LOC110532229 (sycp2)


Basic Information

Item Value
gene id LOC110532229
gene name sycp2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 46719562 ~ 46781807 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615941.2
TGAGTGAGTATCTGTCTGTGTGCACATGGTGCAGTGGTTTGAGAAAGCAAGGCTGTTGTGGATCGAGGCATGCACACAGAGGAATGAGACCTTGCTGAACCTAGCTGAAGACTTATTTGACTCTGTAATGGTTGTTCATGAAACAAGTCTAGAGGGAACATATGAGGTCACTGAATGCTTTCTACATCTCATTGGCCAGCTGGCTGCAGACCCAAGAATCCACATAATGATCCAGAAAGAGGCTATTCGGAAACTGAACATCATTCTGGATAAGATCCCAGCGGAGCTCAAAAAGGAGAAGAAGATCTTATCATCTCAAGAGGCCTCGGATCTAATGAACAACCTGGCCAGTCGAATTGTAGAGGGTGGAGATTATGACCTGCAGATAGCCTTGATGGAAGCCCTGTGCAGGATGACCACCCGTGCCCAGAGGAAGGAGCTGGCTGACGATTGGTTCTCCATGGAGTTTGTTGCTAGCACCTTCAGCAAAATTCAGGACTCTGAGTTTGAGACGGACTGCCGCAGGTTTCTAAACCTTTTGAATGGGATGCAGGGAGATGGGAGAAGAGTGTTCTCCTACCCTTGTCTGGAGGTGTTTCTGGATAAACATGAGTTGCTGATGCCCGCTGATGAGAAACTGGAGGAGTTCTGGATCGACTTCAACCTGGGAAGTCAGAGCGTCTCCTTCTACTTCTCTCTCGCCGATGAGGATGCACAGGAGGGTCAGTGGGACACAGCCTGTATCCCTGAGAATGAAGTCCACAGTTACACGGTCACAGaggagggtaggaggagggTGCTGAAGTTAAAGCTGACAGAGCCGTTGTGTGTGAGTGGGGTGGAGGGCTCCCACCTCACCATCCACTTCAGCTCCTCCCTGGACATCATGCAGGCAGCCAGGAGCGTCTACGGAAACAAGAACAAATCGTTTGTGGGCAAGAGAAGAACCTCTGTCGTGAAGACCACAGTCAAGATTGTTATGGATGACAACTGCTCCCAGGCTCTTGTTCCCGAGAGTCAGATGTCCCCCGACGCtgacgtggagagagagagggacagtgtccCCTGTCTGCTACCCCCTCGCCCCTCTGGACCCTTACAGATGGTGACTCCAGCCAAGAGGAGGGTGTCTGAGTCCAGCACGTTCATCACCAGCagcggaggagggagggggacaggagcCAGCCCCTTTAGCGTTGTTATGGCAGCATCCACTCCCAGAGGCAGCAGGCCCAAAGTGAAGCCGGCTATAGAGCTGGTCAGGTCGTGTGAGAGGCAAGGCCAGTCGGGCCTGGGGGAGCTGAGGACGGCCAAACCCTACTACAATGCCGCCCCTGGCATTACACTGAGCCACAGCAGGAGGGAGCAGATGGATGCGGTGGTTGCTCTATCACAGAGCAAAGCTACCAAGCAGGACACCAAAGCTGGACCTGTGGCAGAGAAATACCGCAGGCACATCCCAGTGGACAAAGTGGTGGAGATGGTCCAAACTGACCAGGCAGAGGAAGAGGAGCTTCTTGACAGCAGCATTGTCCCTGACTCCCAGCCTACCATGAAAACAGAGAGTACTATATTCTCCCACTGGAGGAAAGTGTCTGTATCTGAGATGCTGCTGCCGGTACAGAGAGGCTTCCAGAAGGCACTGCCCAAACCAGAACTTGAGAACGTAGAGCAACAGGAGCGTCCGTCATCGGCCCAGAGAGGTTCTGGGTCGGTCCCTGGGTCAGCAGTCAGCCACAAGCAGCTCCACGCCCAGCTCACCCAGCGCCTGGAGGAGGTCCTCCGCAAGAGGGACCGGGGTACTGGGCCCGAGGAGCGAGCTGGAGTCCAGATCAGAGTGCCTGAGGAGCGAGGTAGGCCACAGGACCGAGGGTCCCGAGAGCGAGCTGGAGCCCAGGGAGGAAGCGGGCCTGAGGAGCAAAGTGGAGCCCAGGGAGGACGAGGGCCTGAGGAGCAAGATGGAGCCCAGGGAGGAAGAGGGCCTGAGGAGCGAGGTGAGCCCACTGGGAGAGGTGCCAAAGTGTCACGGCAGGATGCAGGAAGGCCTGGTCAGACCAAGGGGAAACCTAAGAGCCAGAAGTCTCAGGAAACTGAAGCCACCCCAGGGAAAGCCCCTGTCAAACCCACCCCAGCTAAAGATATACAGGAGAGGGCAACACCTAACTCCAAGGTTAAGGCCACTGGGTCAAACTCCAGTAAAGACAAGagagaggaggtggtGACGGGCACCATGATGAGGTTAATCTCCAGCCACTACGAGAATAGCACATCATCCACCACCATTAAATCCCCTGTAGAGTCTGTCCCTCGCTGGCCCCTTCCACCCACCAACAGGTACTGCAGCAACAGATCTGTTTTGGAGAAGAGTTGGTTGCCGCCATCGATGGTGGGAAGGGCAAAAGCACCGGGATATATGAAGTCCTACACTAACTCCAAGAAGCCCTCTGCAGAACAACAAGGAGATGACGTCTTTGCGTTCAAAGTGGATACATCTATGACCACTGggGGGGAGGGGAAAATGTCCTCGGACACCTCTGCCATTGATAGCAGTGCTACTCACAACTCCTGGGCATTCCCCAGCACTGCCAAGAAGGGCCAAGCAGTCAAGTCCCAGGTAGCAGCTCCGCGGCGCCACGTGAAGAAGCACCTGTTCAGCGACACAGACACAGACGCCATGATGGAGATCAGCTGGCTCAAAGAGTCCAGCAGGAAGCCCAAGCCCAAAGTGATCGACTACAGCCGTCAGCCCCGGCTCCACCCTCCTGCCCCCAACACCACATATGAGTCCCCAGACTTACCACCTAGCTCACCCAAGCCTGTGAAGGAGAAAGCCAAGCCAAAGAAGaagagacagagggtgaaggagagaagtGTAGAGCAGAAAGAGAACCGTGGAGCGGCACTGGTGGCGGCAGGGACCAGTCAAGCAGCCAGGAGGCCCCAGAGAGCCGCCGCCACCAATGCCAAGAGCTACAGGGAGCCCGACAGCGCCAGCCAATCAGAGACTGAAGAGCCGCCAGCTCCTAAGAAGCGCTCCATCGGACCAGCGGAAAAGATTGAGAAGGTTTGCCAAGAGGCTGTCGAGGTGAAGAAGAAAAAGGCAACCACCCCGGCCAAGGAACAGACGAATGTACCGAAAGAGTCTTCTTGGGCTGCCCGGCTGGCCTCTTTCAATCCTTCCCCGCCTGCCATCGAGAGGATGAGAGCTGCATCCGAGAGGTCGCTGATAGTCTTACCCCGGTCGCCCCTCACCCCGCAGGGCTCCCTGTCCGCCTCCCCTGCCAGCGGCCCCTCTTCACCCCTTGCCCTGGAGCTGCCCCCCGAACACCCTCGCAGCAGCGCGGGCTTCCAGCCCTCCTCCTTCTACAGCGCCCCTGGGAGGAAGAGTGACCGCAAAGCTAAggatccctctctcccatccctcccctctctcccatcccttacTCCCACTGGCAAGACTCCTGGCCTCCGCGCCCAGAGACCCAGTGCCTTAGAGCTGAGCCCAATCCAGCCTGCTCTCTCCCCAGCCCAgtctcccctcctctgccctccctcccagCTCCTCTTGACCTCCACGGCCCTCCAGAAGTCAGTGCtgccctcccctcttctccaatCACAGCCCTCTCCAGGAGAGACTGATCAATTCGCCCTCCATTTTGGCTCCCCAGGCCAGCTGGGCCTGCCCGAGTCCTTCGACAAGGAGTCACTTGTCTCCAGAGTGAAGTTGAGCCAGTCCTCGTCCAGGTCAGAGATGTCATCGACCCGAGTGGAGGTGGTCAACCCGGCAGCCCTGACAACCGCACTGGAGAAAACCCCATACTCTGAGCGAAGGCACAAGCTGGATCAACGCAGCTTTCACCTGTCAGGTCCCTGCACCGGGCGCAAGCGCCACAACTCCCGCCCCTCGTCCAGTAACtcggaggaggagggaaagagcgGCACACGAAGAGGGAGGCAGGCGGTCAAGATGAGGCCTAGGAAACTGTTTAAACCCACAGCCAAGCCCAACCTCCACGCTCAGGCCCAGGCATGGGAGGAACAGAGCAGCTCTGacgaagaggagaagaaaggaaatGGAACAAAGGACAGGGCCTCGCTGGCAACCACGAAAATATATCACCACATCCAGAGCAGCAAGAGCGCTCGTGACACAGTCATGGACGTTTCTCCGGAGGGGGACCTGAGCCGGGTGGTGTCGTCCCACATGGTGACGTCATCCAGCTGGGAGGCCGACGTGGAGGCCGAGGTGGAGGGTGAGCTGGGTCGCTCCCCTCACGACATGGGCAACATGTGTCGCCAGTTCAGCTCCGAGCTCCAGAGGAAATTCCAGAATCGCTCCAGACGTATGGAGCTGTACACCAAGCAGTCTCTGAAGACCGTCCAGCAGCACGTCTCTTCCATCAGCATGAGGGTTCAAAACTACAGgtctcaGAAGCTGGAACAGGTCAGGGGTGTTCTGCTGAAGGAGATCAACAACTTGGAGGAGGACGAATCCACTCTAAAGAACATGGAGAAGGAACTGACTACATACTGGAGGAAGCAGTCTGTGGCTTTCCATTCCTACCAGGAGAAAGAGactagaagACTGCAGAGCCTCAAGAGTACCTTCCAGACCGATGTGTGTCACAGCCTGGAGTACGAGGAGAGGATCTTCACCTCTCAGATGTGCCTGATGAGGAAAGACATGAAATCAGTTCAGGACAGACTCTTCAAGGAAATGCAAGACGAGGAGATAATGAGTGTGAGGAGAGGACTACAGGCTCTTTTCCTGCCAGAGGGACCAAGATTTTAAACCCAAATCAAGTACCTCTGCACATTTATAAGATATGTTTGTGTTCTGTGAAGTTTGCCCGTCATTCTACGTTAGCTGTAATCAAATTTAATATATTAAGCATAAGttaaagaaatatatatacatgCCTTATTTAAAAAATTATCAAATGtgaatttatatttaaaaaaaaatatcagatcatttttgtatttttgcaGTGATGTTTGACACTAATAACTTTTTATAGTTTTAACTGTCTCTCCATAAGAGTAGTATTTTCAATATAAATAATGCATTTCTGTGAACATTGTTTGAATGGCATTTTATCTGTACAAGGTTGCCTGCTATTTGTTTGCTGTTAAGGTTGCCTAAGTTTATTAAACtttttaaaacaaaaa
>TU922550
ccctgtctgtgtgtgtgtaggtctcaGAAGCTGGAACAGGTCAGGGGTGTTCTGCTGAAGGAGATCAACAACTTGGAGGAGGACGAATCCACTCTAAAGAACATGGAGAAGGAACTGACTACATACTGGAGGAAGCAGTCTGTGGCTTTCCATTCCTACCAGGAGAAAGAGactagaagACTGCAGAGCCTCAAGAGTACCTTCCAGACCGATGTGTGTCACAGCCTGGAGTACGAGGAGAGGATCTTCACCTCTCAGGTGTGGATCATCCAAACTTTAGCGCTAGACTTCATCTACACTGTAGCCTCCCGCTTCATATAAACTGTAGCCCACTATGTTGATCATAAACACAACAATTCCATACAGCACA

