non-coding upstream 67559 46724532 ~ 46732999 (-)
G810845 NA non-coding upstream 140039 46797012 ~ 46801533 (-)
G810920 NA non-coding upstream 191057 46848030 ~ 46848256 (-)
G811025 NA non-coding upstream 342504 46999477 ~ 46999754 (-)
G810563 NA other downstream 389072 46253514 ~ 46256922 (-)
pdyn pdyn other downstream 1326024 45316564 ~ 45318766 (-)
G809071 LOC106572179 other downstream 1346940 45295856 ~ 45298740 (-)
G808375 NA other downstream 2007944 44634559 ~ 44636846 (-)
G811300 NA other upstream 521831 47178804 ~ 47181797 (-)
LOC110531190 clcn6 other upstream 1006092 47642136 ~ 47676649 (-)
LOC110532252 fkb1a other upstream 1621201 48278174 ~ 48286453 (-)
G812840 NA other upstream 1851672 48508645 ~ 48509094 (-)
G813357 LOC106578276 other upstream 2258462 48915435 ~ 48915704 (-)

Expression



Co-expression Network