LOC110531190 (clcn6)


Basic Information

Item Value
gene id LOC110531190
gene name clcn6
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 47642136 ~ 47676649 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110531190
TAGCCAGTAGCTGCAGGCTTGGGAATCCCCGAGATCAAGAGCTACCTGAACGGAGTAAAGATACCCGGAATAGTCCAACTACGTACTTTCCTCTGCAAGGCCGTCAGAGTCCTCTTCACCGTAGTCTGAGGTCTGTTTGTGGGGAAGGAGGGTCCAATGATCCACAGCGGAGCCATCGCGGGAGCCGGCCTACCTCAGTTTCAGAGCATCACTTTCAAGAAGATCAACTTGGACTTCCCCTACTTCCGCAGTGACCGGGACAAGCGGGACTTTGTGTCGGTAGGGGCTGCGGCCGGGGTGGCTGCTGCGTTTGGGGCACCTATAGGGGGCACCCTCTTCAGCCTGGAGGAAGGCTCCTCTTTCTGGAACTAGGCACTCTCTTGAAAAGTGCTCTTCTGCTCCATGTCGACTACATTAACCCTTAACTTCTTTCGCTATGCGATAAACTACGACAAATGGGGTTCGTTCCAGCTACCCGGCCTGCTCAGCTTTGGGAGAGTTCAAGggacctcaACAACTGCCTCCAACGAAGCAttgttacctatcgctccacaaaagcagcgGCCCTTGccgagcaagggaaacaactacttcaagtGTTCAGATGGGGATAAGAAGTGCCACCTGTGGACTGTGGTTGACCTGGCCTTCTTTATCCTGATGGGGGTGGTGGGAGGGCTGCTAGGGGCCTTCTTCAATTACATCAACAAGAGGCTGGACAAGTACCGCATGTGACATGTCCACCCCAAGGCCAAGTTTGTCAGGGTCCTGGAGAGCCTGCTGGTCGCCATGGTGACGACGGTGGGGATATTCGTGGCGTCCATAACGTTGGCGAATGTCGCGACTTGGCCTCCCCCACAACCAACAACAGTACAGCGCCGGTACGTTTGttattCTGTCCCAACAAGACGTACAACGACATGGCCACTCTGTTCTTCAACTCTCAGGAGGTGGCCATCCACCAACATTTCCACCAGGACGgtaCTTTCAGCCCCGCTGAACACGCTGACAGTGTTCTTTGTGCTGTGCTTCCTCTTAGCGTGCTGGACGTATGGTGTGTCGGTTGCCCAGTGGCCTCTTTGTGCCCTCACTGCTCTGTGGTGCCGCTTTCGGACACCTGGTGGCCAACCTCCTCAATATCAACCTGGGTATAGACATCTATTCCGGGACCTTTGCTCTAATTGGAGCAGCTGCCTTCCTGGGAGGCGTGGTCTGGATGACCATCAGCTTGACTGTCATTCTCATCGAATCAACCAATGAGATTACCTACAGCTTGCCCATTATGACAACCCTCATGGTAAAGTGGACAGGGGATTTCTGCAATAAGGGCATCTATGACGTCCACATTCATCTGAGAAGAGTGCCAATGCTGGAGTGGGAAATGGAGATGGACAAACTGACAGCCAGTGACATCATGGATCCCAACCCGACGTACGTGTACCCCTACACGCGCATCCAGTCCCTGGTGAGCATCCTGCGCACCACCGTCTACCACGCTTTCCCCGCGGTTACCGTGAACAGGGACAACGAGCACAAGTTCATGAAGGGCAACATCCTCATCAGCAACAACATTCGCTTCAAGacTATCCACACGGACTCTATGCCCATCCACTGGTCTCTACCCACTCAAGACGCACACACcttagggctgttgcgACACGTGCCCTACCCTAATCTGTATCCAGACTAGTCCACTAAGCGAGGAGTGGACCATGGAAGAGCGCTTCCGACCTCTGACCTTCCACAGCATCATCTTTGCGGTCCCAGTTGGTCAACCTGCTCATCCGTGGCGTCTGCTACACAGAGAACCAGTCGAGTGCCACGCAGCCCAGACTGTCATACGCTGAGATGACTGAGGACTACCCCTGTTTCCCAGGCATCCACAACTTGGACCTGGCTCTCCTCAACCCCCGCATGATAGTGATCCTTACAAGGAACCCCGACCGCCGTCTTCTCCTCCTGCGAATGCCGGGGATGAAGGTttgtcgggtgtctggagtaaatccttcccgtccgaattcctccagtacgggGACGTCACCCCGTACATGAACCCGTGCCCCTACACAGTGTCCCCAAACACGCATGTGTCTCAAGTTTTTAACCTGCTCAGGACCATGGGCCTCCAACACCTGCCTGTGGTCAATGCCGTAGTAGAGATTGTGGGAATAATCACACGACACAATTTAACCCAAGAGTTCCTTTTGGTGAAACTCAGACAGCACTACATCACCATTTGAGCTCCAGAGTCCAGTCTTTAAAGCCGACAAGAGCCGCCTGCGTCTTGCTGTCCTTGGGACACAATCCCCCCTGTAACTGGACCTGTACCATGCTTTTCCATGTCTTATCCATTACACACACCCAACCGCACGGCATCCATTCTCTGTATGAGATAATAGGCACACACCCCTTGTAATGAAGCTGGTGACTTTTGTCTGCTGCAGAGCCTTCCATCACCCAAAGATGTCCTCCGTGTCCCAACACATTTCCATGCtttaccaaccaaccaaccaacgaTTCATCATCATTATCACTGTAGCACTTTTGTTTAGATTTCtgactgtattttttttattttatgtttacTGTATATTTAGATGTTCTATTCTATATATTTGCACTAAAACCATTTCACTGTTCCGCCAGGGCTTCGATCAAAGTAGGCTCATCAAGAGATCGAGATTAGGGACCATTTCTAATCAAGGAATATGTTTGTGTTAACACAAAAATATGTAAAGCTGAACAACAGACCGTTGTTCTCACAAATATTCAGCCAACAGGGTTATGAGAGTGGAATGGAATCGACAAAAgtttattcattttatttttgttattttgactaAATATGCTGGGCCAAGGAAGGCTCAGCATATTTTCTAGACAGAAAATGGTGGATGTCTCTTTGTCAGTAttaatccttaagagtctattggCGTACCCGTGTGTCAATCtatgtaacataacaaaaatacccccatcaaaatctgtcaggttaagctagagatatcagtgtttttgcatgggctgcgtaacaatccaccacatccgcctaTGTCAGGCATTCCGCGTCTGCGGttgaaggtggccgagctacagctgtgtttgtcagaccatgaaacATCCTGAAAATCGGTATTGTCACAAAAATGTCTATAGCGTCCGAATGGTTTGGCCTGCAAACTCTCACAAACACTAttgtgttctccgttttgctctacgacccaaccacaagtgtcacgggaatcgtctgaaggtaactcatacaaatgaatggaagtagttttgtgccaacaaaaaatgGTGGTAGTTTAAAGGTAGAATCTGCAATATGACATCATCACATGACTCAAGGGATGGTGTAGATTGGGATACGTCAGTAATGGCTGTCTTGTTAAGTTGATGTGTGTAAGTAGGAAGTTGCCCCACTGTGTATGGCGCTGGTACTTATTGCGCGGCCTGCAGACTGCATGCCCTTAATTTGCATCTCGCTGTGATTTTCTTATTTTCCATGCATAAATACATAACAATGATACAATTTCAATTCAATGTGTTTAATGCAGGCTTGAATCACTTCATTGAATAAATCTATTGCTCCCTGGACGGCAGATAGATGGCAGTATAGCACAGCTGTTGGACAGAAAGGCCAAAATAGAATGTTTACCGAAATAGAACGCAGCTGCTCAGCTCCAGTGACCAATACATATCAGTTTGCTACTAGCTAATTTTGCAGACTGGTTGACATGGATCGATTTATTGGACGGACAAGTATTTTTTTGTACTGCATGATGGGACTAGCTCACTTTGTCTTATTTGCCAGAAGGCAGTCAATTGTTTTAAATGAGCAAATTTAGAGCGACATTTCCAGTCACGCCATGCCCACCTTTAAAGTACCACcattttttgttggcacaaaacatATCCGTCACAAAGCAACCTCAGAAACAACAAAATAGCTCAACTCAAAGGACAGCTCAAAGCACAACAATAAATGATGGACAGATCTAGCACTGTTGCAGAGAAAACGACAGAGGCAACATATGAGATTGCTTGGATACTCGCGAGAAACAAGAAGGCCTTCACAGACGCGGAGATTGTCAAATAATGTTTTTTGGCCTCACCCAAAATATTGTATGCTGATTTCACAAACAAGGAAGCTATTTTAATACAAATTAAGGGACTGAAACTCTCAGAATTGACCATAACAAGACGCATAGAAGCGAGGACATCGGTAAGCAACTGATTACCGACATATCCGTGGCGCCATGTTTTAGTATTGCTCTTTACGAAAGGACTGATATAAGTGGCATTGCACAATTATGTGTTTGGGTCCGCTTCCCTCAAAACGAGTTATTCAGAGAGGAACTTCAATGTTTACTGCCCCCTCAGGGCAAACACAAGGAGAGGATATTCTGAAAGCCCTTATTACATTTGTTGCTGATAATAATATTGACTGGTCAAATCTGGCATCTGTGTACACTGACGGCGTCCCAAACATgcgagggaaggagaagggaCTCATAGGCCTGATAAGAAAGTGAGAGGATATTCCCAAATTTGTTGCATTTCATTGAATCATTCATCAAGCTCTTGTGGCTAAACTCAAAGACTGTGACTTACAGAATGTGATGCAGCAAGTCGTGCTCGTGGTGAACATTATTATTGCGAGGATTCTGAATCACCGGCAATTCTGCGAGTTGCTGGAGGAATACCAGACAATACGGCAATTTGATATTTTGCAATGAGGTGAAATGGTAGTCTCGTGGCAGTTTTAgaatgatttctctctctcttccctcaaaTCTGTGAATTTGTTGTAAGCaaggggagagaggagccagagctggatgttccacagtggATATTAAAGCTGTCTTTTTTAACTGACATCACCTGCCACCTAAACACGGTGAATCTCCAACTCCAAGGGAAAGCTAAATGCATGTGGTCACAGCATTTCAAAATAAAATCACCACACTGTTCATACCTGACAGACAGTTTGTTCATTTCCCAAAACTCAGAGCAGTCACCACATCCAACCCAGACATACTGCAACATTTTAGCTatgatgcatttgtgtgtgtgttggaagagtTGAAGTTGGAGTTTGAGTCAAGATTCAAGGATATCATGGAGTACAAGGAGTTTTTCAACTTCATTGAGAACCTCTTTCATGTGTCATccagtgtcatctctgaccccagtcatcacagccctctgtactgaccgtgctggaatagagagtgagatagtggAGCTGCAGTGGAGCTGCAATGACACATTTCAAGGTGAACTAAGATCAGGTTTTACCCATTTCTGGAGCCTTGTGTCAGACACAGAGTATCCACTTCTGaagcagtgtgtgcaaaaggtgaCATCAGTTTTTGTCAGCGTTTATTCATGTGAAGCAACATTTTCAACAATGAACATTGTGAAATAAAAACGGAGAAACAGACTGACCAATGCACACCTCGATTGCCTCAAAAGGATAGCAACAATAGACTATACATTTAGAATGAATTCAGTCAAGGAGCAGAAGGGCCATTTTTGCTCATCCAACTACTGAGGTAACCCTTAATATGGGTCTTATACATGTGATGTAGCCTATTTGATGTGTGTATGTAAATATTTGTGATGTGCTATACATCAAATCAATTGCATGTGCTCTATTTCTCTGAATTTGCTCTCAATTGATAATTGATCATATTGGAAGAAAAAGTACAACAAATGAAAGATCTGTACGGCCCTCTGAATGATTGTCTCAACCCAAAGTGGCCCCCTTACAAAAAAATGGTGAGTAACACGggtatggtggtatggtggtatggtGATGTCATATGGCAGAGTCTACCTTTAACATGTGACTAAACATGATGATGAGGCGAGTGCAGCTTCTCTATGCCTTCTAAACAGTGTGGATAGATGTAAAGATAATCAATTATGACAAACCATGATGACACATATTTATACACTAAGTATTCTTTGTTGTATTTGTGTGATATTTTTtgctaaatgttttatttaagattttttttttttttttttaatttttacttGCTTCATGTATTGTGAATGGATCACATGAAATGGCGTTCATTACATTTGGTCTATAACAAGACGGACCGATGTTAATCtgggaaaaaaatacattattattcTTTGTGTCATCGCCATAGCGTGGGTTTCAAAATGTAAGGGTAATTTTCCCAAAACCAGGGAATTTTGGGtaagttactggaattttgcaaccctagccaTAACACACTTGTTATTTTAAATCAATGCTTTTGTCAGAGGAGGTTGGTGTGAGGAGctgtaggaggatgggctcattgtaatggctggaatataattaatggaacggagtcaaacgtggtttccatatgtttaatGTGTTGGataccattcagatttttttccaTTCCAGTCTTTACAATGAGCCcgttctcctatagctcctcccaccagcctcctctggttttGTGTATCATGCTACTTTATATCCACACTAAATGTTGTGTCTCTGCATATGACATGCCATCAGATGAGGTTGTATGACAAATGGTAAATGCGCTACGCTTAGTTAGCGTTGGGACCAGAGGGATCCGTTTCTTTGCCCAAAAAATATTATGGACACACCTGTGTTTAGTACGTCTGCTGTGGAGGTTTAGGCATTGCTCTGAGCTTGTTGAGAAGTTTGTGAAAGCTTGACAAATGTAGGAAAGCAAGCCCATGGCAAACACCATAGGTCCCTTGAAAAGAGCAAGGAGAGACCTCTGTCTTCTGCCTTGACATTACTCTTCAAAATAAAGGTCTCTTTGTTTTGTAAATCA
