LOC110532228 (LOC106572145)


Basic Information

Item Value
gene id LOC110532228
gene name LOC106572145
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 46657987 ~ 46712041 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615940.2
TTGCGAGCAAAACACTTTAAGCCATCCAACTGATATTTACCAcattcccacttggttatgaacgcaGGAATATAGATGGGCACATCCGTATCACCGCTCCCACGTCCACACGCGCTCCAACATACTAGGAATTTCTGCTCAGCACCCATGGCCCCCCATTAGATGCTCAAAGCCGCTGTTGTCATAACGAATTATATCTGCACTACTGCTGTTTACTTCTGAAGTTGCCTGCCTCTGGTAGGGTTTTCAATATTTTATTCAGAATTCCTGTGCTCTATCCCTATGGCTACATCCGATGGAAATGGAATAGACGGCTGTCTTTTGCAACGAGGCAAATCTCAAAGTGACCCAAACCTACTCACCGAATCCAGCATCGATCTAGTGCACAACACAGTGGAGGTGATGGACCAGCAGAGGGTTCTGCATAGTGGCTGCCTGGTATCGGGGGTGCACACCCCGCCCATCCGCCGCAACAGCAAGCTGGCGAGCCTGGGGCGCATCTTCAAACCCTGGAAGTGGAGGAAAAAGAAAAACGAGAAGCTGAAGCAGAGCTCCACAGATGTGGCATTGTCCAGTGGGTGTCTCTCTCCAGAGCCCGGTTCCCCCTTGCAGGGCCCCTCAGATGGGACATGCATGTTGGGGGGGTTTGGGGGGTCGCTCAATGCCACTCTCACAGTCAGCAGTGTGGAGTATTTGGGCCCCGAAGAGGAACTCCCCCCGCCAGTGGCTGAGCCTCCAGGGGACTGTGAGCCAGAGGGAAATAGCAGTCAaaatacagaggaagagggagaggaggaggcgcaGCCTGGTGCCGATGCTTCTGAGGaggtccaggagggaggagaaaagacGGAGAGGCAGGAAGAGGAAATACCTCGAGGAACCACACCACCTCCAGTAGCGGCCAAACCGGTGATGCCACAGATGAGCAGTGGCGATGaCCCATCCGCTGTGCCCTCACACTTGGTCAACTCTTTCCTGCCTAAAGAGCTGCCCAGGACTCCCGAGAGCCTGGCCCCCATGGTGGCCCTGCGAGGGCCTGTCTCCAACCCCTCAGGGTCTCCTCACCTCGCCAATATTATGCACCTTCCCATGCCCCCTAGCTGTATCATGGAGGAGCTACAACGAGCCTTTGCCTCAAAGGCGAACCGGCAGGAAAGTGTGCATGGGCCTGCTGAGCCGGGCTCAACCCCGTGGCGGCGCTCTGATGGGCGACTCTCTCGCTCCTCCAGCTCGGAGAATCCATCGATGGCGAGCGGCGGCGTTGTCGACTGGCTACACCAAGCAGAGAGGAAGGAGGCGGAAGAGAACAAGGAGAACATGCGGCTGGACCAGTGCTTCTCCGACGCCTCGGGCCTCCCCCATGATCAGGATGACTGGAACGACTCCGTCATCTCCGGTACACTACCTCGCAGGCTAAGGAAAGAGCTCTTGGCAGTGAAGCTTCGGAATCGACCCAGCAAAGAGGAGCTTGAAGACCGGAATATCTTCCCAGCGCGGACCGAACAGGAACGTCAGGAAATACGCCAGCAGATCGAGATGAAACTCACCAAGAGACTCAGCCAGAGACCAAATGTGGAAGAGTTGGAGAGTCGGAATATCCTAAAACAGAGAAATGACCAGACAGaacaagaagagaggagggagatcaAACAGCGGCTCAACAGAAAGCTCAATCAGCGGCCCACAGTTGACGAGCTACGGGACCGAAAGATTCTCATCCGTTTCAGTGACTATGTAGAGGTGGCCAAAGCTCAGGATTACGACCGAAGAGCAGACAAGCCCTGGACCAGGCTCTCTGCAGCCGATAAGGCGGCTATCCGAAAGGAGTTGAACGAATTCAAAAGCACCGAGATGGAGGTGCACGCCTCGAGCAAGCACCTCACAAGGTTCCACAGGCCGTGAATACGAAGGGGAGTTTCTTCTGTGAAGAAATAATGCTGAGCCTAGAATTTTCGGTTGCTGCGTCGGTGGCGGTTAGAAACTGCCGGAGCCCGGAGGACATTCTTCCAGAGCCCATTCCTTTGTCTGCAGGGTATCCTCAATTCCTCCAGCGCGCCCCTAGGTTTCGTCGAGGGGAGGTGGACAGACGGTGATGTTTGGGGGTGTGACAGTGAATCCCGGAGGCTGTGTCTCCAACGTGGGAGCTGACTGGAGGAAGAAGACTAAAGGCAGAACCTCGAACTCGGACTCCGTCTATCTGCCCGTCGGTTAAGATGGAGCTGAGGGAAGAACAATGCCTGTGTGTGCGGGTTTTTTCAAACTGACTCCTTTGAGAATGTGGTTGAATGCGTACAGGGAAGATGACGTTGTGCATGTGACCAGcttcacctttttttttttttttgaataacGTGTCACTtgagggggatggggggaggggggggggactgtggTCGGCCGTGGGTGAATTTCGTACCAACTGTATCTGTCAATCTGAACCGGACTGTCAATGTTTTCACTCAAGAGAGAACCTTTGTAAGCACTACTTGTCTTCAAAATACAAGGTCttcaaaaaaaa

