XLOC_026719


Basic Information

Item Value
gene id XLOC_026719
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 45832077 ~ 45843700 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052487
ttttttttaaaccaaccaTGCATTCAGCTATAATTCATGTTCTTCTAAATTTCTAGAGAATTCGCAGGAAAGCGATTACTACTGCACAACTCAAGTCAGTCAAAACAAAGTATGTCAGAGATGTCCGTGAGCTTGAGAAATCCACAAGGTTTGGCTGAGGCTAGGCAGAGAAACTCTTCAGGGAAAACTATAAAAGAAAACCAGCTTCAGGATTCTGAATCTTGCTGTAGTGAACCAGGTATTCAGCGGGTCAATGTCTGCTGTTCGCCTCCAAAATATAACCATAAACAGAATTCTCAATCTTCTCACTTTCCAGTTGCTGGAAACAAACAAAGGTACGTAATAATCTTACTTTTATTTCTTAACCTAAGACATGAACACaacataatatttacatttatcccCATGTGCAAAGAGATCACCACAATCATAAAAtcagatatgagaaagatctcAAGTTTTTGCAAACATCCAGACCTCAACGTTCGGCAAATAACAGGGATGACGTGGCTGAGAGGACTGATATTCTTTATGACCCTGTGAGTAACTAGCAGTTGATGTATAACATACACAAAGGAGACAGCTTTCAGTTTTGGAGTGAACACTGCTGTACTCTCTCCCCTTAGGAAGCATCCTACCTTCCTTCTGTGAACGCCTTACCTGCAGAGCTCCACACGAAGGACTGTTTGCTGTTGACTGTGCCCTTGTCCAGTCCTGGCGTGGTGGCTGGAAGAACGCAGCGGAAAACTCAGACCGTCAACTCAATCCTAATCAAATCGCATGTTTACAATGCACTCATAGCATGGCTCATGTCTttgACCAATCCTAAGGCTTGTATGGGAAAAGGCAATACGTTTGATGCCCCTTTCTGGGTGGCTGGACTGCAGCAATTGTATATAGAAGACAGCTTGGTTTTGTACATTTGTGCTGCATCTCTTGAGGGTGGTCCGACTGGCAGTAGGAAGATGAGGGGGGCTGAAATGGACGAGAACAAATTTTACAGAAGAGTTTGCAAGTTCTTTGCCCAGACATCATTGAAGACTGTTGCGTTCTGGGTACCTCAGCTTAATAATTTACTGGAGAAACAGCCTTATCCTGCACTTGTTCACTTGCCTTCATCCTACCTGGACTGCTTCATCTCTGTCAACCCAAATCCAGAggtattgttttatttagtatGTTTACTGTTATTGAGTCATTTTGGTAGCACAACATTTCACTTTACTTACCTAAAAAACACTGAGCAATAAAAGGTAATACATGGGTTAAGATTAGGTTTAAA
>TCONS_00052024
TAGCAAATGTCGCGTCAAACTGTGACAGAGAAGCCAACCGCAGTGTCAACAAAGCGTGTCTACGGCGTATGTGGTCGCCATGTCAACTACAGTTTCTGTTTGCCGGAGTCGTGAGAACCGCGTTCCAACTTTCAGAGTGAACACCGGCCACCTGTTTACTACAGCATTTTGAAGAGAAAAGACACCCACCTTCAGACATGCAGAGGACTTTAGTCGACATTATATCCAAGATACCAACCCTTGACTCTGACCTGTCATCATCTGACACCGAAGAAGACATGTCTATTCTTCATCAGCATCCACCAGTGAGTCACTCTCTGGAAGGGACCAGTTTAGAAAAGTCAGAAGtcaaggtgtgtgtttgtgttggtgcgagaaaatataataatttatcagATCACATTGTCTTTGACAAAATATTTACTCAAATCTGTTGCAGTTTTTGCCTTCTTGGACTGCTGATGACCAAAAAGGTGATTATAATCATCTGCTTCCAATGGGTCACAATACAGAAAGACCTATTAATGAAAGAGTGAAACATAAAACAGAAAGCAATCCTTCAGCAAACAAGACACAATTGACTGAAAACCAGCTCTGTTCTTTTTTGTCACTGGCAGTAAGTTAGGATGTATTTAATCACATTTTCAGCCAAGGGATACTAAATAAAGGCCtatgtaacaaattattatttcaaCAGCCTCTTGATACCTGGGATCTCGACCACGTCCTTCAGACTCTAAAGCAACATAAACCTCTTGTCAAGCCAATTCAGGCTGATATACTAAAAGGTTGGATTGCAGCCACTGTTTTATCCATTAACATTTACGCTACATTTCAGAATAACACAAAatgatcttttcttttttatagacAATGAAAGGGAAATGCATGAAAATGATTTAATGGAGCAGCTGGTTGCTTTTTGTGAGAGGAAAGTAAATGAAACGGAAATAAAACCTGCCAAATCTGATAATACACAAGAATTATCTCTCAGAGCAACTGGGAGAGACGTGGTGGACTTTAAAAGGAGCTCAGTACAATTACAACTCAATGACGATTCTCCCACTATATATATTGATTTGCGCACAAATGAATTTCAAACAACACTGTCAGACGTTAGCCAGAGTGACAGTGCTATATGTCCTACAAACCTGGACAAGGAAATTATCTCCTCTAAAGAGACCACAATTCCAATAGCAAATGGACAGAAAAGAGAATTCGCAGGAAAGCGATTACTACTGCACAACTCAAGTCAGTCAAAACAAAGTATGTCAGAGATGTCCGTGAGCTTGAGAAATCCACAAGGTTTGGCTGAGGCTAGGCAGAGAAACTCTTCAGGGAAAACTATAAAAGAAAACCAGCTTCAGGATTCTGAATCTTGCTGTAGTGAACCAGGTATTCAGCGGGTCAATGTCTGCTGTTCGCCTCCAAAATATAACCATAAACAGAATTCTCAATCTTCTCACTTTCCAGTTGCTGGAAACAAACAAAGGTACGTAATAATCTTACTTTTATTTCTTAACCTAAGACATGAACACaacataatatttacatttatcccCATGTGCAAAGAGATCACCACAATCATAAAAtcagatatgagaaagatctcAAGTTTTTGCAAACATCCAGACCTCAACGTTCGGCAAATAACAGGGATGACGTGGCTGAGAGGACTGATATTCTTTATGACCCTGTGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000117665