>TU923583
TCACTTCCTGACACTGCTCTTCCTGATTGGCTCCTTTGGCTGTCCTGTTGCCACAGCAACCTGGGTATAGACATCTATTCCGGGACCTTTGCTCTAATTGGAGCAGCTGCCTTCCTGGGAGGCGTGGTCTGGATGACCATCAGCTTGACTGTCATTCTCATCGAATCAACCAATGAGATTACCTACAGCTTGCCCATTATGACAACCCTCATGGTGGACAGGGGATTTCTGCAATAAGGGCATCTATGACGTCCACATTCATCTGAGAAGAGTGCCAATGCTGGAGTGGGAAATGGAGATGGACAAACTGACAGCCAGTGACATCATGGATCCCAACCCGACGTACGTGTACCCCTACACGCGCATCCAGTCCCTGGTGAGCATCCTGCGCACCACCGTCTACCACGCTTTCCCCGCGGTTACCGTGAACAGGGACAACGAGCACAAGTTCATGAAGGGCAACATCCTCATCAGCAACAACATTCGCTTCAAGattttctcaagctctgttaagtcaGATGGGGACAGGCGGTGAACAGccatcttcaagtctttccacagattcttgatgggattcaagtctggactttggctgggccactcaaggactttcacattccagcgttgctttggctgtatgtttggggtcattgtcctgttggactgtaaatctttgcccca
>TU923584
taaCTGTGGGATAGTTCTTTACATTTTATTTGCTTGTCTAGTGGTATCATATTAGAATTGTCCCAACTCCTACTGAACTTCCCTGTCCTGTGTCATTTAGCCAGTAGCTGCAGGCTTGGGAATCCCCGAGATCAAGAGCTACCTGAACGGAGTAAAGATACCCGGAATAGTCCAACTACGTACTTTCCTCTGCAAGGCCGTCAGAGTCCTCTTCACCGTAGTCTGAGGTCTGTTTGTGGGGAAGGAGGGTCCAATGATCCACAGCGGAGCCATCGCGGGAGCCGGCCTACCTCAGTTTCAGAGCATCACTTTCAAGAAGATCAACTTGGACTTCCCCTACTTCCGCAGTGACCGGGACAAGCGGGACTTTGTGTCGGTAGGGGCTGCGGCCGGGGTGGCTGCTGCGTTTGGGGCACCTATAGGGGGCACCCTCTTCAGCCTGGAGGAAGGCTCCTCTTTCTGGAACTAGGCACTCTCTTGAAAAGTGCTCTTCTGCTCCATGTCGACTACATTAACCCTTAACTTCTTTCGCTATGCGATAAACTACGACAAATGGGGTTCGTTCCAGCTACCCGGCCTGCTCAGCTTTGGGAGAGTTCAAGgacaatgacccaaagcacacctccaggcggtataagggctatttgaccaagagcgtgatggagtgctgcatccgatgacctggcctccaccatcacctgacctcaaaccaattgagacggtttgggatgagtttgaccgcagagtgaaggaaaaggagccaccaagtgctcagcatatgtgggaactccttcaagactgttggaaaaacattccaggtgaagctggttgagatgatgacagctttacacactcttggcattaaggtaaatggtggctacttttgaagaatcCCAA

Function

symbol description
clcn6 Predicted to enable chloride transmembrane transporter activity. Predicted to act upstream of or within chloride transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in intracellular membrane-bounded organelle. Is expressed in several structures, including eye; heart; integument; liver; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in coronary artery disease. Orthologous to human CLCN6 (chloride voltage-gated channel 6).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110531190 False 6830 mRNA 0.51 18 47642136 47676552