Function

NR:

description
phosphatase and actin regulator 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615940.2 True 2521 mRNA 0.54 12 46657987 46712041

Neighbor

gene id symbol gene type direction distance location
LOC110532227 LOC106572146 coding upstream 15105 46639394 ~ 46642882 (+)
LOC110532224 LOC106572149 coding upstream 27319 46601814 ~ 46630668 (+)
LOC110532221 LOC106572324 coding upstream 268849 46386833 ~ 46389138 (+)
LOC110532220 LOC106572151 coding upstream 286512 46361013 ~ 46371475 (+)
LOC110532219 LOC106572152 coding upstream 303645 46318156 ~ 46354342 (+)
LOC110532233 samd11 coding downstream 290101 47002142 ~ 47095401 (+)
LOC118966184 NA coding downstream 396310 47108351 ~ 47111306 (+)
klhl17 LOC106572137 coding downstream 437905 47149946 ~ 47181808 (+)
LOC110532236 LOC106572136 coding downstream 479694 47191735 ~ 47219174 (+)
LOC110532242 kiaa2013 coding downstream 867301 47579342 ~ 47589218 (+)
G810178 NA non-coding upstream 13385 46643484 ~ 46644602 (+)
G810273 NA non-coding upstream 23966 46629478 ~ 46634021 (+)
G810265 NA non-coding upstream 40027 46606473 ~ 46617960 (+)
G810247 NA non-coding upstream 72980 46579701 ~ 46585007 (+)
G810243 NA non-coding upstream 90357 46567313 ~ 46567630 (+)
G810345 NA non-coding downstream 26485 46738526 ~ 46792059 (+)
G810485 NA non-coding downstream 254627 46966668 ~ 46967642 (+)
G811030 NA non-coding downstream 340515 47052556 ~ 47053128 (+)
G811071 NA non-coding downstream 348275 47060316 ~ 47063070 (+)
G811083 NA non-coding downstream 372353 47084394 ~ 47085555 (+)
G809685 NA other upstream 522255 46134731 ~ 46135732 (+)
G807841 NA other upstream 2204910 44442662 ~ 44453077 (+)
G807677 NA other upstream 2461946 44195715 ~ 44196041 (+)
G805600 NA other upstream 4309201 42346176 ~ 42348786 (+)
G805451 NA other upstream 4325549 42332093 ~ 42332438 (+)
G812143 NA other downstream 1269960 47982001 ~ 47982301 (+)
G812688 LOC106572106 other downstream 1833413 48545454 ~ 48570593 (+)
G813071 NA other downstream 2247708 48959749 ~ 48959991 (+)
G813074 etbr2 other downstream 2291278 48962187 ~ 49006710 (+)
G813139 NA other downstream 2403096 49115137 ~ 49115618 (+)

Expression


Co-expression Network