LOC110532236 (LOC106572136)


Basic Information

Item Value
gene id LOC110532236
gene name LOC106572136
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 47191735 ~ 47219174 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615957.2
GCCTGACTTCAGTAAGCACACTGCCTCCACACCGTCTGCTTTGGGTTACACAGTCACCATCACAGAGGAACATAATACAGGACATCTATAGAGGAGCGGACAGCCCCGACAACAGTAGAGCAGCATGGGGAGCAGCATGTCATGTGTTCCCCAACACAACTTCAGGTTCTCCAGCAAGAGTTTCATACGCAGGAACAGCAGCCGCTTGTTCCGTAAGAGGTATCCCCAGGAAGGACAGGAGAAGTCCAACAGCATCATCAATATTCTCTGCACTGTCACTCCGAGGAAGGAGATGACCCATAAGGATCTGCAGAAGATCGAGAACATTAAGTGGGAGCCTCCGTTCCCTTACGACCCAGCCAGTGGCTGGAAGAAAAGCAGCATCAATGTCAAAAATTATGGCAGGATGGTCCACAGCTCTAAAGTCCACTTCCGCTTTCTCCACTGCCAGGATGTGCATGATTGCTACCTGGACCTCTTCCAGACACACCTTCATTTTGTCTCCAACAACACCACTGGACTCACCTACCAGGGGACTCTTCCTCTGAAAGAGCTCACCATCTGCAACCTGCAGCAGAACTGTAACCACAGCCAACTCCAGGAATTTGCCTTCCAGATCAACGGTGTCAGCCTGAACCCCATCATCGTCTATTGCTCCAACCAGGAGGAGATGGACATGTGGTTCGGCCTGCTCAAAGAACACATCGAGATCAACGGGGGCACCCCCATCGCACCTATCGAGACCTACACCAGGGTTAAGAATGTAAAGGAGAAcacggaggggagagaggagctgaggaACTCAATCAGTAAAGACCCCATCTATGAGTGGGAGGGTTCTCAGCGTGAGAGTCTGGGGCCCATCACTTTCGTGACCAAAGTCAGTCTGCAGCACCTCCCCTGCCAGGAGCAGAGTGACAGACTACTGGTGATGTACCCAGCCACTCTGATCATCCTATCAGAAGAGAGCCACGGACTTTTCTACAAGGGGAAACTTCCACTTAACATGGTCACTGTGACCACACCCTGCCAGGACGTCAAGCCCAACACCTTCATGATTGAAGGCAAGATGATAAACCCTATTGTGGTGTCCTGTTTGGATAAGAGGGAGTTCTATGACTGGATCCAGCACTTCAAAGCCTTCGATGTCCCTGTGGTCAGCCCCCCACCTCCTGTTTATGACATCATCTACACCCCCACAGCGAAAAAGGCTCCAGAGGTTGATAGGTGGAGTTGGAACAGCCGGAGCCAGAGCCGGAGTGAGTCTCTGAGGCTGGGGCAGTCTGCTGGGAGTGAGTCTCTGAGGCTGGGGCAGTCTGCTGGGAGTGAGTCTCTGAGGCTGGGGCAGTCTGCTGGGAGTGAGTCTCTGAGGCTGGGGCAGTCTGCTGGGAGTGAGTCTCTGAGGTTGGGGCAGTCCGCTGGGAGTGATTCTCTGAGGCTGGGGAAGTCCCACAGTGGACGGGGGTCTGGTTCCGGGTCCCAGCACCTCCAGTTCCCCCCTAGACACGCGGACAACCCTCTGTCCCCAGGCTACACAGAACCCCTATGTTACATCTCCAGTCGGCCCTGCTCTACTGAGACAGCTCGGCTGGGCAGCCGCAGTAACAGCGTTTCGTCCCACGCCGCCAGGTCCGAGCGTGACCCCCGACCTTTGTCACAGCGCTGCTCCTACCTCCCCCATGAGGGGCCGGTGGTGCTGTCCCCGGTGTACAACACCCCCTACTCAGGCCTGCACCGTGACCGCGCCAGTACCCCGCAATGCCTGGAGAAAGCCACCCTTGTCAAGTCCAACAGCTGGAGCACCCCTCAGACGTCCCCGAAGTACGCATCGCTCTCCACCCCTCAGCGCCACTCAGACATGTGTGCCCCCCGGCAGCCCCTGTCGCCCCTGTACGATGAGCCCTGCACCCCTGACACCTACGCCCAGGAGGAGAGCTGGCCCAGGCAGCAGCCAACGCAACAAAGTTGGCGAGGACCACCACAGAAGCAGCAGGACCCTCATCTCCTACCCTCCTCCTTCCAGCTGTGCACCCCTCCCCTGGGCAAGCGTTGCAGGAGGAGCCTGGTGCTCTGCCAAGGCCAGGGGCTGGAGATGGAGGGCCCTCGGGGGCCAGCAGACCAGAGAACTGAAGCTGTCCCCAGACTAAGGCTGCTGCCTGCACCCAAAGCAGTGCAAGAGCAGCGGCTCTTCCCATCGATGGCTGCTATGAACACCCCCCAGATGCCGTATGGTTACTCACCAGATCACAACTCATACCTTGAACCATCCGAGCCAGATGACCAGGAAATGGACTATGACAACATTTGGGAGTACGACTGCAATACCGAGAGAATTCAACCCATGTCTGGAATTTGGCCACACCGGACGGGATTAGACATTGGGGCCAGAGGCCTTGGTGCCATGGCAAACAACCAGCAGAGATGGTTATAAAAACAATGGGCCGACACTCGTCTGGACGTGCGCAAACAACAGATCCCTATCAGAGAGCCATTCAGTAACCCAAGCTCACTACTGCATATCATGgttgtgccccaaatggcaccctattcccgacatAGTGTGCTCTGTTTCAAGGTAgcccactatatagggaatagggtgtgaatAATGTATTTGTTAGTTGGTCAAAAGAATGCTTTAAGTGGCCATGAGATAAGAGGAACTTCTTAGTATTAATGCTGCactactgtgtactgtatgtaaatgcaGATAAACATGATTCAGCAAAAACACTTTCCCACACAACAGCATAAAAAGGTAGGAAACTGAGCCTACCTCTTAACGTAGCATTGATGAAAGTGCAAAATGTACATAGTTTCTATCCCTGAGTGCTTgaacatgttattttttttaccactGTCATTACACTGCATTTGGCTTCATTTGAATTgagtttttttgtattatttatggGCATTTTCTTTTAACACCGTCCTGTTTAAATGGTTTTATTTTGTGTAAACGTTTTGATTCATATGttatatcattattatcattttttGCATCATAGACAACGTGTCTTTGGTTGTAAGCTGTAAAAAGCATTCCAGCAAGCTTAATAATAGCAACACATCAGTATAATTTATTTAATGTTCCGAAATAACAAGGCAAACATTGATGGCTTGAATGGACTTTCTCCATTGTGTTACTGCTTCAAAATGTTGCTTGTCTTTGTGGCTTGTTTCTCATACTTTTAGGTGTTTATTTAAGTTTTTAATATAAACTAGTATTGATATTATTT
>XM_036988179.1
GCCTGACTTCAGTAAGCACACTGCCTCCACACCGTCTGCTTTGGGTTACACAGTCACCATCACAGAGGAACATAATACAGGACATCTATAGAGGAGCGGACAGCCCCGACAACAGTAGAGCAGCATGGGGAGCAGCATGTCATGTGTTCCCCAACACAACTTCAGGTTCTCCAGCAAGAGTTTCATACGCAGGAACAGCAGCCGCTTGTTCCGTAAGAGGTATCCCCAGGAAGGACAGGAGAAGTCCAACAGCATCATCAATATTCTCTGCACTGTCACTCCGAGGAAGGAGATGACCCATAAGGATCTGCAGAAGATCGAGAACATTAAGTGGGAGCCTCCGTTCCCTTACGACCCAGCCAGTGGCTGGAAGAAAAGCAGCATCAATGTCAAAAATTATGGCAGGATGGTCCACAGCTCTAAAGTCCACTTCCGCTTTCTCCACTGCCAGGATGTGCATGATTGCTACCTGGACCTCTTCCAGACACACCTTCATTTTGTCTCCAACAACACCACTGGACTCACCTACCAGGGGACTCTTCCTCTGAAAGAGCTCACCATCTGCAACCTGCAGCAGAACTGTAACCACAGCCAACTCCAGGAATTTGCCTTCCAGATCAACGGTGTCAGCCTGAACCCCATCATCGTCTATTGCTCCAACCAGGAGGAGATGGACATGTGGTTCGGCCTGCTCAAAGAACACATCGAGATCAACGGGGGCACCCCCATCGCACCTATCGAGACCTACACCAGGGTTAAGAATGTAAAGGAGAAcacggaggggagagaggagctgaggaACTCAATCAGTAAAGACCCCATCTATGAGTGGGAGGGTTCTCAGCGTGAGAGTCTGGGGCCCATCACTTTCGTGACCAAAGTCAGTCTGCAGCACCTCCCCTGCCAGGAGCAGAGTGACAGACTACTGGTGATGTACCCAGCCACTCTGATCATCCTATCAGAAGAGAGCCACGGACTTTTCTACAAGGGGAAACTTCCACTTAACATGGTCACTGTGACCACACCCTGCCAGGACGTCAAGCCCAACACCTTCATGATTGAAGGCAAGATGATAAACCCTATTGTGGTGTCCTGTTTGGATAAGAGGGAGTTCTATGACTGGATCCAGCACTTCAAAGCCTTCGATGTCCCTGTGGTCAGCCCCCCACCTCCTGTTTATGACATCATCTACACCCCCACAGCGAAAAAGGCTCCAGAGGTTGATAGGTGGAGTTGGAACAGCCGGAGCCAGAGCCGGAGTGAGTCTCTGAGGCTGGGGCAGTCTGCTGGGAGTGAGTCTCTGAGGCTGGGGCAGTCTGCTGGGAGTGAGTCTCTGAGGCTGGGGCAGTCTGCTGGGAGTGAGTCTCTGAGGTTGGGGCAGTCCGCTGGGAGTGATTCTCTGAGGCTGGGGAAGTCCCACAGTGGACGGGGGTCTGGTTCCGGGTCCCAGCACCTCCAGTTCCCCCCTAGACACGCGGACAACCCTCTGTCCCCAGGCTACACAGAACCCCTATGTTACATCTCCAGTCGGCCCTGCTCTACTGAGACAGCTCGGCTGGGCAGCCGCAGTAACAGCGTTTCGTCCCACGCCGCCAGGTCCGAGCGTGACCCCCGACCTTTGTCACAGCGCTGCTCCTACCTCCCCCATGAGGGGCCGGTGGTGCTGTCCCCGGTGTACAACACCCCCTACTCAGGCCTGCACCGTGACCGCGCCAGTACCCCGCAATGCCTGGAGAAAGCCACCCTTGTCAAGTCCAACAGCTGGAGCACCCCTCAGACGTCCCCGAAGTACGCATCGCTCTCCACCCCTCAGCGCCACTCAGACATGTGTGCCCCCCGGCAGCCCCTGTCGCCCCTGTACGATGAGCCCTGCACCCCTGACACCTACGCCCAGGAGGAGAGCTGGCCCAGGCAGCAGCCAACGCAACAAAGTTGGCGAGGACCACCACAGAAGCAGCAGGACCCTCATCTCCTACCCTCCTCCTTCCAGCTGTGCACCCCTCCCCTGGGCAAGCGTTGCAGGAGGAGCCTGGTGCTCTGCCAAGGCCAGGGGCTGGAGATGGAGGGCCCTCGGGGGCCAGCAGACCAGAGAACTGAAGCTGTCCCCAGACTAAGGCTGCTGCCTGCACCCAAAGCAGTGCAAGAGCAGCGGCTCTTCCCATCGATGGCTGCTATGAACACCCCCCAGATGCCGTATGGTTACTCACCAGATCACAACTCATACCTTGAACCATCCGAGCCAGATGACCAGGAAATGGACTATGACAACATTTGGGAGTACGACTGCAATACCGAGAGAATTCAACCCATGTCTGGAATTTGGCCACACCGGACGGGATTAGACATTGGGGCCAGAGGCCTTGGTGCCATGGCAAACAACCAGCAGAGATGGTTATAAAAACAATGGGCCGACACTCGTCTGGACGTGCGCAAACAACAGATCCCTATCAGAGAGCCATTCAGTAACCCAAGCTCACTACTGCATATCATGgttgtgccccaaatggcaccctattcccgacatAGTGTGCTCTGTTTCAAGGTAgcccactatatagggaatagggtgtgaatAATGTATTTGTTAGTTGGTCAAAAGAATGCTTTAAGTGGCCATGAGATAAGAGGAACTTCTTAGTATTAATGCTGCactactgtgtactgtatgtaaatgcaGATAAACATGATTCAGCAAAAACACTTTCCCACACAACAGCATAAAAAGGTAGGAAACTGAGCCTACCTCTTAACGTAGCATTGATGAAAGTGCAAAATGTACATAGTTTCTATCCCTGAGTGCTTgaacatgttattttttttaccactGTCATTACACTGCATTTGGCTTCATTTGAATTgagtttttttgtattatttatggGCATTTTCTTTTAACACCGTCCTGTTTAAATGGTTTTATTTTGTGTAAACGTTTTGATTCATATGttatatcattattatcattttttGCATCATAGACAACGTGTCTTTGGTTGTAAGCTGTAAAAAGCATTCCAGCAAGCTTAATAATAGCAACACATCAGTATAATTTATTTAATGTTCCGAAATAACAAGGCAAACATTGATGGCTTGAATGGACTTTCTCCATTGTGTTACTGCTTCAAAATGTTGCTTGTCTTTGTGGCTTGTTTCTCATACTTTTAGGTGTTTATTTAAGTTTTTAATATAAACTAGTATTGATATTATTT

