XLOC_026717 (h3f3b.1)


Basic Information

Item Value
gene id XLOC_026717
gene name h3f3b.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 45776370 ~ 45778123 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052020
aaatacaagaTCCGCCGAGTAGAAGATCGTGGTACAAAGAGGTTTGTAAATTGAAAAACAATGGCCCGTACTAAGCAGACCGCGCGTAAATCCACTGGAGGAAAGGCGCCAAGAAAACAGCTGGCAACTAAAGCCGCCAGGAAAAGCGCGCCCTCTACTGGAGGAGTGAAGAAGCCTCACAGATACAGGCCCGGAACTGTTGCTCTGAGAGAAATTCGTCGTTATCAGAAGTCAACAGAGTTGCTCATCCGCAAGTTGCCGTTTCAGCGTCTGGTCAGAGAAATCGCACAGGATTTCAAAACTGACCTGAGGTTCCAGAGTGCTGCTATTGGCGCTCTTCAGGAAGCAAGTGAGGCCTACCTTGTCGGTCTATTTGAGGACACCAACTTGTGCGCCATTCATGCCAAGAGAGTAACAATCATGCCCAAGGATATCCAGCTTGCAAGGCGAATCAGAGGAGAGAGGgcttaatttttactttttttatttcaacttttAAAGAGAAACACTCATAAGTAAAAGCAATGGATTTGTACATTGGAGTCATTTTGTAAAGCATTCCTTACAGACTCAGGTTTTTAAAGTGAGTGTGTCTAGATTTACATTTGTAGTGCTCATTGTAAGGCAGCTTTAGTTGCATGCTTAGTATTTATCtcttcctttttcttttctttttccatcGATCATTGGGTTGTAAATAAAATTTACTCTACCTCAAATCAA
>TCONS_00052021
AAATTGAAAAACAATGGCCCGTACTAAGCAGACCGCGCGTAAATCCACTGGAGGAAAGGCGCCAAGAAAACAGCTGGCAACTAAAGCCGCCAGGAAAAGCGCGCCCTCTACTGGAGGAGTGAAGAAGCCTCACAGATACAGGCCCGGAACTGTTGCTCTGAGAGAAATTCGTCGTTATCAGAAGTCAACAGAGTTGCTCATCCGCAAGTTGCCGTTTCAGCGTCTGGTCAGAGAAATCGCACAGGATTTCAAAACTGACCTGAGGTTCCAGAGTGCTGCTATTGGCGCTCTTCAGGAAGCAAGTGAGGCCTACCTTGTCGGTCTATTTGAGGACACCAACTTGTGCGCCATTCATGCCAAGAGAGTAACAATCATGCCCAAGGATATCCAGCTTGCAAGGCGAATCAGAGGAGAGAGGgcttaatttttactttttttatttcaacttttAAAGAGAAACACTCATAAGTAAAAGCAATGGATTTGTACATTGGAGTCATTTTGTAAAGCATTCCTTACAGACTCAGGTTTTTAAAGTGAGTGTGTCTAGATTTACATTTGTAGTGCTCATTGTAAGGCAGCTTTAGTTGCATGCTTAGTATTTATCtcttcctttttcttttctttttccatcGATCATTGGGTTGTAAATAAAATTTACTCTACCTC
>TCONS_00052022
CCGAGTAGAAGATCGTGGTACAAAGAGGTTTGTAAATTGAAAAACAATGGCCCGTACTAAGCAGACCGCGCGTAAATCCACTGGAGGAAAGGCGCCAAGAAAACAGCTGGCAACTAAAGCCGCCAGGAAAAGCGCGCCCTCTACTGGAGGAGTGAAGAAGCCTCACAGATACAGGTGAGCGAATGAGACGCGCTGAGTGACATTAACAGACACAAAGATGTCTATCTTCTGTTTTACAcgtttaaatttttacatttcagGCCCGGAACTGTTGCTCTGAGAGAAATTCGTCGTTATCAGAAGTCAACAGAGTTGCTCATCCGCAAGTTGCCGTTTCAGCGTCTGGTCAGAGAAATCGCACAGGATTTCAAAACTGACCTGAGGTTCCAGAGTGCTGCTATTGGCGCTCTTCAGGAAGCAAGTGAGGCCTACCTTGTCGGTCTATTTGAGGACACCAACTTGTGCGCCATTCATGCCAAGAGAGTAACAATCATGCCCAAGGATATCCAGCTTGCAAGGCGAATCAGAGGAGAGAGGgcttaatttttactttttttatttcaacttttAAAGAGAAACACTCATAAGTAAAAGCAATGGATTTGTACATTGGAGTCATTTTGTAAAGCATTCCTTACAGACTCAGGTTTTTAAAGTGAGTGTGTCTAGATTTACATTTGTAGTGCTCATTGTAAGGCAGCTTTAGTTGCATGCTTAGTATTTATCtcttcctttttcttttctttttccatcGATCATTGGGTTGTAAATAAAATTTACTCTAC

Function

symbol description
h3f3b.1 Predicted to enable DNA binding activity and protein heterodimerization activity. Predicted to be located in chromosome and nucleus. Predicted to be part of nucleosome.

GO:

id name namespace
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-65 Predicted to enable DNA binding activity and protein heterodimerization activity. Predicted to be located in chromosome and nucleus. Predicted to be part of nucleosome.

Ensembl:

ensembl_id ENSDARG00000020504

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052020 False 723 mRNA 0.43 4 45776370 45778123
TCONS_00052021 False 669 mRNA 0.43 3 45776377 45777226
TCONS_00052022 True 785 lncRNA 0.43 3 45776380 45778109

Neighbor

gene id symbol gene type direction distance location
XLOC_026716 NA coding downstream 232919 45539786 ~ 45543451 (-)
XLOC_026715 il21r.1 coding downstream 414797 45343782 ~ 45361573 (-)
XLOC_026714 il21r.2 coding downstream 449473 45315477 ~ 45326897 (-)
XLOC_026713 pdpk1a coding downstream 467976 45283391 ~ 45308394 (-)
XLOC_026712 kctd5a coding downstream 495020 45261387 ~ 45281350 (-)
XLOC_026718 si:ch211-66h3.4 coding upstream 40503 45818626 ~ 45822914 (-)
XLOC_026719 NA coding upstream 53954 45832077 ~ 45843700 (-)
XLOC_026720 igfals coding upstream 66884 45845007 ~ 45848257 (-)
XLOC_026721 shisa9b coding upstream 265283 46043406 ~ 46115232 (-)
XLOC_026722 NA coding upstream 375004 46153127 ~ 46217473 (-)
XLOC_026709 NA non-coding downstream 1440517 44332747 ~ 44335853 (-)
XLOC_026708 NA non-coding downstream 1652000 44111545 ~ 44124370 (-)
XLOC_026703 BX682557.1 non-coding downstream 1886927 43878456 ~ 43889443 (-)
XLOC_026702 BX682557.2 non-coding downstream 1901241 43866785 ~ 43875129 (-)
XLOC_026723 CR450782.1 non-coding upstream 446466 46224589 ~ 46227010 (-)
XLOC_026726 NA non-coding upstream 684462 46462585 ~ 46463256 (-)
XLOC_026727 CR385086.1 non-coding upstream 979488 46757611 ~ 46762706 (-)

Expression


Co-expression Network