ntsr1 (LOC106572121)


Basic Information

Item Value
gene id ntsr1
gene name LOC106572121
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 48104332 ~ 48158964 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615974.2
CAACTTGCCTCCTGGGCTCTAATCCACACTCTCGCTTTGCTGCTTTTACGCGCAAACTCACTTCCCTCACTAACGCTACATGTGTTTTCTCAACAGGATTTTAATATTTTGCAGTCTTTAACAAGTGATTCTACGAGTCAATTATTTACATTACACAATATGGAGGGTAATTTTACACTGACAGGGCGCGACTTTCTAGATTTACGCGCGTTGGCTCAGAAACTTCTGACTCGGGGAAACAACTACTCTCTGCGTCTGGTGAACTACTCTCTGTTTGACAACGGATCGGGGTTCTATGAGGAGGACTCATTGGACGTGAACACTAACATCTACTCGAAAGTCCTGGTCACTGTGATCTATATCGCGCTCTTTGCGGTCGGTTGCTTAGGAAACTCCGTTACGTTGTACACCCTGCTGACCAAGAAGTCACTACAAAATCTCCAAAGCACTGTCCACTACCACCTAGCGAGTCTCGCCGTCTCCGACCTGCTCATACTTGTCCTTAGTATGCCCGTTGAACTCTATAACTTCATCTGGGTCCATCACCCTTGGGCGTTCGGGGGAGTCGTTTGTAAAGGTTACTATTTCATTCGGGATGCTTGCTCTTATGCCACAGCATTCAATATCGCCAGCCTCAGCGTGGAGCGTTATATGGCAATTTGCCACCCTTTCAAGGCGAAGAGCATCATGTCGCGCAGCCGCACCAAGAAGCTGATCAGCGGGATGTGGGTGGCTTCGTTCCTTCTGGCCTCTCCGATGCTCTTCACCATGGGCCAGAAGTACCATGGGCCCCAAAGGGAGAAGATATGCACCACAATCGTGTCACCTGTCTTATTGAAGATAGTGATTCAGGTGAATGTGTTCCTGTCCTTTGTGGTTCCCATGGTAGCCATATCTGCTCTGAATGGGGTCATCGCCAGTCAGCTGCTGCGTATGTTCAGAGAGACGAAGCAGGACACCCGCATCTGCATCATTGAAGGCAACCCTACCATGCTGAGTATCGCTGTGGAGCCAAACCGCACACAGTCGCTGCGTCATGGAGTCATGGTTCTACgGGCTGTGGTTGTTGCCTTTGTGGTGTGCTATCTACCGTATTATGTACGGCGCCTCATGTACTGTTACGCAGAGTTCACAGAGGAAGGGTATGATTACTACCACTACTTCTTCATGGTGACCAACGTCCTCTTCTATGTGAGCTCAGCCATCAACCCAGTCCTCTACAACCTGGTCTCAGCCAACTACCGGGAGATCTTCTTAAACACGCTCCGCTGCCTCTGCCTACCATGTCGTCGCAAGAAACAGAGACGTCCTCTGACCAGACACTCCATCAGCATCTGCAGTAACCACACCTTCTCCTCCAACATCATCAAGGAGACCGTCTACTGACGACGACAGAACCACACCCCTGATAACATTCCATTTCAGAACTACAATGTATGTATTCTAGTACTCGTCAGGACTAAATATGGGCTTGATGGGGACTCTGGCACTTTGAATCACTGACACGTTGTGCTACATAggctacacacacagaacatatcCAAAATGTGATATTGGTATGAttaatagaaagaaagaaagattaaGTGTTGGATGTAAAAGTCTTTAACGCTGTAAATAATGTAACATCTATGTACATTCAGATTTTTATAGAACTATCAATGCTACTCGGTTTTAACCACACAGTAGTTTATAAAATGATATGATGACGATCAGAACACGTATCTTTGAAGTAGGAGGCAAAAAACGTTATGCTGTGACAGTTACCAGGAAGTGACTTCCCCTCAGTTTTTGAACATTGTAAGCTTTTTAATTGGTCTTCAATGGGAAAAAACTAAGGGCAATGGTGTTTCAAGGGCAAAAACATaataaaaggcatctggcagaaGTAAATTCATCCACATACacaaatatgtgtatatatatttatctttAATGCGTTTTCACAAATTGTATGTAATAATCGTAAAGCCAGTGCATAAGATTAGGGGACATGACGTGGCAGTAAAGTGGAAGGGGCTCTTTTTTTGTGCCTGGAAAGAGTATTGATAAAAACAAAATGTCTGgtcattaaaaaaatgaaatgctCTGCTTGAACTGTGAATGTTAATGAAATGCTGAGAGAAGATGTAATATTGTGAAGAGGAGCAACAGATGGCAGTTACAGTTCATGGATGATCTGCTGTGGGGTTGAGCCCTATAGGCTGTTCTAGTATGCCAACTCCTGACCAATTACAGcaaacacagttgaagtcagaagtttacatacaccttagccaaataaatttcaactcagtttttcacaattcctgacatttcatccta