Function

NR:

description
pleckstrin homology domain-containing family N member 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615957.2 False 3242 mRNA 0.51 16 47191735 47219174
XM_036988179.1 True 3209 mRNA 0.51 17 47191735 47219174
Loading

Neighbor

gene id symbol gene type direction distance location
klhl17 LOC106572137 coding upstream 9927 47149946 ~ 47181808 (+)
LOC118966184 NA coding upstream 80429 47108351 ~ 47111306 (+)
LOC110532233 samd11 coding upstream 96334 47002142 ~ 47095401 (+)
LOC110532228 LOC106572145 coding upstream 479694 46657987 ~ 46712041 (+)
LOC110532227 LOC106572146 coding upstream 548853 46639394 ~ 46642882 (+)
LOC110532242 kiaa2013 coding downstream 360168 47579342 ~ 47589218 (+)
LOC110533017 LOC106572130 coding downstream 407158 47626332 ~ 47627942 (+)
LOC110533018 LOC106572129 coding downstream 416196 47635370 ~ 47636413 (+)
LOC110532243 mthfr coding downstream 460366 47679540 ~ 47694148 (+)
LOC110532248 LOC106572122 coding downstream 767165 47986339 ~ 48023190 (+)
G811108 NA non-coding upstream 45322 47145796 ~ 47146413 (+)
G811067 NA non-coding upstream 75785 47114170 ~ 47115950 (+)
G811090 NA non-coding upstream 91387 47100114 ~ 47100348 (+)
G811029 NA non-coding upstream 93006 47098450 ~ 47098729 (+)
G811083 NA non-coding upstream 106180 47084394 ~ 47085555 (+)
G811161 NA non-coding downstream 32636 47251810 ~ 47252040 (+)
G811164 NA non-coding downstream 37649 47256823 ~ 47257061 (+)
G811168 NA non-coding downstream 41911 47261085 ~ 47261350 (+)
G811173 NA non-coding downstream 51951 47271125 ~ 47271346 (+)
G811382 NA non-coding downstream 94975 47314149 ~ 47314379 (+)
G809685 NA other upstream 1056003 46134731 ~ 46135732 (+)
G807841 NA other upstream 2738658 44442662 ~ 44453077 (+)
G807677 NA other upstream 2995694 44195715 ~ 44196041 (+)
G805600 NA other upstream 4842949 42346176 ~ 42348786 (+)
G805451 NA other upstream 4859297 42332093 ~ 42332438 (+)
G812143 NA other downstream 762827 47982001 ~ 47982301 (+)
G812688 LOC106572106 other downstream 1326280 48545454 ~ 48570593 (+)
G813071 NA other downstream 1740575 48959749 ~ 48959991 (+)
G813074 etbr2 other downstream 1784145 48962187 ~ 49006710 (+)
G813139 NA other downstream 1895963 49115137 ~ 49115618 (+)

Expression

LOC110532236(LOC106572136) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
End of interactive chart.

LOC110532236(LOC106572136) Expression in each Bioproject

Bar chart with 20 bars.
LOC110532236(LOC106572136) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.

Co-expression Network