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052487 False 1282 lncRNA 0.41 3 45832077 45834382
TCONS_00052024 True 1700 lncRNA 0.40 4 45833840 45843700

Neighbor

gene id symbol gene type direction distance location
XLOC_026718 si:ch211-66h3.4 coding downstream 9163 45818626 ~ 45822914 (-)
XLOC_026717 h3f3b.1 coding downstream 53954 45776370 ~ 45778123 (-)
XLOC_026716 NA coding downstream 288626 45539786 ~ 45543451 (-)
XLOC_026715 il21r.1 coding downstream 470504 45343782 ~ 45361573 (-)
XLOC_026714 il21r.2 coding downstream 505180 45315477 ~ 45326897 (-)
XLOC_026720 igfals coding upstream 1307 45845007 ~ 45848257 (-)
XLOC_026721 shisa9b coding upstream 199706 46043406 ~ 46115232 (-)
XLOC_026722 NA coding upstream 309427 46153127 ~ 46217473 (-)
XLOC_026723 CR450782.1 coding upstream 380889 46224589 ~ 46227010 (-)
XLOC_026724 snrnp25 coding upstream 533605 46377305 ~ 46379900 (-)
XLOC_026709 NA non-coding downstream 1496224 44332747 ~ 44335853 (-)
XLOC_026708 NA non-coding downstream 1707707 44111545 ~ 44124370 (-)
XLOC_026703 BX682557.1 non-coding downstream 1942634 43878456 ~ 43889443 (-)
XLOC_026702 BX682557.2 non-coding downstream 1956948 43866785 ~ 43875129 (-)
XLOC_026726 NA non-coding upstream 618885 46462585 ~ 46463256 (-)
XLOC_026727 CR385086.1 non-coding upstream 913911 46757611 ~ 46762706 (-)
XLOC_026731 NA non-coding upstream 1286332 47130032 ~ 47131111 (-)

Expression


Co-expression Network