Function

NR:

description
neurotensin receptor type 1-like isoform X1

GO: NA

KEGG:

id description
K04211 NTSR1; neurotensin receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615974.2 True 2325 mRNA 0.44 4 48104332 48158964

Neighbor

gene id symbol gene type direction distance location
LOC110532248 LOC106572122 coding upstream 81142 47986339 ~ 48023190 (+)
LOC110532243 mthfr coding upstream 410184 47679540 ~ 47694148 (+)
LOC110533018 LOC106572129 coding upstream 467919 47635370 ~ 47636413 (+)
LOC110533017 LOC106572130 coding upstream 476390 47626332 ~ 47627942 (+)
LOC110532242 kiaa2013 coding upstream 515114 47579342 ~ 47589218 (+)
snphb LOC106572120 coding downstream 65683 48224647 ~ 48259337 (+)
LOC110532257 LOC106572113 coding downstream 227803 48386767 ~ 48394099 (+)
LOC110532258 LOC106572114 coding downstream 241673 48400637 ~ 48404003 (+)
taf13 taf13 coding downstream 422279 48581243 ~ 48582509 (+)
LOC110531191 LOC106566483 coding downstream 457359 48616323 ~ 48617448 (+)
G812101 NA non-coding upstream 72214 48029315 ~ 48032118 (+)
G812103 NA non-coding upstream 76345 48027529 ~ 48027987 (+)
G812102 NA non-coding upstream 78153 48024222 ~ 48026179 (+)
G812127 NA non-coding upstream 143585 47960522 ~ 47960747 (+)
G812126 NA non-coding upstream 144113 47959996 ~ 47960219 (+)
G812382 NA non-coding downstream 119213 48278177 ~ 48286426 (+)
G812555 NA non-coding downstream 170632 48329596 ~ 48329827 (+)
G812613 NA non-coding downstream 267320 48426284 ~ 48435659 (+)
G812683 NA non-coding downstream 375607 48534571 ~ 48534871 (+)
G812684 LOC106572106 non-coding downstream 379063 48538027 ~ 48541698 (+)
G812143 NA other upstream 122031 47982001 ~ 47982301 (+)
G809685 NA other upstream 1968600 46134731 ~ 46135732 (+)
G807841 NA other upstream 3651255 44442662 ~ 44453077 (+)
G807677 NA other upstream 3908291 44195715 ~ 44196041 (+)
G805600 NA other upstream 5755546 42346176 ~ 42348786 (+)
G812688 LOC106572106 other downstream 386490 48545454 ~ 48570593 (+)
G813071 NA other downstream 800785 48959749 ~ 48959991 (+)
G813074 etbr2 other downstream 844355 48962187 ~ 49006710 (+)
G813139 NA other downstream 956173 49115137 ~ 49115618 (+)
G815428 NA other downstream 2637250 50796214 ~ 50800381 (+)

Expression


Co-expression Network