TU923583 False 681 TUCP 0.51 4 47663065 47664954
TU923584 True 897 TUCP 0.51 5 47674390 47676649

Neighbor

gene id symbol gene type direction distance location
LOC110532240 LOC106572132 coding downstream 145404 47409339 ~ 47496732 (-)
her9 LOC106572133 coding downstream 314887 47325387 ~ 47327249 (-)
perm1 LOC106572134 coding downstream 410408 47220114 ~ 47231732 (-)
noc2l noc2l coding downstream 496351 47114170 ~ 47145785 (-)
LOC110532232 LOC106572141 coding downstream 685655 46856523 ~ 46956481 (-)
LOC110532244 LOC106572127 coding upstream 30807 47707359 ~ 47731569 (-)
rbbp8l LOC106572126 coding upstream 67470 47744022 ~ 47765921 (-)
gata5 LOC106572125 coding upstream 128153 47804705 ~ 47813223 (-)
LOC110532251 LOC106572119 coding upstream 587129 48263681 ~ 48276634 (-)
LOC110532252 fkb1a coding upstream 601787 48278174 ~ 48286453 (-)
G811799 NA non-coding downstream 49597 47592265 ~ 47592539 (-)
G811797 NA non-coding downstream 51583 47590268 ~ 47590553 (-)
G811773 NA non-coding downstream 101629 47540303 ~ 47540507 (-)
G811667 NA non-coding downstream 107551 47534248 ~ 47534585 (-)
G811665 LOC106581475 non-coding downstream 110068 47531831 ~ 47532068 (-)
G811967 NA non-coding upstream 61892 47738444 ~ 47738996 (-)
G811973 NA non-coding upstream 84518 47761070 ~ 47828756 (-)
G812065 NA non-coding upstream 164233 47840785 ~ 47840999 (-)
G812093 NA non-coding upstream 216389 47892941 ~ 47893169 (-)
G812095 NA non-coding upstream 225298 47901850 ~ 47902089 (-)
G811300 NA other downstream 460339 47178804 ~ 47181797 (-)
G810563 NA other downstream 1386418 46253514 ~ 46256922 (-)
zmynd12 zmynd12 other downstream 1451144 46187156 ~ 46200250 (-)
pdyn pdyn other downstream 2323370 45316564 ~ 45318766 (-)
G809071 LOC106572179 other downstream 2344286 45295856 ~ 45298740 (-)
G812840 NA other upstream 832093 48508645 ~ 48509094 (-)
G813357 LOC106578276 other upstream 1238883 48915435 ~ 48915704 (-)
G814020 NA other upstream 1787405 49463957 ~ 49466762 (-)
G814157 edem2 other upstream 2058593 49735145 ~ 49736111 (-)

Expression


Co-expression Network