Function

symbol description
sycp2 Predicted to be involved in meiotic nuclear division. Predicted to be active in lateral element. Human ortholog(s) of this gene implicated in spermatogenic failure 1. Orthologous to human SYCP2 (synaptonemal complex protein 2).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615941.2 False 5175 mRNA 0.54 42 46719562 46781807
TU922550 True 370 lncRNA 0.48 3 46721247 46727052

Neighbor

gene id symbol gene type direction distance location
LOC110531189 pigt coding downstream 62589 46644716 ~ 46656973 (-)
LOC110532223 LOC100380856 coding downstream 194081 46393101 ~ 46525481 (-)
alas2 alas2 coding downstream 402037 46305459 ~ 46317525 (-)
LOC110532215 LOC106572154 coding downstream 455728 46256999 ~ 46263834 (-)
LOC110532213 emp3 coding downstream 512858 46202726 ~ 46206704 (-)
LOC110533016 sycp2 coding upstream 1 46781808 ~ 46783939 (-)
prdm2a LOC106572143 coding upstream 19781 46801588 ~ 46819009 (-)
LOC110532231 LOC106572142 coding upstream 47877 46829684 ~ 46847702 (-)
LOC110532232 LOC106572141 coding upstream 74716 46856523 ~ 46956481 (-)
trnaa-ugc-35 NA coding upstream 140388 46922195 ~ 46922265 (-)
G810814 NA non-coding downstream 75100 46643496 ~ 46644462 (-)
G810800 NA non-coding downstream 88895 46621241 ~ 46630667 (-)
G810788 NA non-coding downstream 111769 46604938 ~ 46607793 (-)
G810789 NA non-coding downstream 112896 46605132 ~ 46606666 (-)
G810845 NA non-coding upstream 15205 46797012 ~ 46801533 (-)
G810920 NA non-coding upstream 66223 46848030 ~ 46848256 (-)
G811025 NA non-coding upstream 217670 46999477 ~ 46999754 (-)
G811197 NA non-coding upstream 220288 47002095 ~ 47002359 (-)
G811233 NA non-coding upstream 278458 47060265 ~ 47061192 (-)
G810563 NA other downstream 463844 46253514 ~ 46256922 (-)
zmynd12 zmynd12 other downstream 528570 46187156 ~ 46200250 (-)
pdyn pdyn other downstream 1400796 45316564 ~ 45318766 (-)
G809071 LOC106572179 other downstream 1421712 45295856 ~ 45298740 (-)
G808375 NA other downstream 2082716 44634559 ~ 44636846 (-)
G811300 NA other upstream 396997 47178804 ~ 47181797 (-)
LOC110531190 clcn6 other upstream 881258 47642136 ~ 47676649 (-)
LOC110532252 fkb1a other upstream 1496367 48278174 ~ 48286453 (-)
G812840 NA other upstream 1726838 48508645 ~ 48509094 (-)
G813357 LOC106578276 other upstream 2133628 48915435 ~ 48915704 (-)

Expression


Co-expression Network